RNA–Protein interactions for RNA: ENST00000523488.5

CSMD1-213, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 3,714 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-213ENST00000523488 EAPPQ56P03 285 aaPredicted RBP8.89□□□□□ -0.99
CSMD1-213ENST00000523488 SFR1Q86XK3 245 aa8.89□□□□□ -0.99
CSMD1-213ENST00000523488 SCYL3Q8IZE3 742 aa8.89□□□□□ -0.99
CSMD1-213ENST00000523488 MPHOSPH6Q99547 160 aaKnown RBP8.89□□□□□ -0.99
CSMD1-213ENST00000523488 YIPF2Q9BWQ6 316 aa8.89□□□□□ -0.99
CSMD1-213ENST00000523488 GIN1Q9NXP7 522 aa8.89□□□□□ -0.99
CSMD1-213ENST00000523488 TRAF5O00463 557 aa8.89□□□□□ -0.99
CSMD1-213ENST00000523488 CDH16O75309 829 aa8.89□□□□□ -0.99
CSMD1-213ENST00000523488 FKBP6O75344 327 aa8.89□□□□□ -0.99
CSMD1-213ENST00000523488 CHRNB2P17787 502 aa8.89□□□□□ -0.99
CSMD1-213ENST00000523488 PTPN7P35236 360 aa8.89□□□□□ -0.99
CSMD1-213ENST00000523488 CCNFP41002 786 aa8.89□□□□□ -0.99
CSMD1-213ENST00000523488 ETV4P43268 484 aa8.89□□□□□ -0.99
CSMD1-213ENST00000523488 PSMD7P51665 324 aa8.89□□□□□ -0.99
CSMD1-213ENST00000523488 GEMIN4P57678 1058 aaKnown RBP8.89□□□□□ -0.99
CSMD1-213ENST00000523488 IL9RQ01113 521 aa8.89□□□□□ -0.99
CSMD1-213ENST00000523488 CDR2Q01850 454 aa8.89□□□□□ -0.99
CSMD1-213ENST00000523488 CALCOCO2Q13137 446 aa8.89□□□□□ -0.99
CSMD1-213ENST00000523488 CBX3Q13185 183 aa8.89□□□□□ -0.99
CSMD1-213ENST00000523488 TBCCQ15814 346 aa8.89□□□□□ -0.99
CSMD1-213ENST00000523488 TRMT5Q32P41 509 aaKnown RBP8.89□□□□□ -0.99
CSMD1-213ENST00000523488 PDCD4Q53EL6 469 aaKnown RBP8.89□□□□□ -0.99
CSMD1-213ENST00000523488 SLC44A4Q53GD3 710 aa8.89□□□□□ -0.99
CSMD1-213ENST00000523488 METTL24Q5JXM2 366 aa8.89□□□□□ -0.99
CSMD1-213ENST00000523488 KSR1Q8IVT5 923 aa8.89□□□□□ -0.99
CSMD1-213ENST00000523488 NT5C3AQ9H0P0 336 aa8.89□□□□□ -0.99
CSMD1-213ENST00000523488 PHTF1Q9UMS5 762 aa8.89□□□□□ -0.99
CSMD1-213ENST00000523488 FAM47DPA6NHR8 397 aa8.88□□□□□ -0.99
CSMD1-213ENST00000523488 FAM189A1O60320 539 aa8.88□□□□□ -0.99
CSMD1-213ENST00000523488 DLDP09622 509 aaKnown RBP8.88□□□□□ -0.99
CSMD1-213ENST00000523488 VEGFAP15692 232 aaPredicted RBP8.88□□□□□ -0.99
CSMD1-213ENST00000523488 LONRF1Q17RB8 773 aa8.88□□□□□ -0.99
CSMD1-213ENST00000523488 C6orf163Q5TEZ5 329 aa8.88□□□□□ -0.99
CSMD1-213ENST00000523488 ALKBH5Q6P6C2 394 aaKnown RBP8.88□□□□□ -0.99
CSMD1-213ENST00000523488 IFNL2Q8IZJ0 200 aa8.88□□□□□ -0.99
CSMD1-213ENST00000523488 AHI1Q8N157 1196 aa8.88□□□□□ -0.99
CSMD1-213ENST00000523488 PDCD7Q8N8D1 485 aaKnown RBP8.88□□□□□ -0.99
CSMD1-213ENST00000523488 WDR60Q8WVS4 1066 aa8.88□□□□□ -0.99
CSMD1-213ENST00000523488 GLG1Q92896 1179 aa8.88□□□□□ -0.99
CSMD1-213ENST00000523488 EXOC7Q9UPT5 735 aa8.88□□□□□ -0.99
CSMD1-213ENST00000523488 DNM3Q9UQ16 869 aa8.88□□□□□ -0.99
CSMD1-213ENST00000523488 MTMR7Q9Y216 660 aa8.88□□□□□ -0.99
CSMD1-213ENST00000523488 NUB1Q9Y5A7 615 aa8.88□□□□□ -0.99
CSMD1-213ENST00000523488 TMEM110-MUSTN1A8MSY1 372 aa8.88□□□□□ -0.99
CSMD1-213ENST00000523488 IRS4O14654 1257 aaPredicted RBP8.88□□□□□ -0.99
CSMD1-213ENST00000523488 ACSL3O95573 720 aa8.88□□□□□ -0.99
CSMD1-213ENST00000523488 CYP1A2P05177 515 aa8.88□□□□□ -0.99
CSMD1-213ENST00000523488 H2AFZP0C0S5 128 aa8.88□□□□□ -0.99
CSMD1-213ENST00000523488 ANPEPP15144 967 aa8.88□□□□□ -0.99
CSMD1-213ENST00000523488 YBX3P16989 372 aaKnown RBP eCLIP8.88□□□□□ -0.99
CSMD1-213ENST00000523488 DSG1Q02413 1049 aa8.88□□□□□ -0.99
CSMD1-213ENST00000523488 ZBTB16Q05516 673 aa8.88□□□□□ -0.99
CSMD1-213ENST00000523488 RASGRF1Q13972 1273 aa8.88□□□□□ -0.99
CSMD1-213ENST00000523488 INF2Q27J81 1249 aa8.88□□□□□ -0.99
CSMD1-213ENST00000523488 H2AFVQ71UI9 128 aa8.88□□□□□ -0.99
CSMD1-213ENST00000523488 ADGRA1Q86SQ6 560 aa8.88□□□□□ -0.99
CSMD1-213ENST00000523488 TMEM110Q86TL2 294 aa8.88□□□□□ -0.99
CSMD1-213ENST00000523488 RHOT2Q8IXI1 618 aa8.88□□□□□ -0.99
CSMD1-213ENST00000523488 METTL25Q8N6Q8 603 aa8.88□□□□□ -0.99
CSMD1-213ENST00000523488 RAB3IL1Q8TBN0 382 aa8.88□□□□□ -0.99
CSMD1-213ENST00000523488 C17orf50Q8WW18 174 aa8.88□□□□□ -0.99
CSMD1-213ENST00000523488 TDRD1Q9BXT4 1180 aaKnown RBP8.88□□□□□ -0.99
CSMD1-213ENST00000523488 WNT8AQ9H1J5 351 aa8.88□□□□□ -0.99
CSMD1-213ENST00000523488 DMAC2Q9NW81 257 aa8.88□□□□□ -0.99
CSMD1-213ENST00000523488 NINJ2Q9NZG7 142 aa8.88□□□□□ -0.99
CSMD1-213ENST00000523488 ARMCX3Q9UH62 379 aaPredicted RBP8.88□□□□□ -0.99
CSMD1-213ENST00000523488 DMTF1Q9Y222 760 aa8.88□□□□□ -0.99
CSMD1-213ENST00000523488 SH3PXD2BA1X283 911 aa8.88□□□□□ -0.99
CSMD1-213ENST00000523488 RASA4BC9J798 803 aa8.88□□□□□ -0.99
CSMD1-213ENST00000523488 RASA4O43374 803 aa8.88□□□□□ -0.99
CSMD1-213ENST00000523488 TM7SF2O76062 418 aa8.88□□□□□ -0.99
CSMD1-213ENST00000523488 BAG2O95816 211 aa8.88□□□□□ -0.99
CSMD1-213ENST00000523488 UQCRBP14927 111 aa8.88□□□□□ -0.99
CSMD1-213ENST00000523488 ZFXP17010 805 aaPredicted RBP8.88□□□□□ -0.99
CSMD1-213ENST00000523488 LMNB1P20700 586 aa8.88□□□□□ -0.99
CSMD1-213ENST00000523488 L1CAMP32004 1257 aa8.88□□□□□ -0.99
CSMD1-213ENST00000523488 CTSWP56202 376 aa8.88□□□□□ -0.99
CSMD1-213ENST00000523488 IFIT1BQ5T764 474 aaKnown RBP8.88□□□□□ -0.99
CSMD1-213ENST00000523488 IL23RQ5VWK5 629 aa8.88□□□□□ -0.99
CSMD1-213ENST00000523488 CHAC2Q8WUX2 184 aa8.88□□□□□ -0.99
CSMD1-213ENST00000523488 NMD3Q96D46 503 aaKnown RBP8.88□□□□□ -0.99
CSMD1-213ENST00000523488 VPS11Q9H270 941 aa8.88□□□□□ -0.99
CSMD1-213ENST00000523488 PALMDQ9NP74 551 aa8.88□□□□□ -0.99
CSMD1-213ENST00000523488 TBK1Q9UHD2 729 aa8.88□□□□□ -0.99
CSMD1-213ENST00000523488 CYP3A7-CYP3A51PA0A087WV96 503 aa8.87□□□□□ -0.99
CSMD1-213ENST00000523488 ANKRD62A6NC57 917 aa8.87□□□□□ -0.99
CSMD1-213ENST00000523488 C1QAP02745 245 aa8.87□□□□□ -0.99
CSMD1-213ENST00000523488 CYP3A7P24462 503 aa8.87□□□□□ -0.99
CSMD1-213ENST00000523488 MAN1A1P33908 653 aa8.87□□□□□ -0.99
CSMD1-213ENST00000523488 COPB2P35606 906 aa8.87□□□□□ -0.99
CSMD1-213ENST00000523488 NUMBP49757 651 aa8.87□□□□□ -0.99
CSMD1-213ENST00000523488 PRKD1Q15139 912 aaPredicted RBP8.87□□□□□ -0.99
CSMD1-213ENST00000523488 PPP1R18Q6NYC8 613 aa8.87□□□□□ -0.99
CSMD1-213ENST00000523488 B3GNT6Q6ZMB0 384 aa8.87□□□□□ -0.99
CSMD1-213ENST00000523488 KRT25Q7Z3Z0 450 aa8.87□□□□□ -0.99
CSMD1-213ENST00000523488 PHLDB2Q86SQ0 1253 aa8.87□□□□□ -0.99
CSMD1-213ENST00000523488 CALML4Q96GE6 196 aa8.87□□□□□ -0.99
CSMD1-213ENST00000523488 ZFRQ96KR1 1074 aaKnown RBP8.87□□□□□ -0.99
CSMD1-213ENST00000523488 UBAP1Q9NZ09 502 aa8.87□□□□□ -0.99
CSMD1-213ENST00000523488 SLC24A2Q9UI40 661 aa8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 1338.1 ms