RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 PPM1NQ8N819 430 aa4.23□□□□□ -1.73
CPSF3-205ENST00000489629 ABCF1Q8NE71 845 aaKnown RBP eCLIP4.23□□□□□ -1.73
CPSF3-205ENST00000489629 C1orf162Q8NEQ5 155 aaPredicted RBP4.23□□□□□ -1.73
CPSF3-205ENST00000489629 NLGN4YQ8NFZ3 816 aaPredicted RBP4.23□□□□□ -1.73
CPSF3-205ENST00000489629 TBC1D15Q8TC07 691 aa4.23□□□□□ -1.73
CPSF3-205ENST00000489629 SSH3Q8TE77 659 aa4.23□□□□□ -1.73
CPSF3-205ENST00000489629 JADE3Q92613 823 aa4.23□□□□□ -1.73
CPSF3-205ENST00000489629 NELL1Q92832 810 aa4.23□□□□□ -1.73
CPSF3-205ENST00000489629 PTCD3Q96EY7 689 aaKnown RBP4.23□□□□□ -1.73
CPSF3-205ENST00000489629 C11orf54Q9H0W9 315 aaPredicted RBP4.23□□□□□ -1.73
CPSF3-205ENST00000489629 TMX1Q9H3N1 280 aa4.23□□□□□ -1.73
CPSF3-205ENST00000489629 RSAD1Q9HA92 442 aa4.23□□□□□ -1.73
CPSF3-205ENST00000489629 A0A1W2PS29 197 aa4.22□□□□□ -1.73
CPSF3-205ENST00000489629 NDUFS2O75306 463 aa4.22□□□□□ -1.73
CPSF3-205ENST00000489629 HAUS5O94927 633 aa4.22□□□□□ -1.73
CPSF3-205ENST00000489629 SBK3P0C264 359 aa4.22□□□□□ -1.73
CPSF3-205ENST00000489629 COLGALT2Q8IYK4 626 aa4.22□□□□□ -1.73
CPSF3-205ENST00000489629 IFI44Q8TCB0 444 aa4.22□□□□□ -1.73
CPSF3-205ENST00000489629 ACTRT2Q8TDY3 377 aa4.22□□□□□ -1.73
CPSF3-205ENST00000489629 PUS7LQ9H0K6 701 aaKnown RBP4.22□□□□□ -1.73
CPSF3-205ENST00000489629 LRIT1Q9P2V4 623 aa4.22□□□□□ -1.73
CPSF3-205ENST00000489629 DMTF1Q9Y222 760 aa4.22□□□□□ -1.73
CPSF3-205ENST00000489629 GRM6O15303 877 aa4.21□□□□□ -1.74
CPSF3-205ENST00000489629 PCDHGA12O60330 932 aa4.21□□□□□ -1.74
CPSF3-205ENST00000489629 RBMXL2O75526 392 aaKnown RBP4.21□□□□□ -1.74
CPSF3-205ENST00000489629 C1RP00736 705 aa4.21□□□□□ -1.74
CPSF3-205ENST00000489629 SRGNP10124 158 aa4.21□□□□□ -1.74
CPSF3-205ENST00000489629 C5AR1P21730 350 aa4.21□□□□□ -1.74
CPSF3-205ENST00000489629 EDNRBP24530 442 aa4.21□□□□□ -1.74
CPSF3-205ENST00000489629 FOLR3P41439 243 aa4.21□□□□□ -1.74
CPSF3-205ENST00000489629 CDC42EP1Q00587 391 aa4.21□□□□□ -1.74
CPSF3-205ENST00000489629 CREMQ03060 361 aa4.21□□□□□ -1.74
CPSF3-205ENST00000489629 SF3B3Q15393 1217 aaKnown RBP4.21□□□□□ -1.74
CPSF3-205ENST00000489629 PABPC1LQ4VXU2 614 aaKnown RBP4.21□□□□□ -1.74
CPSF3-205ENST00000489629 LRCH2Q5VUJ6 765 aa4.21□□□□□ -1.74
CPSF3-205ENST00000489629 ZKSCAN2Q63HK3 967 aa4.21□□□□□ -1.74
CPSF3-205ENST00000489629 VWA1Q6PCB0 445 aa4.21□□□□□ -1.74
CPSF3-205ENST00000489629 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP4.21□□□□□ -1.74
CPSF3-205ENST00000489629 NECAB2Q7Z6G3 386 aa4.21□□□□□ -1.74
CPSF3-205ENST00000489629 AMOTL1Q8IY63 956 aa4.21□□□□□ -1.74
CPSF3-205ENST00000489629 IL17RDQ8NFM7 739 aa4.21□□□□□ -1.74
CPSF3-205ENST00000489629 RAB24Q969Q5 203 aa4.21□□□□□ -1.74
CPSF3-205ENST00000489629 MRGPRX4Q96LA9 322 aa4.21□□□□□ -1.74
CPSF3-205ENST00000489629 DMRTA2Q96SC8 542 aa4.21□□□□□ -1.74
CPSF3-205ENST00000489629 TLR10Q9BXR5 811 aa4.21□□□□□ -1.74
CPSF3-205ENST00000489629 KIAA1586Q9HCI6 787 aa4.21□□□□□ -1.74
CPSF3-205ENST00000489629 SLC5A4Q9NY91 659 aa4.21□□□□□ -1.74
CPSF3-205ENST00000489629 CTTNBP2NLQ9P2B4 639 aa4.21□□□□□ -1.74
CPSF3-205ENST00000489629 IPPQ9Y573 584 aa4.21□□□□□ -1.74
CPSF3-205ENST00000489629 PCDHGA9Q9Y5G4 932 aaKnown RBP4.21□□□□□ -1.74
CPSF3-205ENST00000489629 PCDHGA8Q9Y5G5 932 aa4.21□□□□□ -1.74
CPSF3-205ENST00000489629 PCDHGA7Q9Y5G6 932 aa4.21□□□□□ -1.74
CPSF3-205ENST00000489629 PCDHGA6Q9Y5G7 932 aa4.21□□□□□ -1.74
CPSF3-205ENST00000489629 PCDHGA3Q9Y5H0 932 aa4.21□□□□□ -1.74
CPSF3-205ENST00000489629 PCDHA13Q9Y5I0 950 aa4.21□□□□□ -1.74
CPSF3-205ENST00000489629 TRGV11A0A075B6L2 103 aa4.2□□□□□ -1.74
CPSF3-205ENST00000489629 LRRC3CA6NJW4 275 aa4.2□□□□□ -1.74
CPSF3-205ENST00000489629 FZD9O00144 591 aa4.2□□□□□ -1.74
CPSF3-205ENST00000489629 HTRA2O43464 458 aaPredicted RBP4.2□□□□□ -1.74
CPSF3-205ENST00000489629 PROM1O43490 865 aa4.2□□□□□ -1.74
CPSF3-205ENST00000489629 SGTAO43765 313 aa4.2□□□□□ -1.74
CPSF3-205ENST00000489629 SLC43A1O75387 559 aa4.2□□□□□ -1.74
CPSF3-205ENST00000489629 AGFG2O95081 481 aa4.2□□□□□ -1.74
CPSF3-205ENST00000489629 IARSP41252 1262 aaKnown RBP4.2□□□□□ -1.74
CPSF3-205ENST00000489629 ATP2B3Q16720 1220 aa4.2□□□□□ -1.74
CPSF3-205ENST00000489629 FLYWCH1Q4VC44 716 aa4.2□□□□□ -1.74
CPSF3-205ENST00000489629 UTP14CQ5TAP6 766 aaKnown RBP4.2□□□□□ -1.74
CPSF3-205ENST00000489629 PGM2L1Q6PCE3 622 aa4.2□□□□□ -1.74
CPSF3-205ENST00000489629 TMPRSS9Q7Z410 1059 aa4.2□□□□□ -1.74
CPSF3-205ENST00000489629 ARHGEF25Q86VW2 580 aa4.2□□□□□ -1.74
CPSF3-205ENST00000489629 FAXDC2Q96IV6 333 aa4.2□□□□□ -1.74
CPSF3-205ENST00000489629 TMX3Q96JJ7 454 aa4.2□□□□□ -1.74
CPSF3-205ENST00000489629 SPATA5L1Q9BVQ7 753 aa4.2□□□□□ -1.74
CPSF3-205ENST00000489629 KLK15Q9H2R5 256 aa4.2□□□□□ -1.74
CPSF3-205ENST00000489629 TDP1Q9NUW8 608 aa4.2□□□□□ -1.74
CPSF3-205ENST00000489629 JKAMPQ9P055 326 aa4.2□□□□□ -1.74
CPSF3-205ENST00000489629 SLC17A6Q9P2U8 582 aa4.2□□□□□ -1.74
CPSF3-205ENST00000489629 MCM8Q9UJA3 840 aa4.2□□□□□ -1.74
CPSF3-205ENST00000489629 LIMCH1Q9UPQ0 1083 aa4.2□□□□□ -1.74
CPSF3-205ENST00000489629 FRMD4BQ9Y2L6 1034 aa4.2□□□□□ -1.74
CPSF3-205ENST00000489629 PRAMEF33A0A0G2JMD5 474 aa4.19□□□□□ -1.74
CPSF3-205ENST00000489629 INO80B-WBP1J3KQ70 363 aa4.19□□□□□ -1.74
CPSF3-205ENST00000489629 PEX1O43933 1283 aa4.19□□□□□ -1.74
CPSF3-205ENST00000489629 PRAMEF10O60809 474 aa4.19□□□□□ -1.74
CPSF3-205ENST00000489629 PROP1O75360 226 aa4.19□□□□□ -1.74
CPSF3-205ENST00000489629 MTHFD1P11586 935 aaKnown RBP4.19□□□□□ -1.74
CPSF3-205ENST00000489629 KCNA2P16389 499 aa4.19□□□□□ -1.74
CPSF3-205ENST00000489629 GATA3P23771 443 aa4.19□□□□□ -1.74
CPSF3-205ENST00000489629 ZNF280AP59817 542 aaPredicted RBP4.19□□□□□ -1.74
CPSF3-205ENST00000489629 FOXF2Q12947 444 aa4.19□□□□□ -1.74
CPSF3-205ENST00000489629 IL10RAQ13651 578 aa4.19□□□□□ -1.74
CPSF3-205ENST00000489629 CLUL1Q15846 466 aa4.19□□□□□ -1.74
CPSF3-205ENST00000489629 C3orf36Q3SXR2 165 aa4.19□□□□□ -1.74
CPSF3-205ENST00000489629 MIGA2Q7L4E1 593 aa4.19□□□□□ -1.74
CPSF3-205ENST00000489629 ZNF384Q8TF68 577 aa4.19□□□□□ -1.74
CPSF3-205ENST00000489629 HDAC10Q969S8 669 aa4.19□□□□□ -1.74
CPSF3-205ENST00000489629 LRIG1Q96JA1 1093 aa4.19□□□□□ -1.74
CPSF3-205ENST00000489629 KLHL32Q96NJ5 620 aa4.19□□□□□ -1.74
CPSF3-205ENST00000489629 INO80BQ9C086 356 aaPredicted RBP4.19□□□□□ -1.74
CPSF3-205ENST00000489629 MKS1Q9NXB0 559 aa4.19□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms