RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 HACE1Q8IYU2 909 aa8.88□□□□□ -0.99
USP4-210ENST00000483212 TET1Q8NFU7 2136 aa8.88□□□□□ -0.99
USP4-210ENST00000483212 OR8K1Q8NGG5 319 aa8.88□□□□□ -0.99
USP4-210ENST00000483212 OLIG1Q8TAK6 271 aa8.88□□□□□ -0.99
USP4-210ENST00000483212 SHC3Q92529 594 aa8.88□□□□□ -0.99
USP4-210ENST00000483212 SYN2Q92777 582 aaPredicted RBP8.88□□□□□ -0.99
USP4-210ENST00000483212 PGBD4Q96DM1 585 aa8.88□□□□□ -0.99
USP4-210ENST00000483212 ZNF830Q96NB3 372 aaPredicted RBP8.88□□□□□ -0.99
USP4-210ENST00000483212 NT5C1BQ96P26 610 aa8.88□□□□□ -0.99
USP4-210ENST00000483212 GAD1Q99259 594 aa8.88□□□□□ -0.99
USP4-210ENST00000483212 STK33Q9BYT3 514 aa8.88□□□□□ -0.99
USP4-210ENST00000483212 ELAC1Q9H777 363 aaKnown RBP8.88□□□□□ -0.99
USP4-210ENST00000483212 RSAD1Q9HA92 442 aa8.88□□□□□ -0.99
USP4-210ENST00000483212 NLRC4Q9NPP4 1024 aa8.88□□□□□ -0.99
USP4-210ENST00000483212 DPP3Q9NY33 737 aa8.88□□□□□ -0.99
USP4-210ENST00000483212 AIPL1Q9NZN9 384 aa8.88□□□□□ -0.99
USP4-210ENST00000483212 METRNQ9UJH8 293 aa8.88□□□□□ -0.99
USP4-210ENST00000483212 UBQLN1Q9UMX0 589 aaKnown RBP8.88□□□□□ -0.99
USP4-210ENST00000483212 NUB1Q9Y5A7 615 aa8.88□□□□□ -0.99
USP4-210ENST00000483212 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP8.88□□□□□ -0.99
USP4-210ENST00000483212 PIRO00625 290 aa8.87□□□□□ -0.99
USP4-210ENST00000483212 PHACTR2O75167 634 aa8.87□□□□□ -0.99
USP4-210ENST00000483212 TPM1P09493 284 aa8.87□□□□□ -0.99
USP4-210ENST00000483212 PNMA6AP0CW24 399 aaPredicted RBP8.87□□□□□ -0.99
USP4-210ENST00000483212 ACO1P21399 889 aaKnown RBP8.87□□□□□ -0.99
USP4-210ENST00000483212 POLR2BP30876 1174 aaKnown RBP8.87□□□□□ -0.99
USP4-210ENST00000483212 ATICP31939 592 aa8.87□□□□□ -0.99
USP4-210ENST00000483212 PRKCIP41743 596 aa8.87□□□□□ -0.99
USP4-210ENST00000483212 ASPAP45381 313 aa8.87□□□□□ -0.99
USP4-210ENST00000483212 SCNN1GP51170 649 aa8.87□□□□□ -0.99
USP4-210ENST00000483212 NOP14P78316 857 aaKnown RBP8.87□□□□□ -0.99
USP4-210ENST00000483212 CDK17Q00537 523 aa8.87□□□□□ -0.99
USP4-210ENST00000483212 DRAP1Q14919 205 aaPredicted RBP8.87□□□□□ -0.99
USP4-210ENST00000483212 SGSM1Q2NKQ1 1148 aa8.87□□□□□ -0.99
USP4-210ENST00000483212 CLLU1OSQ5K130 101 aa8.87□□□□□ -0.99
USP4-210ENST00000483212 C9orf57Q5W0N0 161 aa8.87□□□□□ -0.99
USP4-210ENST00000483212 HGSNATQ68CP4 663 aa8.87□□□□□ -0.99
USP4-210ENST00000483212 MFSD5Q6N075 450 aa8.87□□□□□ -0.99
USP4-210ENST00000483212 CNKSR3Q6P9H4 555 aa8.87□□□□□ -0.99
USP4-210ENST00000483212 CACNA2D4Q7Z3S7 1137 aa8.87□□□□□ -0.99
USP4-210ENST00000483212 IRF2BP2Q7Z5L9 587 aa8.87□□□□□ -0.99
USP4-210ENST00000483212 DEFB128Q7Z7B8 93 aa8.87□□□□□ -0.99
USP4-210ENST00000483212 LRRC52Q8N7C0 313 aa8.87□□□□□ -0.99
USP4-210ENST00000483212 BEST2Q8NFU1 509 aa8.87□□□□□ -0.99
USP4-210ENST00000483212 TAF4BQ92750 862 aa8.87□□□□□ -0.99
USP4-210ENST00000483212 FAXDC2Q96IV6 333 aa8.87□□□□□ -0.99
USP4-210ENST00000483212 ARID3AQ99856 593 aa8.87□□□□□ -0.99
USP4-210ENST00000483212 GOLGA2P5Q9HBQ8 144 aa8.87□□□□□ -0.99
USP4-210ENST00000483212 UBE2TQ9NPD8 197 aaPredicted RBP8.87□□□□□ -0.99
USP4-210ENST00000483212 UBN1Q9NPG3 1134 aa8.87□□□□□ -0.99
USP4-210ENST00000483212 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.87□□□□□ -0.99
USP4-210ENST00000483212 TMEM161AQ9NX61 479 aa8.87□□□□□ -0.99
USP4-210ENST00000483212 CNTN6Q9UQ52 1028 aa8.87□□□□□ -0.99
USP4-210ENST00000483212 TULP1O00294 542 aaPredicted RBP8.86□□□□□ -0.99
USP4-210ENST00000483212 FOXN3O00409 490 aaPredicted RBP8.86□□□□□ -0.99
USP4-210ENST00000483212 SPTLC1O15269 473 aa8.86□□□□□ -0.99
USP4-210ENST00000483212 B4GALT3O60512 393 aa8.86□□□□□ -0.99
USP4-210ENST00000483212 C7P10643 843 aa8.86□□□□□ -0.99
USP4-210ENST00000483212 FGFR1P11362 822 aa8.86□□□□□ -0.99
USP4-210ENST00000483212 CSF2RAP15509 400 aa8.86□□□□□ -0.99
USP4-210ENST00000483212 IGFBP6P24592 240 aaPredicted RBP8.86□□□□□ -0.99
USP4-210ENST00000483212 SOX5P35711 763 aa8.86□□□□□ -0.99
USP4-210ENST00000483212 MFAP3P55082 362 aa8.86□□□□□ -0.99
USP4-210ENST00000483212 RBP5P82980 135 aa8.86□□□□□ -0.99
USP4-210ENST00000483212 TRPC3Q13507 836 aa8.86□□□□□ -0.99
USP4-210ENST00000483212 CUL2Q13617 745 aa8.86□□□□□ -0.99
USP4-210ENST00000483212 RAPGEF1Q13905 1077 aa8.86□□□□□ -0.99
USP4-210ENST00000483212 ASTE1Q2TB18 679 aaPredicted RBP8.86□□□□□ -0.99
USP4-210ENST00000483212 ZNF699Q32M78 642 aa8.86□□□□□ -0.99
USP4-210ENST00000483212 WDR44Q5JSH3 913 aa8.86□□□□□ -0.99
USP4-210ENST00000483212 COL13A1Q5TAT6 717 aaPredicted RBP8.86□□□□□ -0.99
USP4-210ENST00000483212 SMYD5Q6GMV2 418 aa8.86□□□□□ -0.99
USP4-210ENST00000483212 CD300LGQ6UXG3 332 aa8.86□□□□□ -0.99
USP4-210ENST00000483212 RAD9BQ6WBX8 426 aa8.86□□□□□ -0.99
USP4-210ENST00000483212 LIN28BQ6ZN17 250 aaKnown RBP eCLIP8.86□□□□□ -0.99
USP4-210ENST00000483212 ENOSF1Q7L5Y1 443 aa8.86□□□□□ -0.99
USP4-210ENST00000483212 LIMS2Q7Z4I7 341 aa8.86□□□□□ -0.99
USP4-210ENST00000483212 GPIHBP1Q8IV16 184 aa8.86□□□□□ -0.99
USP4-210ENST00000483212 FAM71AQ8IYT1 594 aa8.86□□□□□ -0.99
USP4-210ENST00000483212 PPM1KQ8N3J5 372 aa8.86□□□□□ -0.99
USP4-210ENST00000483212 RNF169Q8NCN4 708 aa8.86□□□□□ -0.99
USP4-210ENST00000483212 ZNF397Q8NF99 534 aaPredicted RBP8.86□□□□□ -0.99
USP4-210ENST00000483212 JAKMIP2Q96AA8 810 aa8.86□□□□□ -0.99
USP4-210ENST00000483212 CHP1Q99653 195 aa8.86□□□□□ -0.99
USP4-210ENST00000483212 BAG1Q99933 345 aaPredicted RBP8.86□□□□□ -0.99
USP4-210ENST00000483212 SYT11Q9BT88 431 aa8.86□□□□□ -0.99
USP4-210ENST00000483212 BCO2Q9BYV7 579 aa8.86□□□□□ -0.99
USP4-210ENST00000483212 NIF3L1Q9GZT8 377 aa8.86□□□□□ -0.99
USP4-210ENST00000483212 SDCBP2Q9H190 292 aa8.86□□□□□ -0.99
USP4-210ENST00000483212 NUCKS1Q9H1E3 243 aaKnown RBP8.86□□□□□ -0.99
USP4-210ENST00000483212 PRDM5Q9NQX1 630 aaPredicted RBP8.86□□□□□ -0.99
USP4-210ENST00000483212 ARHGAP20Q9P2F6 1191 aa8.86□□□□□ -0.99
USP4-210ENST00000483212 PYCARDQ9ULZ3 195 aa8.86□□□□□ -0.99
USP4-210ENST00000483212 POLIQ9UNA4 740 aa8.86□□□□□ -0.99
USP4-210ENST00000483212 AGAP1Q9UPQ3 857 aa8.86□□□□□ -0.99
USP4-210ENST00000483212 TRIP11Q15643 1979 aa8.86□□□□□ -0.99
USP4-210ENST00000483212 MICAL3Q7RTP6 2002 aa8.85□□□□□ -0.99
USP4-210ENST00000483212 SOWAHDA6NJG2 315 aa8.85□□□□□ -0.99
USP4-210ENST00000483212 XPOTO43592 962 aaKnown RBP8.85□□□□□ -0.99
USP4-210ENST00000483212 THP07101 528 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms