RNA–Protein interactions for RNA: ENST00000534172.1

CSMD3-210, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 5

Gene CSMD3, Length 2,486 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-210ENST00000534172 ZKSCAN1P17029 563 aaPredicted RBP4.25□□□□□ -1.73
CSMD3-210ENST00000534172 CASRP41180 1078 aa4.25□□□□□ -1.73
CSMD3-210ENST00000534172 TM4SF4P48230 202 aa4.25□□□□□ -1.73
CSMD3-210ENST00000534172 CTXN1P60606 82 aa4.25□□□□□ -1.73
CSMD3-210ENST00000534172 KRT72Q14CN4 511 aa4.25□□□□□ -1.73
CSMD3-210ENST00000534172 KIAA0753Q2KHM9 967 aa4.25□□□□□ -1.73
CSMD3-210ENST00000534172 RHOT1Q8IXI2 618 aa4.25□□□□□ -1.73
CSMD3-210ENST00000534172 TRMT2AQ8IZ69 625 aaKnown RBP4.25□□□□□ -1.73
CSMD3-210ENST00000534172 AOPEPQ8N6M6 819 aa4.25□□□□□ -1.73
CSMD3-210ENST00000534172 CHST13Q8NET6 341 aa4.25□□□□□ -1.73
CSMD3-210ENST00000534172 ZFP28Q8NHY6 868 aa4.25□□□□□ -1.73
CSMD3-210ENST00000534172 NSUN6Q8TEA1 469 aaKnown RBP4.25□□□□□ -1.73
CSMD3-210ENST00000534172 ZNF512Q96ME7 567 aaPredicted RBP4.25□□□□□ -1.73
CSMD3-210ENST00000534172 OR14A2Q96R54 314 aa4.25□□□□□ -1.73
CSMD3-210ENST00000534172 RSAD1Q9HA92 442 aa4.25□□□□□ -1.73
CSMD3-210ENST00000534172 TCAF1Q9Y4C2 921 aa4.25□□□□□ -1.73
CSMD3-210ENST00000534172 PTPRKQ15262 1439 aa4.25□□□□□ -1.73
CSMD3-210ENST00000534172 ADAMTS12P58397 1594 aa4.25□□□□□ -1.73
CSMD3-210ENST00000534172 PATE3B3GLJ2 98 aa4.24□□□□□ -1.73
CSMD3-210ENST00000534172 F5H423 210 aaPredicted RBP4.24□□□□□ -1.73
CSMD3-210ENST00000534172 FAM227AF5H4B4 570 aa4.24□□□□□ -1.73
CSMD3-210ENST00000534172 H3BML4 177 aa4.24□□□□□ -1.73
CSMD3-210ENST00000534172 GPR32O75388 356 aa4.24□□□□□ -1.73
CSMD3-210ENST00000534172 MTHFD1P11586 935 aaKnown RBP4.24□□□□□ -1.73
CSMD3-210ENST00000534172 SYN1P17600 705 aa4.24□□□□□ -1.73
CSMD3-210ENST00000534172 COMTP21964 271 aa4.24□□□□□ -1.73
CSMD3-210ENST00000534172 CTSWP56202 376 aa4.24□□□□□ -1.73
CSMD3-210ENST00000534172 FAM193AP78312 1265 aa4.24□□□□□ -1.73
CSMD3-210ENST00000534172 SEMA5AQ13591 1074 aa4.24□□□□□ -1.73
CSMD3-210ENST00000534172 PGS1Q32NB8 556 aa4.24□□□□□ -1.73
CSMD3-210ENST00000534172 TCTN3Q6NUS6 607 aa4.24□□□□□ -1.73
CSMD3-210ENST00000534172 DRICH1Q6PGQ1 229 aaPredicted RBP4.24□□□□□ -1.73
CSMD3-210ENST00000534172 DENND1CQ8IV53 801 aa4.24□□□□□ -1.73
CSMD3-210ENST00000534172 SMAP1Q8IYB5 467 aaPredicted RBP4.24□□□□□ -1.73
CSMD3-210ENST00000534172 CPXCR1Q8N123 301 aa4.24□□□□□ -1.73
CSMD3-210ENST00000534172 PAF1Q8N7H5 531 aa4.24□□□□□ -1.73
CSMD3-210ENST00000534172 EDAQ92838 391 aa4.24□□□□□ -1.73
CSMD3-210ENST00000534172 RBM15Q96T37 977 aaKnown RBP eCLIP4.24□□□□□ -1.73
CSMD3-210ENST00000534172 APOL5Q9BWW9 433 aa4.24□□□□□ -1.73
CSMD3-210ENST00000534172 TMEM60Q9H2L4 133 aa4.24□□□□□ -1.73
CSMD3-210ENST00000534172 DMRT3Q9NQL9 472 aa4.24□□□□□ -1.73
CSMD3-210ENST00000534172 MAP3K20Q9NYL2 800 aaKnown RBP4.24□□□□□ -1.73
CSMD3-210ENST00000534172 FANCIQ9NVI1 1328 aa4.24□□□□□ -1.73
CSMD3-210ENST00000534172 CUL7Q14999 1698 aa4.24□□□□□ -1.73
CSMD3-210ENST00000534172 ADAMTS20P59510 1910 aa4.24□□□□□ -1.73
CSMD3-210ENST00000534172 ABCA5Q8WWZ7 1642 aa4.24□□□□□ -1.73
CSMD3-210ENST00000534172 GOLGA6L6A8MZA4 724 aa4.24□□□□□ -1.73
CSMD3-210ENST00000534172 ZNF623O75123 536 aa4.24□□□□□ -1.73
CSMD3-210ENST00000534172 SMARCA1P28370 1054 aa4.24□□□□□ -1.73
CSMD3-210ENST00000534172 GUCY1A2P33402 732 aa4.24□□□□□ -1.73
CSMD3-210ENST00000534172 PPM1FP49593 454 aaPredicted RBP4.24□□□□□ -1.73
CSMD3-210ENST00000534172 CREMQ03060 361 aa4.24□□□□□ -1.73
CSMD3-210ENST00000534172 PLP2Q04941 152 aa4.24□□□□□ -1.73
CSMD3-210ENST00000534172 SEPT2Q15019 361 aa4.24□□□□□ -1.73
CSMD3-210ENST00000534172 Q6ZVL8 140 aa4.24□□□□□ -1.73
CSMD3-210ENST00000534172 ACRBPQ8NEB7 543 aa4.24□□□□□ -1.73
CSMD3-210ENST00000534172 DNERQ8NFT8 737 aa4.24□□□□□ -1.73
CSMD3-210ENST00000534172 POF1BQ8WVV4 589 aa4.24□□□□□ -1.73
CSMD3-210ENST00000534172 ST8SIA2Q92186 375 aa4.24□□□□□ -1.73
CSMD3-210ENST00000534172 CLPTM1LQ96KA5 538 aa4.24□□□□□ -1.73
CSMD3-210ENST00000534172 SGCZQ96LD1 299 aa4.24□□□□□ -1.73
CSMD3-210ENST00000534172 CCDC138Q96M89 665 aa4.24□□□□□ -1.73
CSMD3-210ENST00000534172 TBCBQ99426 244 aa4.24□□□□□ -1.73
CSMD3-210ENST00000534172 B3GNT5Q9BYG0 378 aa4.24□□□□□ -1.73
CSMD3-210ENST00000534172 REXO4Q9GZR2 422 aaKnown RBP4.24□□□□□ -1.73
CSMD3-210ENST00000534172 BHMT2Q9H2M3 363 aa4.24□□□□□ -1.73
CSMD3-210ENST00000534172 WDCPQ9H6R7 721 aa4.24□□□□□ -1.73
CSMD3-210ENST00000534172 AGO3Q9H9G7 860 aaKnown RBP4.24□□□□□ -1.73
CSMD3-210ENST00000534172 LIMCH1Q9UPQ0 1083 aa4.24□□□□□ -1.73
CSMD3-210ENST00000534172 MORC2Q9Y6X9 1032 aaPredicted RBP4.24□□□□□ -1.73
CSMD3-210ENST00000534172 ARHGEF40Q8TER5 1519 aa4.24□□□□□ -1.73
CSMD3-210ENST00000534172 BTBD11A6QL63 1104 aa4.23□□□□□ -1.73
CSMD3-210ENST00000534172 B3GALT2O43825 422 aa4.23□□□□□ -1.73
CSMD3-210ENST00000534172 TOM1O60784 492 aa4.23□□□□□ -1.73
CSMD3-210ENST00000534172 UBXN7O94888 489 aa4.23□□□□□ -1.73
CSMD3-210ENST00000534172 AMHP03971 560 aa4.23□□□□□ -1.73
CSMD3-210ENST00000534172 TYRP1P17643 537 aa4.23□□□□□ -1.73
CSMD3-210ENST00000534172 EDNRBP24530 442 aa4.23□□□□□ -1.73
CSMD3-210ENST00000534172 MSX2P35548 267 aaPredicted RBP4.23□□□□□ -1.73
CSMD3-210ENST00000534172 SELENOPP49908 381 aa4.23□□□□□ -1.73
CSMD3-210ENST00000534172 PRAMEF14Q5SWL7 426 aa4.23□□□□□ -1.73
CSMD3-210ENST00000534172 SEM1Q6ZVN7 128 aa4.23□□□□□ -1.73
CSMD3-210ENST00000534172 FUKQ8N0W3 1084 aa4.23□□□□□ -1.73
CSMD3-210ENST00000534172 LILRA3Q8N6C8 439 aaPredicted RBP4.23□□□□□ -1.73
CSMD3-210ENST00000534172 MDGA1Q8NFP4 955 aa4.23□□□□□ -1.73
CSMD3-210ENST00000534172 DPF2Q92785 391 aa4.23□□□□□ -1.73
CSMD3-210ENST00000534172 RGMAQ96B86 450 aa4.23□□□□□ -1.73
CSMD3-210ENST00000534172 PGBD4Q96DM1 585 aa4.23□□□□□ -1.73
CSMD3-210ENST00000534172 MTFMTQ96DP5 389 aaKnown RBP4.23□□□□□ -1.73
CSMD3-210ENST00000534172 SSBP3Q9BWW4 388 aaPredicted RBP4.23□□□□□ -1.73
CSMD3-210ENST00000534172 ANAPC4Q9UJX5 808 aa4.23□□□□□ -1.73
CSMD3-210ENST00000534172 LZTS1Q9Y250 596 aa4.23□□□□□ -1.73
CSMD3-210ENST00000534172 MYBBP1AQ9BQG0 1328 aaKnown RBP4.23□□□□□ -1.73
CSMD3-210ENST00000534172 DIRC3C9JPN6 131 aa4.23□□□□□ -1.73
CSMD3-210ENST00000534172 GPR42O15529 346 aa4.23□□□□□ -1.73
CSMD3-210ENST00000534172 PRICKLE3O43900 615 aaPredicted RBP4.23□□□□□ -1.73
CSMD3-210ENST00000534172 ATP5JP18859 108 aa4.23□□□□□ -1.73
CSMD3-210ENST00000534172 DDCP20711 480 aa4.23□□□□□ -1.73
CSMD3-210ENST00000534172 CLRN1P58418 232 aa4.23□□□□□ -1.73
CSMD3-210ENST00000534172 BMT2Q1RMZ1 405 aa4.23□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms