RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 SCP2P22307 547 aa11.59□□□□□ -0.55
CD44-227ENST00000528086 TXLNAP40222 546 aa11.59□□□□□ -0.55
CD44-227ENST00000528086 ROR1Q01973 937 aa11.59□□□□□ -0.55
CD44-227ENST00000528086 ELAVL2Q12926 359 aaKnown RBP11.59□□□□□ -0.55
CD44-227ENST00000528086 CUL4BQ13620 913 aa11.59□□□□□ -0.55
CD44-227ENST00000528086 PTPN21Q16825 1174 aa11.59□□□□□ -0.55
CD44-227ENST00000528086 ADALQ6DHV7 355 aa11.59□□□□□ -0.55
CD44-227ENST00000528086 ZDHHC14Q8IZN3 488 aa11.59□□□□□ -0.55
CD44-227ENST00000528086 ST13P5Q8NFI4 369 aaPredicted RBP11.59□□□□□ -0.55
CD44-227ENST00000528086 KCNG4Q8TDN1 519 aa11.59□□□□□ -0.55
CD44-227ENST00000528086 SAAL1Q96ER3 474 aa11.59□□□□□ -0.55
CD44-227ENST00000528086 RIPOR3Q96MK2 946 aa11.59□□□□□ -0.55
CD44-227ENST00000528086 RTP3Q9BQQ7 232 aa11.59□□□□□ -0.55
CD44-227ENST00000528086 GZF1Q9H116 711 aaPredicted RBP11.59□□□□□ -0.55
CD44-227ENST00000528086 BLZF1Q9H2G9 400 aa11.59□□□□□ -0.55
CD44-227ENST00000528086 CRISPLD1Q9H336 500 aa11.59□□□□□ -0.55
CD44-227ENST00000528086 PLEKHA4Q9H4M7 779 aa11.59□□□□□ -0.55
CD44-227ENST00000528086 RPF1Q9H9Y2 349 aaKnown RBP11.59□□□□□ -0.55
CD44-227ENST00000528086 TSHZ2Q9NRE2 1034 aa11.59□□□□□ -0.55
CD44-227ENST00000528086 HCFC1R1Q9NWW0 138 aa11.59□□□□□ -0.55
CD44-227ENST00000528086 LIMD1Q9UGP4 676 aa11.59□□□□□ -0.55
CD44-227ENST00000528086 SERTAD1Q9UHV2 236 aa11.59□□□□□ -0.55
CD44-227ENST00000528086 FBXL5Q9UKA1 691 aa11.59□□□□□ -0.55
CD44-227ENST00000528086 AGO2Q9UKV8 859 aaKnown RBP11.59□□□□□ -0.55
CD44-227ENST00000528086 TIMM13Q9Y5L4 95 aaPredicted RBP11.59□□□□□ -0.55
CD44-227ENST00000528086 PTPRJQ12913 1337 aa11.59□□□□□ -0.55
CD44-227ENST00000528086 COL4A3Q01955 1670 aa11.59□□□□□ -0.55
CD44-227ENST00000528086 FAM237AA0A1B0GTK4 181 aa11.58□□□□□ -0.56
CD44-227ENST00000528086 GOLGA8IPA6NC78 632 aa11.58□□□□□ -0.56
CD44-227ENST00000528086 GOLGA8JA6NMD2 632 aa11.58□□□□□ -0.56
CD44-227ENST00000528086 SYN3O14994 580 aa11.58□□□□□ -0.56
CD44-227ENST00000528086 GCNT3O95395 438 aa11.58□□□□□ -0.56
CD44-227ENST00000528086 PDGFBP01127 241 aaPredicted RBP11.58□□□□□ -0.56
CD44-227ENST00000528086 HSP90AA1P07900 732 aaKnown RBP11.58□□□□□ -0.56
CD44-227ENST00000528086 ALADP13716 330 aa11.58□□□□□ -0.56
CD44-227ENST00000528086 MATR3P43243 847 aaKnown RBP eCLIP11.58□□□□□ -0.56
CD44-227ENST00000528086 LILRA4P59901 499 aa11.58□□□□□ -0.56
CD44-227ENST00000528086 PPP2R3AQ06190 1150 aa11.58□□□□□ -0.56
CD44-227ENST00000528086 C9orf57Q5W0N0 161 aa11.58□□□□□ -0.56
CD44-227ENST00000528086 ATL3Q6DD88 541 aa11.58□□□□□ -0.56
CD44-227ENST00000528086 TRIM67Q6ZTA4 783 aa11.58□□□□□ -0.56
CD44-227ENST00000528086 TMEM87AQ8NBN3 555 aa11.58□□□□□ -0.56
CD44-227ENST00000528086 SCFD1Q8WVM8 642 aa11.58□□□□□ -0.56
CD44-227ENST00000528086 SMG7Q92540 1137 aaKnown RBP11.58□□□□□ -0.56
CD44-227ENST00000528086 ACCSQ96QU6 501 aa11.58□□□□□ -0.56
CD44-227ENST00000528086 TMEM209Q96SK2 561 aa11.58□□□□□ -0.56
CD44-227ENST00000528086 ZDHHC7Q9NXF8 308 aa11.58□□□□□ -0.56
CD44-227ENST00000528086 UBQLN1Q9UMX0 589 aaKnown RBP11.58□□□□□ -0.56
CD44-227ENST00000528086 USTQ9Y2C2 406 aa11.58□□□□□ -0.56
CD44-227ENST00000528086 CLUHO75153 1309 aa11.58□□□□□ -0.56
CD44-227ENST00000528086 A0A1B0GVL5 298 aa11.57□□□□□ -0.56
CD44-227ENST00000528086 PRR33A8MZF0 331 aa11.57□□□□□ -0.56
CD44-227ENST00000528086 CCL16O15467 120 aa11.57□□□□□ -0.56
CD44-227ENST00000528086 OAZ2O95190 189 aa11.57□□□□□ -0.56
CD44-227ENST00000528086 C8AP07357 584 aa11.57□□□□□ -0.56
CD44-227ENST00000528086 PDIA4P13667 645 aaKnown RBP11.57□□□□□ -0.56
CD44-227ENST00000528086 ME1P48163 572 aa11.57□□□□□ -0.56
CD44-227ENST00000528086 ANKS3Q6ZW76 656 aa11.57□□□□□ -0.56
CD44-227ENST00000528086 BRSK2Q8IWQ3 736 aa11.57□□□□□ -0.56
CD44-227ENST00000528086 IQUBQ8NA54 791 aa11.57□□□□□ -0.56
CD44-227ENST00000528086 BEST2Q8NFU1 509 aa11.57□□□□□ -0.56
CD44-227ENST00000528086 ZNF461Q8TAF7 563 aa11.57□□□□□ -0.56
CD44-227ENST00000528086 ITFG1Q8TB96 612 aa11.57□□□□□ -0.56
CD44-227ENST00000528086 SLC7A14Q8TBB6 771 aa11.57□□□□□ -0.56
CD44-227ENST00000528086 ZNF507Q8TCN5 953 aa11.57□□□□□ -0.56
CD44-227ENST00000528086 RSAD2Q8WXG1 361 aa11.57□□□□□ -0.56
CD44-227ENST00000528086 POMGNT1Q8WZA1 660 aa11.57□□□□□ -0.56
CD44-227ENST00000528086 FAM212AQ96EL1 285 aa11.57□□□□□ -0.56
CD44-227ENST00000528086 FAM213AQ9BRX8 229 aa11.57□□□□□ -0.56
CD44-227ENST00000528086 RPP25Q9BUL9 199 aaKnown RBP11.57□□□□□ -0.56
CD44-227ENST00000528086 CUEDC2Q9H467 287 aa11.57□□□□□ -0.56
CD44-227ENST00000528086 GOLPH3LQ9H4A5 285 aa11.57□□□□□ -0.56
CD44-227ENST00000528086 PCIF1Q9H4Z3 704 aa11.57□□□□□ -0.56
CD44-227ENST00000528086 GDPD2Q9HCC8 539 aa11.57□□□□□ -0.56
CD44-227ENST00000528086 DNMT3BQ9UBC3 853 aaKnown RBP11.57□□□□□ -0.56
CD44-227ENST00000528086 KCNH3Q9ULD8 1083 aa11.57□□□□□ -0.56
CD44-227ENST00000528086 PCDHB8Q9UN66 801 aa11.57□□□□□ -0.56
CD44-227ENST00000528086 ARHGEF37A1IGU5 675 aa11.56□□□□□ -0.56
CD44-227ENST00000528086 TMEM221A6NGB7 291 aa11.56□□□□□ -0.56
CD44-227ENST00000528086 M0R296 226 aa11.56□□□□□ -0.56
CD44-227ENST00000528086 OR4Q2P0C623 313 aa11.56□□□□□ -0.56
CD44-227ENST00000528086 PRR29P0C7W0 189 aa11.56□□□□□ -0.56
CD44-227ENST00000528086 PFKFB1P16118 471 aa11.56□□□□□ -0.56
CD44-227ENST00000528086 GARTP22102 1010 aa11.56□□□□□ -0.56
CD44-227ENST00000528086 CMA1P23946 247 aa11.56□□□□□ -0.56
CD44-227ENST00000528086 HOXA9P31269 272 aa11.56□□□□□ -0.56
CD44-227ENST00000528086 MCM4P33991 863 aa11.56□□□□□ -0.56
CD44-227ENST00000528086 AFMP43652 599 aa11.56□□□□□ -0.56
CD44-227ENST00000528086 ASIC1P78348 528 aa11.56□□□□□ -0.56
CD44-227ENST00000528086 POU5F1Q01860 360 aaKnown RBP11.56□□□□□ -0.56
CD44-227ENST00000528086 CREMQ03060 361 aa11.56□□□□□ -0.56
CD44-227ENST00000528086 TMEM132DQ14C87 1099 aa11.56□□□□□ -0.56
CD44-227ENST00000528086 KYAT1Q16773 422 aa11.56□□□□□ -0.56
CD44-227ENST00000528086 SLC5A9Q2M3M2 681 aa11.56□□□□□ -0.56
CD44-227ENST00000528086 SLFN12LQ6IEE8 588 aa11.56□□□□□ -0.56
CD44-227ENST00000528086 CYP26C1Q6V0L0 522 aa11.56□□□□□ -0.56
CD44-227ENST00000528086 RNF19BQ6ZMZ0 732 aa11.56□□□□□ -0.56
CD44-227ENST00000528086 CCDC149Q6ZUS6 474 aa11.56□□□□□ -0.56
CD44-227ENST00000528086 UNC13DQ70J99 1090 aa11.56□□□□□ -0.56
CD44-227ENST00000528086 GRASPQ7Z6J2 395 aaPredicted RBP11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms