RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 NIF3L1Q9GZT8 377 aa17.17■□□□□ 0.34
NUP54-214ENST00000514307 CRISPLD2Q9H0B8 497 aa17.17■□□□□ 0.34
NUP54-214ENST00000514307 VRTNQ9H8Y1 702 aa17.17■□□□□ 0.34
NUP54-214ENST00000514307 CYP3A43Q9HB55 503 aa17.17■□□□□ 0.34
NUP54-214ENST00000514307 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.17■□□□□ 0.34
NUP54-214ENST00000514307 FAM105AQ9NUU6 356 aa17.17■□□□□ 0.34
NUP54-214ENST00000514307 INTUQ9ULD6 942 aa17.17■□□□□ 0.34
NUP54-214ENST00000514307 AGAP1Q9UPQ3 857 aa17.17■□□□□ 0.34
NUP54-214ENST00000514307 NUB1Q9Y5A7 615 aa17.17■□□□□ 0.34
NUP54-214ENST00000514307 PAXBP1Q9Y5B6 917 aa17.17■□□□□ 0.34
NUP54-214ENST00000514307 PCDHB4Q9Y5E5 795 aa17.17■□□□□ 0.34
NUP54-214ENST00000514307 EVPLQ92817 2033 aa17.16■□□□□ 0.34
NUP54-214ENST00000514307 DCDC2CA8MYV0 355 aa17.16■□□□□ 0.34
NUP54-214ENST00000514307 CYP26A1O43174 497 aa17.16■□□□□ 0.34
NUP54-214ENST00000514307 RECQL4O94761 1208 aa17.16■□□□□ 0.34
NUP54-214ENST00000514307 PARNO95453 639 aaKnown RBP17.16■□□□□ 0.34
NUP54-214ENST00000514307 ITGB3P05106 788 aa17.16■□□□□ 0.34
NUP54-214ENST00000514307 GHRP10912 638 aa17.16■□□□□ 0.34
NUP54-214ENST00000514307 SELPP16109 830 aa17.16■□□□□ 0.34
NUP54-214ENST00000514307 CD52P31358 61 aa17.16■□□□□ 0.34
NUP54-214ENST00000514307 CYP27A1Q02318 531 aa17.16■□□□□ 0.34
NUP54-214ENST00000514307 GFPT1Q06210 699 aaPredicted RBP17.16■□□□□ 0.34
NUP54-214ENST00000514307 ALKBH5Q6P6C2 394 aaKnown RBP17.16■□□□□ 0.34
NUP54-214ENST00000514307 C1orf127Q8N9H9 656 aa17.16■□□□□ 0.34
NUP54-214ENST00000514307 ANKLE1Q8NAG6 615 aa17.16■□□□□ 0.34
NUP54-214ENST00000514307 SMG8Q8ND04 991 aaKnown RBP17.16■□□□□ 0.34
NUP54-214ENST00000514307 HPDLQ96IR7 371 aa17.16■□□□□ 0.34
NUP54-214ENST00000514307 C16orf45Q96MC5 204 aaPredicted RBP17.16■□□□□ 0.34
NUP54-214ENST00000514307 NXF3Q9H4D5 531 aaKnown RBP17.16■□□□□ 0.34
NUP54-214ENST00000514307 LZTFL1Q9NQ48 299 aa17.16■□□□□ 0.34
NUP54-214ENST00000514307 SLC38A7Q9NVC3 462 aa17.16■□□□□ 0.34
NUP54-214ENST00000514307 CNTN6Q9UQ52 1028 aa17.16■□□□□ 0.34
NUP54-214ENST00000514307 GIT1Q9Y2X7 761 aa17.16■□□□□ 0.34
NUP54-214ENST00000514307 SIP14410 1827 aa17.16■□□□□ 0.34
NUP54-214ENST00000514307 SCN10AQ9Y5Y9 1956 aa17.15■□□□□ 0.34
NUP54-214ENST00000514307 A0A087X0T9 212 aa17.15■□□□□ 0.34
NUP54-214ENST00000514307 SMIM28A0A1B0GU29 152 aa17.15■□□□□ 0.34
NUP54-214ENST00000514307 PJA2O43164 708 aa17.15■□□□□ 0.34
NUP54-214ENST00000514307 FAM228BP0C875 321 aa17.15■□□□□ 0.34
NUP54-214ENST00000514307 AKAP5P24588 427 aa17.15■□□□□ 0.34
NUP54-214ENST00000514307 PNPLA4P41247 253 aa17.15■□□□□ 0.34
NUP54-214ENST00000514307 GNG11P61952 73 aa17.15■□□□□ 0.34
NUP54-214ENST00000514307 WDR72Q3MJ13 1102 aa17.15■□□□□ 0.34
NUP54-214ENST00000514307 PPP1R2P3Q6NXS1 205 aa17.15■□□□□ 0.34
NUP54-214ENST00000514307 RNF10Q8N5U6 811 aaKnown RBP17.15■□□□□ 0.34
NUP54-214ENST00000514307 LRRC52Q8N7C0 313 aa17.15■□□□□ 0.34
NUP54-214ENST00000514307 U2AF1L4Q8WU68 220 aaKnown RBP17.15■□□□□ 0.34
NUP54-214ENST00000514307 KAT5Q92993 513 aa17.15■□□□□ 0.34
NUP54-214ENST00000514307 ARMC5Q96C12 935 aa17.15■□□□□ 0.34
NUP54-214ENST00000514307 FTHL17Q9BXU8 183 aa17.15■□□□□ 0.34
NUP54-214ENST00000514307 AGO3Q9H9G7 860 aaKnown RBP17.15■□□□□ 0.34
NUP54-214ENST00000514307 APOBEC3GQ9HC16 384 aaKnown RBP17.15■□□□□ 0.34
NUP54-214ENST00000514307 RNF216Q9NWF9 866 aaPredicted RBP17.15■□□□□ 0.34
NUP54-214ENST00000514307 NAGPAQ9UK23 515 aa17.15■□□□□ 0.34
NUP54-214ENST00000514307 HES2Q9Y543 173 aa17.15■□□□□ 0.34
NUP54-214ENST00000514307 A0A0U1RQF3 1178 aa17.14■□□□□ 0.33
NUP54-214ENST00000514307 EOMESO95936 686 aa17.14■□□□□ 0.33
NUP54-214ENST00000514307 H2AFZP0C0S5 128 aa17.14■□□□□ 0.33
NUP54-214ENST00000514307 GZMAP12544 262 aa17.14■□□□□ 0.33
NUP54-214ENST00000514307 PAX3P23760 479 aa17.14■□□□□ 0.33
NUP54-214ENST00000514307 PDE6CP51160 858 aa17.14■□□□□ 0.33
NUP54-214ENST00000514307 DSC3Q14574 896 aa17.14■□□□□ 0.33
NUP54-214ENST00000514307 IFI16Q16666 785 aaKnown RBP17.14■□□□□ 0.33
NUP54-214ENST00000514307 SPOPLQ6IQ16 392 aa17.14■□□□□ 0.33
NUP54-214ENST00000514307 SLC39A5Q6ZMH5 540 aa17.14■□□□□ 0.33
NUP54-214ENST00000514307 H2AFVQ71UI9 128 aa17.14■□□□□ 0.33
NUP54-214ENST00000514307 SLC30A5Q8TAD4 765 aa17.14■□□□□ 0.33
NUP54-214ENST00000514307 ZNF333Q96JL9 665 aa17.14■□□□□ 0.33
NUP54-214ENST00000514307 CALR3Q96L12 384 aaKnown RBP17.14■□□□□ 0.33
NUP54-214ENST00000514307 TOX2Q96NM4 488 aa17.14■□□□□ 0.33
NUP54-214ENST00000514307 ADAM2Q99965 735 aa17.14■□□□□ 0.33
NUP54-214ENST00000514307 XYLT2Q9H1B5 865 aa17.14■□□□□ 0.33
NUP54-214ENST00000514307 PDCL3Q9H2J4 239 aa17.14■□□□□ 0.33
NUP54-214ENST00000514307 NXF1Q9UBU9 619 aaKnown RBP17.14■□□□□ 0.33
NUP54-214ENST00000514307 KIAA1257Q9ULG3 409 aa17.14■□□□□ 0.33
NUP54-214ENST00000514307 REXO2Q9Y3B8 237 aaKnown RBP17.14■□□□□ 0.33
NUP54-214ENST00000514307 PITPNM1O00562 1244 aa17.13■□□□□ 0.33
NUP54-214ENST00000514307 MEFVO15553 781 aaPredicted RBP17.13■□□□□ 0.33
NUP54-214ENST00000514307 FAM163BP0C2L3 166 aa17.13■□□□□ 0.33
NUP54-214ENST00000514307 CYP11B1P15538 503 aa17.13■□□□□ 0.33
NUP54-214ENST00000514307 ACO1P21399 889 aaKnown RBP17.13■□□□□ 0.33
NUP54-214ENST00000514307 POLR2BP30876 1174 aaKnown RBP17.13■□□□□ 0.33
NUP54-214ENST00000514307 CASQ1P31415 396 aa17.13■□□□□ 0.33
NUP54-214ENST00000514307 TNNC1P63316 161 aa17.13■□□□□ 0.33
NUP54-214ENST00000514307 CDR2Q01850 454 aa17.13■□□□□ 0.33
NUP54-214ENST00000514307 C1orf53Q5VUE5 145 aa17.13■□□□□ 0.33
NUP54-214ENST00000514307 LRRC8DQ7L1W4 858 aa17.13■□□□□ 0.33
NUP54-214ENST00000514307 ANKRD33Q7Z3H0 272 aa17.13■□□□□ 0.33
NUP54-214ENST00000514307 FAM126BQ8IXS8 530 aa17.13■□□□□ 0.33
NUP54-214ENST00000514307 ZNF592Q92610 1267 aa17.13■□□□□ 0.33
NUP54-214ENST00000514307 RPS6KC1Q96S38 1066 aa17.13■□□□□ 0.33
NUP54-214ENST00000514307 TMEM106CQ9BVX2 250 aa17.13■□□□□ 0.33
NUP54-214ENST00000514307 RNF39Q9H2S5 420 aa17.13■□□□□ 0.33
NUP54-214ENST00000514307 RGS18Q9NS28 235 aa17.13■□□□□ 0.33
NUP54-214ENST00000514307 SEPT11Q9NVA2 429 aaKnown RBP17.13■□□□□ 0.33
NUP54-214ENST00000514307 KLK14Q9P0G3 267 aa17.13■□□□□ 0.33
NUP54-214ENST00000514307 SIX4Q9UIU6 781 aa17.13■□□□□ 0.33
NUP54-214ENST00000514307 GUCA1BQ9UMX6 200 aa17.13■□□□□ 0.33
NUP54-214ENST00000514307 DDX3XO00571 662 aaKnown RBP eCLIP17.12■□□□□ 0.336e-11■□□□□ 8.2
NUP54-214ENST00000514307 ZNF263O14978 683 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms