RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 CXXC5Q7LFL8 322 aaKnown RBP5.42□□□□□ -1.54
VPS13A-212ENST00000493341 TAS1R1Q7RTX1 841 aa5.42□□□□□ -1.54
VPS13A-212ENST00000493341 LRRTM4Q86VH4 590 aa5.42□□□□□ -1.54
VPS13A-212ENST00000493341 UNC5BQ8IZJ1 945 aa5.42□□□□□ -1.54
VPS13A-212ENST00000493341 DCBLD1Q8N8Z6 715 aa5.42□□□□□ -1.54
VPS13A-212ENST00000493341 CYP2W1Q8TAV3 490 aa5.42□□□□□ -1.54
VPS13A-212ENST00000493341 ERP27Q96DN0 273 aa5.42□□□□□ -1.54
VPS13A-212ENST00000493341 TMEM209Q96SK2 561 aa5.42□□□□□ -1.54
VPS13A-212ENST00000493341 MAGEB5Q9BZ81 275 aa5.42□□□□□ -1.54
VPS13A-212ENST00000493341 BLOC1S4Q9NUP1 217 aa5.42□□□□□ -1.54
VPS13A-212ENST00000493341 ZNF212Q9UDV6 495 aa5.42□□□□□ -1.54
VPS13A-212ENST00000493341 Q9UFV3 132 aa5.42□□□□□ -1.54
VPS13A-212ENST00000493341 SCAF8Q9UPN6 1271 aaKnown RBP5.42□□□□□ -1.54
VPS13A-212ENST00000493341 HMX3A6NHT5 357 aa5.41□□□□□ -1.54
VPS13A-212ENST00000493341 TMEM233B4DJY2 109 aa5.41□□□□□ -1.54
VPS13A-212ENST00000493341 AREL1O15033 823 aa5.41□□□□□ -1.54
VPS13A-212ENST00000493341 RASSF9O75901 435 aa5.41□□□□□ -1.54
VPS13A-212ENST00000493341 ATP1A3P13637 1013 aa5.41□□□□□ -1.54
VPS13A-212ENST00000493341 GUCY1A2P33402 732 aa5.41□□□□□ -1.54
VPS13A-212ENST00000493341 TUBP50607 506 aa5.41□□□□□ -1.54
VPS13A-212ENST00000493341 FOXO4P98177 505 aa5.41□□□□□ -1.54
VPS13A-212ENST00000493341 ZNF200P98182 395 aaPredicted RBP5.41□□□□□ -1.54
VPS13A-212ENST00000493341 SDR16C5Q8N3Y7 309 aa5.41□□□□□ -1.54
VPS13A-212ENST00000493341 SLC15A4Q8N697 577 aa5.41□□□□□ -1.54
VPS13A-212ENST00000493341 NKD2Q969F2 451 aaPredicted RBP5.41□□□□□ -1.54
VPS13A-212ENST00000493341 DPH1Q9BZG8 443 aa5.41□□□□□ -1.54
VPS13A-212ENST00000493341 RNF32Q9H0A6 362 aa5.41□□□□□ -1.54
VPS13A-212ENST00000493341 CHST8Q9H2A9 424 aa5.41□□□□□ -1.54
VPS13A-212ENST00000493341 UBN1Q9NPG3 1134 aa5.41□□□□□ -1.54
VPS13A-212ENST00000493341 GPRC5DQ9NZD1 345 aa5.41□□□□□ -1.54
VPS13A-212ENST00000493341 KIF17Q9P2E2 1029 aa5.41□□□□□ -1.54
VPS13A-212ENST00000493341 KLHL14Q9P2G3 628 aa5.41□□□□□ -1.54
VPS13A-212ENST00000493341 SLC45A1Q9Y2W3 748 aa5.41□□□□□ -1.54
VPS13A-212ENST00000493341 A6NLC8 198 aa5.41□□□□□ -1.54
VPS13A-212ENST00000493341 CLCA1A8K7I4 914 aa5.41□□□□□ -1.54
VPS13A-212ENST00000493341 ALDH1A2O94788 518 aa5.41□□□□□ -1.54
VPS13A-212ENST00000493341 BAIAP3O94812 1187 aa5.41□□□□□ -1.54
VPS13A-212ENST00000493341 GNAI3P08754 354 aa5.41□□□□□ -1.54
VPS13A-212ENST00000493341 H2AFB1P0C5Y9 115 aa5.41□□□□□ -1.54
VPS13A-212ENST00000493341 H2AFB2P0C5Z0 115 aa5.41□□□□□ -1.54
VPS13A-212ENST00000493341 GNAI1P63096 354 aa5.41□□□□□ -1.54
VPS13A-212ENST00000493341 DOC2BQ14184 412 aa5.41□□□□□ -1.54
VPS13A-212ENST00000493341 LMBRD2Q68DH5 695 aaPredicted RBP5.41□□□□□ -1.54
VPS13A-212ENST00000493341 BORAQ6PGQ7 559 aa5.41□□□□□ -1.54
VPS13A-212ENST00000493341 C2CD5Q86YS7 1000 aa5.41□□□□□ -1.54
VPS13A-212ENST00000493341 WFDC3Q8IUB2 231 aa5.41□□□□□ -1.54
VPS13A-212ENST00000493341 FTSJ3Q8IY81 847 aaKnown RBP5.41□□□□□ -1.54
VPS13A-212ENST00000493341 STT3BQ8TCJ2 826 aa5.41□□□□□ -1.54
VPS13A-212ENST00000493341 DHX36Q9H2U1 1008 aaKnown RBP5.41□□□□□ -1.54
VPS13A-212ENST00000493341 WASH6PQ9NQA3 447 aa5.41□□□□□ -1.54
VPS13A-212ENST00000493341 KCND1Q9NSA2 647 aa5.41□□□□□ -1.54
VPS13A-212ENST00000493341 ST6GALNAC1Q9NSC7 600 aaPredicted RBP5.41□□□□□ -1.54
VPS13A-212ENST00000493341 SIDT1Q9NXL6 827 aaKnown RBP5.41□□□□□ -1.54
VPS13A-212ENST00000493341 ING3Q9NXR8 418 aa5.41□□□□□ -1.54
VPS13A-212ENST00000493341 YBX2Q9Y2T7 364 aaKnown RBP5.41□□□□□ -1.54
VPS13A-212ENST00000493341 TMEM98Q9Y2Y6 226 aa5.41□□□□□ -1.54
VPS13A-212ENST00000493341 ASNA1O43681 348 aa5.4□□□□□ -1.54
VPS13A-212ENST00000493341 SBK3P0C264 359 aa5.4□□□□□ -1.54
VPS13A-212ENST00000493341 CRHR1P34998 444 aa5.4□□□□□ -1.54
VPS13A-212ENST00000493341 KCNQ1P51787 676 aa5.4□□□□□ -1.54
VPS13A-212ENST00000493341 NUCB1Q02818 461 aa5.4□□□□□ -1.54
VPS13A-212ENST00000493341 TMEM62Q0P6H9 643 aa5.4□□□□□ -1.54
VPS13A-212ENST00000493341 FAM110CQ1W6H9 321 aa5.4□□□□□ -1.54
VPS13A-212ENST00000493341 GPATCH4Q5T3I0 446 aaKnown RBP5.4□□□□□ -1.54
VPS13A-212ENST00000493341 CCDC30Q5VVM6 783 aa5.4□□□□□ -1.54
VPS13A-212ENST00000493341 KLHL17Q6TDP4 642 aa5.4□□□□□ -1.54
VPS13A-212ENST00000493341 SLC51AQ86UW1 340 aa5.4□□□□□ -1.54
VPS13A-212ENST00000493341 TRMT2AQ8IZ69 625 aaKnown RBP5.4□□□□□ -1.54
VPS13A-212ENST00000493341 SIMC1Q8NDZ2 872 aa5.4□□□□□ -1.54
VPS13A-212ENST00000493341 IPCEF1Q8WWN9 437 aaPredicted RBP5.4□□□□□ -1.54
VPS13A-212ENST00000493341 MAELQ96JY0 434 aaKnown RBP5.4□□□□□ -1.54
VPS13A-212ENST00000493341 KATNAL1Q9BW62 490 aa5.4□□□□□ -1.54
VPS13A-212ENST00000493341 C11orf54Q9H0W9 315 aaPredicted RBP5.4□□□□□ -1.54
VPS13A-212ENST00000493341 A1CFQ9NQ94 594 aaKnown RBP5.4□□□□□ -1.54
VPS13A-212ENST00000493341 NECTIN3Q9NQS3 549 aa5.4□□□□□ -1.54
VPS13A-212ENST00000493341 IRAK4Q9NWZ3 460 aa5.4□□□□□ -1.54
VPS13A-212ENST00000493341 SRP68Q9UHB9 627 aaKnown RBP5.4□□□□□ -1.54
VPS13A-212ENST00000493341 SLC13A4Q9UKG4 626 aa5.4□□□□□ -1.54
VPS13A-212ENST00000493341 CROTQ9UKG9 612 aa5.4□□□□□ -1.54
VPS13A-212ENST00000493341 A0A0B4J269 797 aa5.4□□□□□ -1.55
VPS13A-212ENST00000493341 MYO1CO00159 1063 aa5.4□□□□□ -1.55
VPS13A-212ENST00000493341 WNT10BO00744 389 aa5.4□□□□□ -1.55
VPS13A-212ENST00000493341 GRM6O15303 877 aa5.4□□□□□ -1.55
VPS13A-212ENST00000493341 SOAT2O75908 522 aa5.4□□□□□ -1.55
VPS13A-212ENST00000493341 GASTP01350 101 aa5.4□□□□□ -1.55
VPS13A-212ENST00000493341 C8BP07358 591 aa5.4□□□□□ -1.55
VPS13A-212ENST00000493341 IL1R1P14778 569 aa5.4□□□□□ -1.55
VPS13A-212ENST00000493341 MC3RP41968 323 aa5.4□□□□□ -1.55
VPS13A-212ENST00000493341 ALDH1A3P47895 512 aa5.4□□□□□ -1.55
VPS13A-212ENST00000493341 ATP2B3Q16720 1220 aa5.4□□□□□ -1.55
VPS13A-212ENST00000493341 ADCK5Q3MIX3 580 aa5.4□□□□□ -1.55
VPS13A-212ENST00000493341 TMEM200BQ69YZ2 307 aa5.4□□□□□ -1.55
VPS13A-212ENST00000493341 C4orf50Q6ZRC1 276 aa5.4□□□□□ -1.55
VPS13A-212ENST00000493341 USP49Q70CQ1 688 aa5.4□□□□□ -1.55
VPS13A-212ENST00000493341 LILRA3Q8N6C8 439 aaPredicted RBP5.4□□□□□ -1.55
VPS13A-212ENST00000493341 VGLL2Q8N8G2 317 aa5.4□□□□□ -1.55
VPS13A-212ENST00000493341 PCYOX1LQ8NBM8 494 aa5.4□□□□□ -1.55
VPS13A-212ENST00000493341 FLCNQ8NFG4 579 aa5.4□□□□□ -1.55
VPS13A-212ENST00000493341 OR56A3Q8NH54 315 aa5.4□□□□□ -1.55
VPS13A-212ENST00000493341 ABHD4Q8TB40 342 aa5.4□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 83.4 ms