RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 DRD4P21917 467 aa8.88□□□□□ -0.99
LIMCH1-216ENST00000512820 ELF3P78545 371 aaPredicted RBP8.88□□□□□ -0.99
LIMCH1-216ENST00000512820 SYCP2LQ5T4T6 812 aa8.88□□□□□ -0.99
LIMCH1-216ENST00000512820 SWT1Q5T5J6 900 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-216ENST00000512820 KRT27Q7Z3Y8 459 aa8.88□□□□□ -0.99
LIMCH1-216ENST00000512820 RBM46Q8TBY0 533 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-216ENST00000512820 ALKBH8Q96BT7 664 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-216ENST00000512820 HAO1Q9UJM8 370 aa8.88□□□□□ -0.99
LIMCH1-216ENST00000512820 APOBEC2Q9Y235 224 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-216ENST00000512820 ARL4AP40617 200 aa8.88□□□□□ -0.99
LIMCH1-216ENST00000512820 ERFP50548 548 aa8.88□□□□□ -0.99
LIMCH1-216ENST00000512820 NCOA4Q13772 614 aa8.88□□□□□ -0.99
LIMCH1-216ENST00000512820 VPS72Q15906 364 aa8.88□□□□□ -0.99
LIMCH1-216ENST00000512820 ARSHQ5FYA8 562 aa8.88□□□□□ -0.99
LIMCH1-216ENST00000512820 DUPD1Q68J44 220 aa8.88□□□□□ -0.99
LIMCH1-216ENST00000512820 GMCL1P1Q8NEA9 526 aa8.88□□□□□ -0.99
LIMCH1-216ENST00000512820 TMEM143Q96AN5 459 aa8.88□□□□□ -0.99
LIMCH1-216ENST00000512820 RXFP1Q9HBX9 757 aa8.88□□□□□ -0.99
LIMCH1-216ENST00000512820 CYP26B1Q9NR63 512 aa8.88□□□□□ -0.99
LIMCH1-216ENST00000512820 G3BP2Q9UN86 482 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-216ENST00000512820 L3MBTL1Q9Y468 752 aa8.88□□□□□ -0.99
LIMCH1-216ENST00000512820 PCDHA3Q9Y5H8 950 aa8.88□□□□□ -0.99
LIMCH1-216ENST00000512820 SPEF2Q9C093 1822 aa8.88□□□□□ -0.99
LIMCH1-216ENST00000512820 ENO4A6NNW6 628 aa8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 GPC3P51654 580 aa8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 QPCTQ16769 361 aa8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 GRAMD1BQ3KR37 738 aa8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 RAPH1Q70E73 1250 aa8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 ATXN2LQ8WWM7 1075 aaKnown RBP8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 ZDHHC15Q96MV8 337 aa8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 RANBP17Q9H2T7 1088 aaKnown RBP8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 PSTPIP1O43586 416 aa8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 KRT4P19013 534 aa8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 CDH6P55285 790 aa8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 NOP14P78316 857 aaKnown RBP8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 KLC1Q07866 573 aa8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 SPP2Q13103 211 aa8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 STXBP2Q15833 593 aa8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 DUOXA2Q1HG44 320 aa8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 ZNF572Q7Z3I7 529 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 DNAJC9Q8WXX5 260 aa8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 SLC5A5Q92911 643 aa8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 DNAJC18Q9H819 358 aa8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 JPH1Q9HDC5 661 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 TOPORSQ9NS56 1045 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 ANKEF1Q9NU02 776 aa8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 ABCF3Q9NUQ8 709 aa8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 KDM3BQ7LBC6 1761 aa8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 CYP3A7-CYP3A51PA0A087WV96 503 aa8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 KRT10P13645 584 aa8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 CYP3A7P24462 503 aa8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 EPHB1P54762 984 aa8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 BAATQ14032 418 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 PIGHQ14442 188 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 HYIQ5T013 277 aa8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 C1orf228Q6PIY5 440 aa8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 C1orf186Q6ZWK4 172 aa8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 ST13P4Q8IZP2 240 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 PRELID2Q8N945 189 aa8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 DNAAF3Q8N9W5 541 aa8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 ACSF2Q96CM8 615 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 PPP1R16BQ96T49 567 aa8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 SLC38A10Q9HBR0 1119 aa8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 SMYD2Q9NRG4 433 aa8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 NDE1Q9NXR1 346 aa8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 XPO7Q9UIA9 1087 aaKnown RBP8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 MAGED2Q9UNF1 606 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 CHMP2BQ9UQN3 213 aa8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 AKT3Q9Y243 479 aa8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 M0QYV0 167 aa8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 MEIS2O14770 477 aa8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 CASQ2O14958 399 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 RGL2O15211 777 aa8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 NVLO15381 856 aaKnown RBP8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 NUDT17P0C025 328 aa8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 BCAR1P56945 870 aa8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 AP2B1P63010 937 aa8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 KDSRQ06136 332 aa8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 ZCWPW2Q504Y3 356 aa8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 NOP9Q86U38 636 aaKnown RBP8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 SESTD1Q86VW0 696 aa8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 CCDC125Q86Z20 511 aa8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 EXOC8Q8IYI6 725 aa8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 GABPB2Q8TAK5 448 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 NEUROG2Q9H2A3 272 aa8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 NCANO14594 1321 aa8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 GAKO14976 1311 aa8.87□□□□□ -0.99
LIMCH1-216ENST00000512820 EXTL3O43909 919 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 CRCPO75575 148 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 ENO1P06733 434 aaKnown RBP8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 MARCKSL1P49006 195 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 AP3M2P53677 418 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 GEMIN4P57678 1058 aaKnown RBP8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 OVGP1Q12889 678 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 AUHQ13825 339 aaKnown RBP8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 KIF22Q14807 665 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 CCNG2Q16589 344 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 CLEC16AQ2KHT3 1053 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 ASTE1Q2TB18 679 aaPredicted RBP8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 ZNF568Q3ZCX4 644 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms