RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 FOXR2Q6PJQ5 311 aa4.8□□□□□ -1.64
CCDC88A-212ENST00000474059 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP4.8□□□□□ -1.64
CCDC88A-212ENST00000474059 SLC30A5Q8TAD4 765 aa4.8□□□□□ -1.64
CCDC88A-212ENST00000474059 APPBP2Q92624 585 aa4.8□□□□□ -1.64
CCDC88A-212ENST00000474059 FATE1Q969F0 183 aa4.8□□□□□ -1.64
CCDC88A-212ENST00000474059 MED15Q96RN5 788 aa4.8□□□□□ -1.64
CCDC88A-212ENST00000474059 FLRT1Q9NZU1 646 aa4.8□□□□□ -1.64
CCDC88A-212ENST00000474059 RUVBL1Q9Y265 456 aaKnown RBP4.8□□□□□ -1.64
CCDC88A-212ENST00000474059 LINC00473A8K010 186 aa4.79□□□□□ -1.64
CCDC88A-212ENST00000474059 LATS1O95835 1130 aa4.79□□□□□ -1.64
CCDC88A-212ENST00000474059 SESN3P58005 492 aa4.79□□□□□ -1.64
CCDC88A-212ENST00000474059 MGAT2Q10469 447 aa4.79□□□□□ -1.64
CCDC88A-212ENST00000474059 MUM1L1Q5H9M0 696 aa4.79□□□□□ -1.64
CCDC88A-212ENST00000474059 ZNF782Q6ZMW2 699 aaPredicted RBP4.79□□□□□ -1.64
CCDC88A-212ENST00000474059 TMPRSS9Q7Z410 1059 aa4.79□□□□□ -1.64
CCDC88A-212ENST00000474059 KIAA0907Q7Z7F0 614 aaPredicted RBP4.79□□□□□ -1.64
CCDC88A-212ENST00000474059 TMEM125Q96AQ2 219 aa4.79□□□□□ -1.64
CCDC88A-212ENST00000474059 LRIG1Q96JA1 1093 aa4.79□□□□□ -1.64
CCDC88A-212ENST00000474059 ZNF48Q96MX3 618 aaPredicted RBP4.79□□□□□ -1.64
CCDC88A-212ENST00000474059 ZNF804BA4D1E1 1349 aa4.78□□□□□ -1.64
CCDC88A-212ENST00000474059 GPR32O75388 356 aa4.78□□□□□ -1.64
CCDC88A-212ENST00000474059 HNRNPMP52272 730 aaKnown RBP eCLIP4.78□□□□□ -1.64
CCDC88A-212ENST00000474059 EIF2B5Q13144 721 aaKnown RBP4.78□□□□□ -1.64
CCDC88A-212ENST00000474059 KLF9Q13886 244 aaPredicted RBP4.78□□□□□ -1.64
CCDC88A-212ENST00000474059 DHCR24Q15392 516 aa4.78□□□□□ -1.64
CCDC88A-212ENST00000474059 KAZNQ674X7 775 aa4.78□□□□□ -1.64
CCDC88A-212ENST00000474059 ZNF626Q68DY1 528 aa4.78□□□□□ -1.64
CCDC88A-212ENST00000474059 STRA8Q7Z7C7 330 aa4.78□□□□□ -1.64
CCDC88A-212ENST00000474059 FITM2Q8N6M3 262 aa4.78□□□□□ -1.64
CCDC88A-212ENST00000474059 VGLL2Q8N8G2 317 aa4.78□□□□□ -1.64
CCDC88A-212ENST00000474059 DDX55Q8NHQ9 600 aaKnown RBP eCLIP4.78□□□□□ -1.64
CCDC88A-212ENST00000474059 MYCBPAPQ8TBZ2 947 aa4.78□□□□□ -1.64
CCDC88A-212ENST00000474059 TBC1D15Q8TC07 691 aa4.78□□□□□ -1.64
CCDC88A-212ENST00000474059 SREK1Q8WXA9 508 aaKnown RBP4.78□□□□□ -1.64
CCDC88A-212ENST00000474059 ZBTB9Q96C00 473 aa4.78□□□□□ -1.64
CCDC88A-212ENST00000474059 FEZ1Q99689 392 aa4.78□□□□□ -1.64
CCDC88A-212ENST00000474059 ACE2Q9BYF1 805 aaPredicted RBP4.78□□□□□ -1.64
CCDC88A-212ENST00000474059 SERGEFQ9UGK8 458 aa4.78□□□□□ -1.64
CCDC88A-212ENST00000474059 PLAAQ9Y263 795 aa4.78□□□□□ -1.64
CCDC88A-212ENST00000474059 PRAMEF33A0A0G2JMD5 474 aa4.77□□□□□ -1.65
CCDC88A-212ENST00000474059 LINC01548A6NM66 108 aa4.77□□□□□ -1.65
CCDC88A-212ENST00000474059 PDE8AO60658 829 aa4.77□□□□□ -1.65
CCDC88A-212ENST00000474059 PRAMEF10O60809 474 aa4.77□□□□□ -1.65
CCDC88A-212ENST00000474059 PER3P56645 1201 aa4.77□□□□□ -1.65
CCDC88A-212ENST00000474059 SRSF2Q01130 221 aaKnown RBP4.77□□□□□ -1.65
CCDC88A-212ENST00000474059 MC2RQ01718 297 aa4.77□□□□□ -1.65
CCDC88A-212ENST00000474059 EXOSC10Q01780 885 aaKnown RBP4.77□□□□□ -1.65
CCDC88A-212ENST00000474059 MALLQ13021 153 aa4.77□□□□□ -1.65
CCDC88A-212ENST00000474059 PTPRRQ15256 657 aa4.77□□□□□ -1.65
CCDC88A-212ENST00000474059 EZH2Q15910 746 aaKnown RBP4.77□□□□□ -1.65
CCDC88A-212ENST00000474059 TOR2AQ5JU69 321 aa4.77□□□□□ -1.65
CCDC88A-212ENST00000474059 DACT2Q5SW24 774 aa4.77□□□□□ -1.65
CCDC88A-212ENST00000474059 RNF180Q86T96 592 aa4.77□□□□□ -1.65
CCDC88A-212ENST00000474059 TMEM140Q9NV12 185 aa4.77□□□□□ -1.65
CCDC88A-212ENST00000474059 CCDC151A5D8V7 595 aa4.76□□□□□ -1.65
CCDC88A-212ENST00000474059 SBK3P0C264 359 aa4.76□□□□□ -1.65
CCDC88A-212ENST00000474059 SRSF7Q16629 238 aaKnown RBP eCLIP4.76□□□□□ -1.65
CCDC88A-212ENST00000474059 ANO4Q32M45 955 aa4.76□□□□□ -1.65
CCDC88A-212ENST00000474059 NBPF8Q3BBV2 869 aa4.76□□□□□ -1.65
CCDC88A-212ENST00000474059 MTX3Q5HYI7 312 aa4.76□□□□□ -1.65
CCDC88A-212ENST00000474059 GJC2Q5T442 439 aaPredicted RBP4.76□□□□□ -1.65
CCDC88A-212ENST00000474059 ZNF66Q6ZN08 573 aa4.76□□□□□ -1.65
CCDC88A-212ENST00000474059 JAZF1Q86VZ6 243 aa4.76□□□□□ -1.65
CCDC88A-212ENST00000474059 FBXL20Q96IG2 436 aa4.76□□□□□ -1.65
CCDC88A-212ENST00000474059 INTS13Q9NVM9 706 aa4.76□□□□□ -1.65
CCDC88A-212ENST00000474059 ULK1O75385 1050 aa4.75□□□□□ -1.65
CCDC88A-212ENST00000474059 SUN1O94901 812 aa4.75□□□□□ -1.65
CCDC88A-212ENST00000474059 ENDOD1O94919 500 aa4.75□□□□□ -1.65
CCDC88A-212ENST00000474059 ALAS1P13196 640 aa4.75□□□□□ -1.65
CCDC88A-212ENST00000474059 GSPT1P15170 499 aaKnown RBP4.75□□□□□ -1.65
CCDC88A-212ENST00000474059 KCNA2P16389 499 aa4.75□□□□□ -1.65
CCDC88A-212ENST00000474059 GPR3P46089 330 aa4.75□□□□□ -1.65
CCDC88A-212ENST00000474059 MTNR1BP49286 362 aa4.75□□□□□ -1.65
CCDC88A-212ENST00000474059 SOX10P56693 466 aa4.75□□□□□ -1.65
CCDC88A-212ENST00000474059 CD300EQ496F6 205 aaPredicted RBP4.75□□□□□ -1.65
CCDC88A-212ENST00000474059 KIAA1614Q5VZ46 1190 aa4.75□□□□□ -1.65
CCDC88A-212ENST00000474059 SEMA6DQ8NFY4 1073 aa4.75□□□□□ -1.65
CCDC88A-212ENST00000474059 CCHCR1Q8TD31 782 aa4.75□□□□□ -1.65
CCDC88A-212ENST00000474059 IFT22Q9H7X7 185 aa4.75□□□□□ -1.65
CCDC88A-212ENST00000474059 ST3GAL5Q9UNP4 418 aa4.75□□□□□ -1.65
CCDC88A-212ENST00000474059 MAPRE3Q9UPY8 281 aa4.75□□□□□ -1.65
CCDC88A-212ENST00000474059 BTBD3Q9Y2F9 522 aa4.75□□□□□ -1.65
CCDC88A-212ENST00000474059 WNT6Q9Y6F9 365 aa4.75□□□□□ -1.65
CCDC88A-212ENST00000474059 TRIM38O00635 465 aa4.74□□□□□ -1.65
CCDC88A-212ENST00000474059 KIAA0391O15091 583 aaKnown RBP4.74□□□□□ -1.65
CCDC88A-212ENST00000474059 TEX33O43247 280 aa4.74□□□□□ -1.65
CCDC88A-212ENST00000474059 CDC45O75419 566 aa4.74□□□□□ -1.65
CCDC88A-212ENST00000474059 CHRM2P08172 466 aa4.74□□□□□ -1.65
CCDC88A-212ENST00000474059 PRR35P0CG20 571 aa4.74□□□□□ -1.65
CCDC88A-212ENST00000474059 PPP3CBP16298 524 aa4.74□□□□□ -1.65
CCDC88A-212ENST00000474059 POU3F3P20264 500 aaPredicted RBP4.74□□□□□ -1.65
CCDC88A-212ENST00000474059 PCSK6P29122 969 aa4.74□□□□□ -1.65
CCDC88A-212ENST00000474059 LLGL1Q15334 1064 aa4.74□□□□□ -1.65
CCDC88A-212ENST00000474059 ETFDHQ16134 617 aa4.74□□□□□ -1.65
CCDC88A-212ENST00000474059 FLYWCH1Q4VC44 716 aa4.74□□□□□ -1.65
CCDC88A-212ENST00000474059 RASAL3Q86YV0 1011 aa4.74□□□□□ -1.65
CCDC88A-212ENST00000474059 ADGRG5Q8IZF4 528 aa4.74□□□□□ -1.65
CCDC88A-212ENST00000474059 USP7Q93009 1102 aa4.74□□□□□ -1.65
CCDC88A-212ENST00000474059 MRPL42Q9Y6G3 142 aaKnown RBP4.74□□□□□ -1.65
CCDC88A-212ENST00000474059 ADGRA2Q96PE1 1338 aa4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms