RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 CCR2P41597 374 aa14.85□□□□□ -0.03
SS18-204ENST00000539244 TOB1P50616 345 aaPredicted RBP14.85□□□□□ -0.03
SS18-204ENST00000539244 EPHA5P54756 1037 aa14.85□□□□□ -0.03
SS18-204ENST00000539244 PTGDRQ13258 359 aa14.85□□□□□ -0.03
SS18-204ENST00000539244 NBR1Q14596 966 aa14.85□□□□□ -0.03
SS18-204ENST00000539244 FAM78AQ5JUQ0 283 aa14.85□□□□□ -0.03
SS18-204ENST00000539244 ZNF280DQ6N043 979 aa14.85□□□□□ -0.03
SS18-204ENST00000539244 RINT1Q6NUQ1 792 aa14.85□□□□□ -0.03
SS18-204ENST00000539244 C1orf186Q6ZWK4 172 aa14.85□□□□□ -0.03
SS18-204ENST00000539244 MAP4K3Q8IVH8 894 aa14.85□□□□□ -0.03
SS18-204ENST00000539244 GPR161Q8N6U8 529 aaKnown RBP14.85□□□□□ -0.03
SS18-204ENST00000539244 LEMD2Q8NC56 503 aa14.85□□□□□ -0.03
SS18-204ENST00000539244 TCEAL4Q96EI5 215 aa14.85□□□□□ -0.03
SS18-204ENST00000539244 IER2Q9BTL4 223 aa14.85□□□□□ -0.03
SS18-204ENST00000539244 RUSC1Q9BVN2 902 aa14.85□□□□□ -0.03
SS18-204ENST00000539244 TIPINQ9BVW5 301 aa14.85□□□□□ -0.03
SS18-204ENST00000539244 ZFP14Q9HCL3 533 aa14.85□□□□□ -0.03
SS18-204ENST00000539244 AFF4Q9UHB7 1163 aaKnown RBP14.85□□□□□ -0.03
SS18-204ENST00000539244 NUB1Q9Y5A7 615 aa14.85□□□□□ -0.03
SS18-204ENST00000539244 MAN2B1O00754 1011 aa14.84□□□□□ -0.03
SS18-204ENST00000539244 MOSPD3O75425 235 aa14.84□□□□□ -0.03
SS18-204ENST00000539244 GUCY2CP25092 1073 aa14.84□□□□□ -0.03
SS18-204ENST00000539244 PRPHP41219 470 aa14.84□□□□□ -0.03
SS18-204ENST00000539244 GNL2Q13823 731 aaKnown RBP14.84□□□□□ -0.03
SS18-204ENST00000539244 CTXN3Q4LDR2 81 aa14.84□□□□□ -0.03
SS18-204ENST00000539244 CYP4A22Q5TCH4 519 aa14.84□□□□□ -0.03
SS18-204ENST00000539244 KRT79Q5XKE5 535 aa14.84□□□□□ -0.03
SS18-204ENST00000539244 PDZD4Q76G19 769 aaPredicted RBP14.84□□□□□ -0.03
SS18-204ENST00000539244 APPL2Q8NEU8 664 aa14.84□□□□□ -0.03
SS18-204ENST00000539244 BEST2Q8NFU1 509 aa14.84□□□□□ -0.03
SS18-204ENST00000539244 SPIRE2Q8WWL2 714 aa14.84□□□□□ -0.03
SS18-204ENST00000539244 DDX12PQ92771 950 aa14.84□□□□□ -0.03
SS18-204ENST00000539244 IRF7Q92985 503 aa14.84□□□□□ -0.03
SS18-204ENST00000539244 C18orf25Q96B23 403 aaPredicted RBP14.84□□□□□ -0.03
SS18-204ENST00000539244 MMTAG2Q9BU76 263 aaKnown RBP14.84□□□□□ -0.03
SS18-204ENST00000539244 TRMT61BQ9BVS5 477 aaKnown RBP14.84□□□□□ -0.03
SS18-204ENST00000539244 CHRDQ9H2X0 955 aa14.84□□□□□ -0.03
SS18-204ENST00000539244 BRD9Q9H8M2 597 aa14.84□□□□□ -0.03
SS18-204ENST00000539244 TRPV4Q9HBA0 871 aa14.84□□□□□ -0.03
SS18-204ENST00000539244 NCDNQ9UBB6 729 aa14.84□□□□□ -0.03
SS18-204ENST00000539244 KCNG1Q9UIX4 513 aa14.84□□□□□ -0.03
SS18-204ENST00000539244 MYH11P35749 1972 aa14.84□□□□□ -0.03
SS18-204ENST00000539244 NRG2O14511 850 aaPredicted RBP14.83□□□□□ -0.04
SS18-204ENST00000539244 TOM1L1O75674 476 aa14.83□□□□□ -0.04
SS18-204ENST00000539244 TDGF1P13385 188 aa14.83□□□□□ -0.04
SS18-204ENST00000539244 ARPP19P56211 112 aa14.83□□□□□ -0.04
SS18-204ENST00000539244 MTAPQ13126 283 aa14.83□□□□□ -0.04
SS18-204ENST00000539244 GRM2Q14416 872 aa14.83□□□□□ -0.04
SS18-204ENST00000539244 RSPO4Q2I0M5 234 aaPredicted RBP14.83□□□□□ -0.04
SS18-204ENST00000539244 SLC10A6Q3KNW5 377 aa14.83□□□□□ -0.04
SS18-204ENST00000539244 IQCEQ6IPM2 695 aa14.83□□□□□ -0.04
SS18-204ENST00000539244 ELMOD1Q8N336 334 aa14.83□□□□□ -0.04
SS18-204ENST00000539244 KCTD17Q8N5Z5 321 aa14.83□□□□□ -0.04
SS18-204ENST00000539244 DEPDC1BQ8WUY9 529 aa14.83□□□□□ -0.04
SS18-204ENST00000539244 SMARCD2Q92925 531 aa14.83□□□□□ -0.04
SS18-204ENST00000539244 KCNN1Q92952 543 aa14.83□□□□□ -0.04
SS18-204ENST00000539244 TBC1D32Q96NH3 1257 aa14.83□□□□□ -0.04
SS18-204ENST00000539244 TCHPQ9BT92 498 aa14.83□□□□□ -0.04
SS18-204ENST00000539244 ZNF334Q9HCZ1 680 aaPredicted RBP14.83□□□□□ -0.04
SS18-204ENST00000539244 CEP72Q9P209 647 aa14.83□□□□□ -0.04
SS18-204ENST00000539244 PCDHB8Q9UN66 801 aa14.83□□□□□ -0.04
SS18-204ENST00000539244 SMG5Q9UPR3 1016 aaKnown RBP14.83□□□□□ -0.04
SS18-204ENST00000539244 PCDHB6Q9Y5E3 794 aa14.83□□□□□ -0.04
SS18-204ENST00000539244 GTF3C5Q9Y5Q8 519 aaPredicted RBP14.83□□□□□ -0.04
SS18-204ENST00000539244 TICRRQ7Z2Z1 1910 aa14.82□□□□□ -0.04
SS18-204ENST00000539244 NCOR2Q9Y618 2525 aa14.82□□□□□ -0.04
SS18-204ENST00000539244 PP2D1A8MPX8 630 aa14.82□□□□□ -0.04
SS18-204ENST00000539244 M0QZQ0 153 aa14.82□□□□□ -0.04
SS18-204ENST00000539244 SLC16A4O15374 487 aa14.82□□□□□ -0.04
SS18-204ENST00000539244 OAZ2O95190 189 aa14.82□□□□□ -0.04
SS18-204ENST00000539244 PSMC3P17980 439 aa14.82□□□□□ -0.04
SS18-204ENST00000539244 SDHBP21912 280 aa14.82□□□□□ -0.04
SS18-204ENST00000539244 MCM4P33991 863 aa14.82□□□□□ -0.04
SS18-204ENST00000539244 MLLT6P55198 1093 aaPredicted RBP14.82□□□□□ -0.04
SS18-204ENST00000539244 NOLC1Q14978 699 aaKnown RBP eCLIP14.82□□□□□ -0.04
SS18-204ENST00000539244 IL17AQ16552 155 aa14.82□□□□□ -0.04
SS18-204ENST00000539244 HYIQ5T013 277 aa14.82□□□□□ -0.04
SS18-204ENST00000539244 TSSK4Q6SA08 328 aa14.82□□□□□ -0.04
SS18-204ENST00000539244 VITQ6UXI7 678 aa14.82□□□□□ -0.04
SS18-204ENST00000539244 ZPBP2Q6X784 338 aa14.82□□□□□ -0.04
SS18-204ENST00000539244 KCNK18Q7Z418 384 aa14.82□□□□□ -0.04
SS18-204ENST00000539244 FAM184AQ8NB25 1140 aa14.82□□□□□ -0.04
SS18-204ENST00000539244 TMEM161BQ8NDZ6 487 aa14.82□□□□□ -0.04
SS18-204ENST00000539244 SECISBP2LQ93073 1101 aaKnown RBP14.82□□□□□ -0.04
SS18-204ENST00000539244 ZBTB45Q96K62 511 aaPredicted RBP14.82□□□□□ -0.04
SS18-204ENST00000539244 ZSCAN31Q96LW9 406 aaPredicted RBP14.82□□□□□ -0.04
SS18-204ENST00000539244 ZNF512Q96ME7 567 aaPredicted RBP14.82□□□□□ -0.04
SS18-204ENST00000539244 ZSWIM3Q96MP5 696 aa14.82□□□□□ -0.04
SS18-204ENST00000539244 OXCT2Q9BYC2 517 aaPredicted RBP14.82□□□□□ -0.04
SS18-204ENST00000539244 SH2B1Q9NRF2 756 aaPredicted RBP14.82□□□□□ -0.04
SS18-204ENST00000539244 ARNTLO00327 626 aa14.81□□□□□ -0.04
SS18-204ENST00000539244 SEC24BO95487 1268 aa14.81□□□□□ -0.04
SS18-204ENST00000539244 MAPTP10636 758 aaKnown RBP14.81□□□□□ -0.04
SS18-204ENST00000539244 PLS3P13797 630 aa14.81□□□□□ -0.04
SS18-204ENST00000539244 TGM1P22735 817 aa14.81□□□□□ -0.04
SS18-204ENST00000539244 CDC25AP30304 524 aa14.81□□□□□ -0.04
SS18-204ENST00000539244 LRPAP1P30533 357 aa14.81□□□□□ -0.04
SS18-204ENST00000539244 AARSP49588 968 aaKnown RBP eCLIP14.81□□□□□ -0.04
SS18-204ENST00000539244 NRLP54845 237 aa14.81□□□□□ -0.04
SS18-204ENST00000539244 MCL1Q07820 350 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms