RNA–Protein interactions for RNA: ENST00000471488.1

HDAC1-204, Transcript of histone deacetylase 1, humanhuman

TSL 5

Gene HDAC1, Length 726 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-204ENST00000471488 DEPTORQ8TB45 409 aa7.57□□□□□ -1.2
HDAC1-204ENST00000471488 AIFM3Q96NN9 605 aa7.57□□□□□ -1.2
HDAC1-204ENST00000471488 PGLYRP2Q96PD5 576 aa7.57□□□□□ -1.2
HDAC1-204ENST00000471488 LARP6Q9BRS8 491 aaKnown RBP7.57□□□□□ -1.2
HDAC1-204ENST00000471488 RNF26Q9BY78 433 aaPredicted RBP7.57□□□□□ -1.2
HDAC1-204ENST00000471488 PDZD7Q9H5P4 517 aa7.57□□□□□ -1.2
HDAC1-204ENST00000471488 BACE2Q9Y5Z0 518 aa7.57□□□□□ -1.2
HDAC1-204ENST00000471488 NOTCH4Q99466 2003 aa7.57□□□□□ -1.2
HDAC1-204ENST00000471488 PDCD11Q14690 1871 aaKnown RBP7.56□□□□□ -1.2
HDAC1-204ENST00000471488 SPEGQ15772 3267 aa7.56□□□□□ -1.2
HDAC1-204ENST00000471488 CYP3A7-CYP3A51PA0A087WV96 503 aa7.56□□□□□ -1.2
HDAC1-204ENST00000471488 ARHGEF37A1IGU5 675 aa7.56□□□□□ -1.2
HDAC1-204ENST00000471488 TMEM8BA6NDV4 472 aa7.56□□□□□ -1.2
HDAC1-204ENST00000471488 TULP1O00294 542 aaPredicted RBP7.56□□□□□ -1.2
HDAC1-204ENST00000471488 PODXLO00592 558 aa7.56□□□□□ -1.2
HDAC1-204ENST00000471488 CHADO15335 359 aa7.56□□□□□ -1.2
HDAC1-204ENST00000471488 DTNBO60941 627 aa7.56□□□□□ -1.2
HDAC1-204ENST00000471488 RHOBTB1O94844 696 aa7.56□□□□□ -1.2
HDAC1-204ENST00000471488 ATF2P15336 505 aa7.56□□□□□ -1.2
HDAC1-204ENST00000471488 CYP3A7P24462 503 aa7.56□□□□□ -1.2
HDAC1-204ENST00000471488 U2AF2P26368 475 aaKnown RBP eCLIP7.56□□□□□ -1.2
HDAC1-204ENST00000471488 MARCKSP29966 332 aaPredicted RBP7.56□□□□□ -1.2
HDAC1-204ENST00000471488 MAPK8P45983 427 aa7.56□□□□□ -1.2
HDAC1-204ENST00000471488 DGKEP52429 567 aa7.56□□□□□ -1.2
HDAC1-204ENST00000471488 IRX6P78412 446 aaPredicted RBP7.56□□□□□ -1.2
HDAC1-204ENST00000471488 GRSF1Q12849 480 aaKnown RBP eCLIP7.56□□□□□ -1.2
HDAC1-204ENST00000471488 MAPK6Q16659 721 aa7.56□□□□□ -1.2
HDAC1-204ENST00000471488 WDR44Q5JSH3 913 aa7.56□□□□□ -1.2
HDAC1-204ENST00000471488 C1orf228Q6PIY5 440 aa7.56□□□□□ -1.2
HDAC1-204ENST00000471488 BLOC1S2Q6QNY1 142 aa7.56□□□□□ -1.2
HDAC1-204ENST00000471488 RNF19BQ6ZMZ0 732 aa7.56□□□□□ -1.2
HDAC1-204ENST00000471488 MAMSTRQ6ZN01 415 aa7.56□□□□□ -1.2
HDAC1-204ENST00000471488 PIK3AP1Q6ZUJ8 805 aa7.56□□□□□ -1.2
HDAC1-204ENST00000471488 KRT25Q7Z3Z0 450 aa7.56□□□□□ -1.2
HDAC1-204ENST00000471488 NEK8Q86SG6 692 aa7.56□□□□□ -1.2
HDAC1-204ENST00000471488 RALGPS2Q86X27 583 aaPredicted RBP7.56□□□□□ -1.2
HDAC1-204ENST00000471488 ARID3BQ8IVW6 561 aaPredicted RBP7.56□□□□□ -1.2
HDAC1-204ENST00000471488 C3orf58Q8NDZ4 430 aa7.56□□□□□ -1.2
HDAC1-204ENST00000471488 SHKBP1Q8TBC3 707 aa7.56□□□□□ -1.2
HDAC1-204ENST00000471488 RSPRY1Q96DX4 576 aa7.56□□□□□ -1.2
HDAC1-204ENST00000471488 LOXL4Q96JB6 756 aa7.56□□□□□ -1.2
HDAC1-204ENST00000471488 FAM20AQ96MK3 541 aa7.56□□□□□ -1.2
HDAC1-204ENST00000471488 EIF2AK1Q9BQI3 630 aaKnown RBP7.56□□□□□ -1.2
HDAC1-204ENST00000471488 TPSD1Q9BZJ3 242 aa7.56□□□□□ -1.2
HDAC1-204ENST00000471488 SMG9Q9H0W8 520 aaKnown RBP7.56□□□□□ -1.2
HDAC1-204ENST00000471488 ATXN3LQ9H3M9 355 aa7.56□□□□□ -1.2
HDAC1-204ENST00000471488 POLD4Q9HCU8 107 aa7.56□□□□□ -1.2
HDAC1-204ENST00000471488 TMEM9BQ9NQ34 198 aa7.56□□□□□ -1.2
HDAC1-204ENST00000471488 SH3GLB2Q9NR46 395 aa7.56□□□□□ -1.2
HDAC1-204ENST00000471488 CEP72Q9P209 647 aa7.56□□□□□ -1.2
HDAC1-204ENST00000471488 FBXL5Q9UKA1 691 aa7.56□□□□□ -1.2
HDAC1-204ENST00000471488 CNOT1A5YKK6 2376 aaKnown RBP7.56□□□□□ -1.2
HDAC1-204ENST00000471488 CEP295Q9C0D2 2601 aa7.56□□□□□ -1.2
HDAC1-204ENST00000471488 VWA8A3KMH1 1905 aa7.56□□□□□ -1.2
HDAC1-204ENST00000471488 GREB1Q4ZG55 1949 aa7.56□□□□□ -1.2
HDAC1-204ENST00000471488 ANKRD11Q6UB99 2663 aaPredicted RBP7.55□□□□□ -1.2
HDAC1-204ENST00000471488 MYBPHLA2RUH7 354 aa7.55□□□□□ -1.2
HDAC1-204ENST00000471488 PATE3B3GLJ2 98 aa7.55□□□□□ -1.2
HDAC1-204ENST00000471488 KHNYNO15037 678 aaKnown RBP7.55□□□□□ -1.2
HDAC1-204ENST00000471488 ATG13O75143 517 aa7.55□□□□□ -1.2
HDAC1-204ENST00000471488 RNF40O75150 1001 aa7.55□□□□□ -1.2
HDAC1-204ENST00000471488 MOSPD3O75425 235 aa7.55□□□□□ -1.2
HDAC1-204ENST00000471488 OR4Q2P0C623 313 aa7.55□□□□□ -1.2
HDAC1-204ENST00000471488 IFNAR1P17181 557 aa7.55□□□□□ -1.2
HDAC1-204ENST00000471488 ARL2P36404 184 aa7.55□□□□□ -1.2
HDAC1-204ENST00000471488 RAP1GAPP47736 663 aa7.55□□□□□ -1.2
HDAC1-204ENST00000471488 ALDH1A3P47895 512 aa7.55□□□□□ -1.2
HDAC1-204ENST00000471488 DHPSP49366 369 aaPredicted RBP7.55□□□□□ -1.2
HDAC1-204ENST00000471488 FOSBP53539 338 aa7.55□□□□□ -1.2
HDAC1-204ENST00000471488 RCAN1P53805 252 aa7.55□□□□□ -1.2
HDAC1-204ENST00000471488 EPHB3P54753 998 aa7.55□□□□□ -1.2
HDAC1-204ENST00000471488 CYP4F8P98187 520 aa7.55□□□□□ -1.2
HDAC1-204ENST00000471488 TAF12Q16514 161 aa7.55□□□□□ -1.2
HDAC1-204ENST00000471488 UPP1Q16831 310 aa7.55□□□□□ -1.2
HDAC1-204ENST00000471488 PLK5Q496M5 336 aa7.55□□□□□ -1.2
HDAC1-204ENST00000471488 ARHGAP29Q52LW3 1261 aa7.55□□□□□ -1.2
HDAC1-204ENST00000471488 ARHGAP15Q53QZ3 475 aa7.55□□□□□ -1.2
HDAC1-204ENST00000471488 GPR158Q5T848 1215 aa7.55□□□□□ -1.2
HDAC1-204ENST00000471488 EEF1DP3Q658K8 133 aa7.55□□□□□ -1.2
HDAC1-204ENST00000471488 ZNF280DQ6N043 979 aa7.55□□□□□ -1.2
HDAC1-204ENST00000471488 RTL10Q7L3V2 364 aa7.55□□□□□ -1.2
HDAC1-204ENST00000471488 ARMCX6Q7L4S7 300 aa7.55□□□□□ -1.2
HDAC1-204ENST00000471488 TCEAL8Q8IYN2 117 aa7.55□□□□□ -1.2
HDAC1-204ENST00000471488 PIGKQ92643 395 aa7.55□□□□□ -1.2
HDAC1-204ENST00000471488 E2F7Q96AV8 911 aa7.55□□□□□ -1.2
HDAC1-204ENST00000471488 MSANTD3Q96H12 275 aa7.55□□□□□ -1.2
HDAC1-204ENST00000471488 UROC1Q96N76 676 aa7.55□□□□□ -1.2
HDAC1-204ENST00000471488 GCNAQ96QF7 691 aa7.55□□□□□ -1.2
HDAC1-204ENST00000471488 TMEM209Q96SK2 561 aa7.55□□□□□ -1.2
HDAC1-204ENST00000471488 KIFC3Q9BVG8 833 aa7.55□□□□□ -1.2
HDAC1-204ENST00000471488 DUSP15Q9H1R2 295 aaPredicted RBP7.55□□□□□ -1.2
HDAC1-204ENST00000471488 C2orf40Q9H1Z8 148 aa7.55□□□□□ -1.2
HDAC1-204ENST00000471488 SLC32A1Q9H598 525 aa7.55□□□□□ -1.2
HDAC1-204ENST00000471488 TRPV5Q9NQA5 729 aa7.55□□□□□ -1.2
HDAC1-204ENST00000471488 AVENQ9NQS1 362 aaPredicted RBP7.55□□□□□ -1.2
HDAC1-204ENST00000471488 THG1LQ9NWX6 298 aaKnown RBP7.55□□□□□ -1.2
HDAC1-204ENST00000471488 KLK13Q9UKR3 277 aa7.55□□□□□ -1.2
HDAC1-204ENST00000471488 SLC27A5Q9Y2P5 690 aa7.55□□□□□ -1.2
HDAC1-204ENST00000471488 YIPF1Q9Y548 306 aa7.55□□□□□ -1.2
HDAC1-204ENST00000471488 PCDHGA5Q9Y5G8 931 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms