RNA–Protein interactions for RNA: ENST00000504761.6

TCOF1-207, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 4,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-207ENST00000504761 DPP3Q9NY33 737 aa14.93□□□□□ -0.02
TCOF1-207ENST00000504761 MYH2Q9UKX2 1941 aa14.93□□□□□ -0.02
TCOF1-207ENST00000504761 A6NNZ2 444 aa14.92□□□□□ -0.02
TCOF1-207ENST00000504761 BNIP3LO60238 219 aa14.92□□□□□ -0.02
TCOF1-207ENST00000504761 CHRNA3P32297 505 aa14.92□□□□□ -0.02
TCOF1-207ENST00000504761 CCT5P48643 541 aa14.92□□□□□ -0.02
TCOF1-207ENST00000504761 ZNF280AP59817 542 aaPredicted RBP14.92□□□□□ -0.02
TCOF1-207ENST00000504761 HSDL1Q3SXM5 330 aa14.92□□□□□ -0.02
TCOF1-207ENST00000504761 TUBB8Q3ZCM7 444 aa14.92□□□□□ -0.02
TCOF1-207ENST00000504761 SIAH1Q8IUQ4 282 aa14.92□□□□□ -0.02
TCOF1-207ENST00000504761 MTMR14Q8NCE2 650 aa14.92□□□□□ -0.02
TCOF1-207ENST00000504761 TAF1DQ9H5J8 278 aaPredicted RBP14.92□□□□□ -0.02
TCOF1-207ENST00000504761 GRID2IPA4D2P6 1211 aa14.92□□□□□ -0.02
TCOF1-207ENST00000504761 RNF225M0QZC1 329 aaPredicted RBP14.92□□□□□ -0.02
TCOF1-207ENST00000504761 CPB1P15086 417 aa14.92□□□□□ -0.02
TCOF1-207ENST00000504761 RRM1P23921 792 aa14.92□□□□□ -0.02
TCOF1-207ENST00000504761 CDR2Q01850 454 aa14.92□□□□□ -0.02
TCOF1-207ENST00000504761 MIIPQ5JXC2 388 aa14.92□□□□□ -0.02
TCOF1-207ENST00000504761 SENP7Q9BQF6 1050 aa14.92□□□□□ -0.02
TCOF1-207ENST00000504761 STAP1Q9ULZ2 295 aa14.92□□□□□ -0.02
TCOF1-207ENST00000504761 SNED1Q8TER0 1413 aa14.92□□□□□ -0.02
TCOF1-207ENST00000504761 ASTN1O14525 1302 aa14.92□□□□□ -0.02
TCOF1-207ENST00000504761 GLTPD2A6NH11 291 aa14.92□□□□□ -0.02
TCOF1-207ENST00000504761 YY1P25490 414 aa14.92□□□□□ -0.02
TCOF1-207ENST00000504761 ACOT1Q86TX2 421 aa14.92□□□□□ -0.02
TCOF1-207ENST00000504761 URGCPQ8TCY9 931 aa14.92□□□□□ -0.02
TCOF1-207ENST00000504761 SPIRE2Q8WWL2 714 aa14.92□□□□□ -0.02
TCOF1-207ENST00000504761 SLC12A6Q9UHW9 1150 aa14.92□□□□□ -0.02
TCOF1-207ENST00000504761 PPFIA4O75335 1185 aa14.92□□□□□ -0.02
TCOF1-207ENST00000504761 PSMC4P43686 418 aa14.92□□□□□ -0.02
TCOF1-207ENST00000504761 C4orf50Q6ZRC1 276 aa14.92□□□□□ -0.02
TCOF1-207ENST00000504761 TMC2Q8TDI7 906 aa14.92□□□□□ -0.02
TCOF1-207ENST00000504761 RIN2Q8WYP3 895 aaPredicted RBP14.92□□□□□ -0.02
TCOF1-207ENST00000504761 ATP8B3O60423 1300 aa14.91□□□□□ -0.02
TCOF1-207ENST00000504761 B3GAT3O94766 335 aa14.91□□□□□ -0.02
TCOF1-207ENST00000504761 STAMBPO95630 424 aa14.91□□□□□ -0.02
TCOF1-207ENST00000504761 AKAP5P24588 427 aa14.91□□□□□ -0.02
TCOF1-207ENST00000504761 MSH2P43246 934 aa14.91□□□□□ -0.02
TCOF1-207ENST00000504761 TLK2Q86UE8 772 aa14.91□□□□□ -0.02
TCOF1-207ENST00000504761 SLITRK6Q9H5Y7 841 aa14.91□□□□□ -0.02
TCOF1-207ENST00000504761 BCAS3Q9H6U6 928 aa14.91□□□□□ -0.02
TCOF1-207ENST00000504761 SMYD2Q9NRG4 433 aa14.91□□□□□ -0.02
TCOF1-207ENST00000504761 CPSF3Q9UKF6 684 aaKnown RBP14.91□□□□□ -0.02
TCOF1-207ENST00000504761 SIK3Q9Y2K2 1263 aa14.91□□□□□ -0.02
TCOF1-207ENST00000504761 WDR91A4D1P6 747 aa14.91□□□□□ -0.02
TCOF1-207ENST00000504761 I3L4J1 428 aa14.91□□□□□ -0.02
TCOF1-207ENST00000504761 LGALS2P05162 132 aa14.91□□□□□ -0.02
TCOF1-207ENST00000504761 GLRA2P23416 452 aa14.91□□□□□ -0.02
TCOF1-207ENST00000504761 C6orf163Q5TEZ5 329 aa14.91□□□□□ -0.02
TCOF1-207ENST00000504761 LBX2Q6XYB7 198 aa14.91□□□□□ -0.02
TCOF1-207ENST00000504761 MAP4K3Q8IVH8 894 aa14.91□□□□□ -0.02
TCOF1-207ENST00000504761 TTC39CQ8N584 583 aa14.91□□□□□ -0.02
TCOF1-207ENST00000504761 LRRN4CLQ8ND94 238 aa14.91□□□□□ -0.02
TCOF1-207ENST00000504761 C7orf43Q8WVR3 580 aa14.91□□□□□ -0.02
TCOF1-207ENST00000504761 MLXIPLQ9NP71 852 aa14.91□□□□□ -0.02
TCOF1-207ENST00000504761 BTBD7Q9P203 1132 aa14.91□□□□□ -0.02
TCOF1-207ENST00000504761 DYNC1LI1Q9Y6G9 523 aaKnown RBP14.91□□□□□ -0.02
TCOF1-207ENST00000504761 RAD51CO43502 376 aa14.91□□□□□ -0.02
TCOF1-207ENST00000504761 TRPA1O75762 1119 aa14.91□□□□□ -0.02
TCOF1-207ENST00000504761 KRT14P02533 472 aa14.91□□□□□ -0.02
TCOF1-207ENST00000504761 NR1D1P20393 614 aa14.91□□□□□ -0.02
TCOF1-207ENST00000504761 CARSP49589 748 aaKnown RBP14.91□□□□□ -0.02
TCOF1-207ENST00000504761 ZNF131P52739 623 aa14.91□□□□□ -0.02
TCOF1-207ENST00000504761 CDH8P55286 799 aa14.91□□□□□ -0.02
TCOF1-207ENST00000504761 KRT17Q04695 432 aa14.91□□□□□ -0.02
TCOF1-207ENST00000504761 ALS2CLQ60I27 953 aa14.91□□□□□ -0.02
TCOF1-207ENST00000504761 CENPUQ71F23 418 aa14.91□□□□□ -0.02
TCOF1-207ENST00000504761 TMEM161BQ8NDZ6 487 aa14.91□□□□□ -0.02
TCOF1-207ENST00000504761 INPP4AQ96PE3 977 aaPredicted RBP14.91□□□□□ -0.02
TCOF1-207ENST00000504761 CGRRF1Q99675 332 aa14.91□□□□□ -0.02
TCOF1-207ENST00000504761 PORCNQ9H237 461 aa14.91□□□□□ -0.02
TCOF1-207ENST00000504761 CISHQ9NSE2 258 aa14.91□□□□□ -0.02
TCOF1-207ENST00000504761 KLHL8Q9P2G9 620 aaPredicted RBP14.91□□□□□ -0.02
TCOF1-207ENST00000504761 FBXL5Q9UKA1 691 aa14.91□□□□□ -0.02
TCOF1-207ENST00000504761 PLA2G6O60733 806 aa14.9□□□□□ -0.02
TCOF1-207ENST00000504761 CLK2P49760 499 aaKnown RBP14.9□□□□□ -0.02
TCOF1-207ENST00000504761 SNTG2Q9NY99 539 aa14.9□□□□□ -0.02
TCOF1-207ENST00000504761 GTF3C4Q9UKN8 822 aa14.9□□□□□ -0.02
TCOF1-207ENST00000504761 PLIN4Q96Q06 1357 aa14.9□□□□□ -0.02
TCOF1-207ENST00000504761 GNL1P36915 607 aaPredicted RBP14.9□□□□□ -0.02
TCOF1-207ENST00000504761 CELF3Q5SZQ8 465 aaKnown RBP14.9□□□□□ -0.02
TCOF1-207ENST00000504761 ACAD10Q6JQN1 1059 aa14.9□□□□□ -0.02
TCOF1-207ENST00000504761 RILPQ96NA2 401 aa14.9□□□□□ -0.02
TCOF1-207ENST00000504761 TINF2Q9BSI4 451 aa14.9□□□□□ -0.02
TCOF1-207ENST00000504761 LRRIQ3A6PVS8 624 aaPredicted RBP14.9□□□□□ -0.02
TCOF1-207ENST00000504761 SPATA31C2B4DYI2 1134 aa14.9□□□□□ -0.02
TCOF1-207ENST00000504761 TGFB1I1O43294 461 aa14.9□□□□□ -0.02
TCOF1-207ENST00000504761 MAP3K6O95382 1288 aa14.9□□□□□ -0.02
TCOF1-207ENST00000504761 KCNMA1Q12791 1236 aa14.9□□□□□ -0.02
TCOF1-207ENST00000504761 PDCLQ13371 301 aa14.9□□□□□ -0.02
TCOF1-207ENST00000504761 GABPB2Q8TAK5 448 aaPredicted RBP14.9□□□□□ -0.02
TCOF1-207ENST00000504761 HASPINQ8TF76 798 aa14.9□□□□□ -0.02
TCOF1-207ENST00000504761 CLEC4DQ8WXI8 215 aa14.9□□□□□ -0.02
TCOF1-207ENST00000504761 CDKL2Q92772 493 aa14.9□□□□□ -0.02
TCOF1-207ENST00000504761 CFAP57Q96MR6 1250 aa14.9□□□□□ -0.02
TCOF1-207ENST00000504761 L2HGDHQ9H9P8 463 aa14.9□□□□□ -0.02
TCOF1-207ENST00000504761 ADAM21Q9UKJ8 722 aa14.9□□□□□ -0.02
TCOF1-207ENST00000504761 IGLV3-22A0A075B6J6 115 aa14.9□□□□□ -0.02
TCOF1-207ENST00000504761 MANSC4A6NHS7 340 aaPredicted RBP14.9□□□□□ -0.02
TCOF1-207ENST00000504761 KBTBD13C9JR72 458 aa14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms