RNA–Protein interactions for RNA: ENST00000470463.1

SND1-208, Transcript of staphylococcal nuclease and tudor domain containing 1, human

TSL 4

Gene SND1, Length 530 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SND1-208	ENST00000470463	SGPL1	O95470	568 aa		11.76	□□□□□ -0.53
SND1-208	ENST00000470463	LSM8	O95777	96 aa	Known RBP	11.76	□□□□□ -0.53
SND1-208	ENST00000470463	ABL1	P00519	1130 aa		11.76	□□□□□ -0.53
SND1-208	ENST00000470463	CD4	P01730	458 aa		11.76	□□□□□ -0.53
SND1-208	ENST00000470463	PNMA6A	P0CW24	399 aa	Predicted RBP	11.76	□□□□□ -0.53
SND1-208	ENST00000470463	ATF7	P17544	494 aa	Predicted RBP	11.76	□□□□□ -0.53
SND1-208	ENST00000470463	HOXA11	P31270	313 aa	Predicted RBP	11.76	□□□□□ -0.53
SND1-208	ENST00000470463	PAFAH1B1	P43034	410 aa		11.76	□□□□□ -0.53
SND1-208	ENST00000470463	WNT7B	P56706	349 aa		11.76	□□□□□ -0.53
SND1-208	ENST00000470463	MRPS6	P82932	125 aa	Known RBP	11.76	□□□□□ -0.53
SND1-208	ENST00000470463	MYO1E	Q12965	1108 aa		11.76	□□□□□ -0.53
SND1-208	ENST00000470463	NBPF20	Q3BBV1	942 aa		11.76	□□□□□ -0.53
SND1-208	ENST00000470463	SLC10A6	Q3KNW5	377 aa		11.76	□□□□□ -0.53
SND1-208	ENST00000470463	SEZ6	Q53EL9	994 aa		11.76	□□□□□ -0.53
SND1-208	ENST00000470463	ACAD10	Q6JQN1	1059 aa		11.76	□□□□□ -0.53
SND1-208	ENST00000470463	CCDC70	Q6NSX1	233 aa		11.76	□□□□□ -0.53
SND1-208	ENST00000470463	RUFY4	Q6ZNE9	571 aa		11.76	□□□□□ -0.53
SND1-208	ENST00000470463	NOP9	Q86U38	636 aa	Known RBP	11.76	□□□□□ -0.53
SND1-208	ENST00000470463	BEST2	Q8NFU1	509 aa		11.76	□□□□□ -0.53
SND1-208	ENST00000470463	KAT5	Q92993	513 aa		11.76	□□□□□ -0.53
SND1-208	ENST00000470463	LENG1	Q96BZ8	264 aa	Predicted RBP	11.76	□□□□□ -0.53
SND1-208	ENST00000470463	ZBTB10	Q96DT7	871 aa		11.76	□□□□□ -0.53
SND1-208	ENST00000470463	CPB2	Q96IY4	423 aa		11.76	□□□□□ -0.53
SND1-208	ENST00000470463	ZNF668	Q96K58	619 aa	Predicted RBP	11.76	□□□□□ -0.53
SND1-208	ENST00000470463	OSMR	Q99650	979 aa		11.76	□□□□□ -0.53
SND1-208	ENST00000470463	PI4K2A	Q9BTU6	479 aa		11.76	□□□□□ -0.53
SND1-208	ENST00000470463	CARD6	Q9BX69	1037 aa		11.76	□□□□□ -0.53
SND1-208	ENST00000470463	ZNF518B	Q9C0D4	1074 aa		11.76	□□□□□ -0.53
SND1-208	ENST00000470463	PDCL3	Q9H2J4	239 aa		11.76	□□□□□ -0.53
SND1-208	ENST00000470463	DDX20	Q9UHI6	824 aa	Known RBP	11.76	□□□□□ -0.53
SND1-208	ENST00000470463	GINS2	Q9Y248	185 aa		11.76	□□□□□ -0.53
SND1-208	ENST00000470463	CEP83	Q9Y592	693 aa		11.76	□□□□□ -0.53
SND1-208	ENST00000470463	TRPV2	Q9Y5S1	764 aa		11.76	□□□□□ -0.53
SND1-208	ENST00000470463	CAPN6	Q9Y6Q1	641 aa		11.76	□□□□□ -0.53
SND1-208	ENST00000470463	GPR182	O15218	404 aa		11.75	□□□□□ -0.53
SND1-208	ENST00000470463	FANCG	O15287	622 aa		11.75	□□□□□ -0.53
SND1-208	ENST00000470463	PALM	O75781	387 aa		11.75	□□□□□ -0.53
SND1-208	ENST00000470463	MTA2	O94776	668 aa		11.75	□□□□□ -0.53
SND1-208	ENST00000470463	PGK1	P00558	417 aa		11.75	□□□□□ -0.53
SND1-208	ENST00000470463	FTL	P02792	175 aa	Predicted RBP	11.75	□□□□□ -0.53
SND1-208	ENST00000470463	ASGR1	P07306	291 aa		11.75	□□□□□ -0.53
SND1-208	ENST00000470463	PAEP	P09466	180 aa		11.75	□□□□□ -0.53
SND1-208	ENST00000470463	ACO1	P21399	889 aa	Known RBP	11.75	□□□□□ -0.53
SND1-208	ENST00000470463	MCM3	P25205	808 aa		11.75	□□□□□ -0.53
SND1-208	ENST00000470463	GNA15	P30679	374 aa		11.75	□□□□□ -0.53
SND1-208	ENST00000470463	MYL6	P60660	151 aa		11.75	□□□□□ -0.53
SND1-208	ENST00000470463	OSTN	P61366	133 aa		11.75	□□□□□ -0.53
SND1-208	ENST00000470463	FMO1	Q01740	532 aa		11.75	□□□□□ -0.53
SND1-208	ENST00000470463	MEI1	Q5TIA1	1274 aa		11.75	□□□□□ -0.53
SND1-208	ENST00000470463	JADE1	Q6IE81	842 aa		11.75	□□□□□ -0.53
SND1-208	ENST00000470463	TMEM270	Q6UE05	265 aa		11.75	□□□□□ -0.53
SND1-208	ENST00000470463	CXCL17	Q6UXB2	119 aa		11.75	□□□□□ -0.53
SND1-208	ENST00000470463	SERINC5	Q86VE9	423 aa		11.75	□□□□□ -0.53
SND1-208	ENST00000470463	SLC47A2	Q86VL8	602 aa		11.75	□□□□□ -0.53
SND1-208	ENST00000470463	EFCAB13	Q8IY85	973 aa		11.75	□□□□□ -0.53
SND1-208	ENST00000470463	GPR161	Q8N6U8	529 aa	Known RBP	11.75	□□□□□ -0.53
SND1-208	ENST00000470463	USP38	Q8NB14	1042 aa		11.75	□□□□□ -0.53
SND1-208	ENST00000470463	RBBP8NL	Q8NC74	664 aa	Predicted RBP	11.75	□□□□□ -0.53
SND1-208	ENST00000470463	DDX1	Q92499	740 aa	Known RBP	11.75	□□□□□ -0.53
SND1-208	ENST00000470463	RABGGTA	Q92696	567 aa		11.75	□□□□□ -0.53
SND1-208	ENST00000470463	PBK	Q96KB5	322 aa		11.75	□□□□□ -0.53
SND1-208	ENST00000470463	PPP1R16B	Q96T49	567 aa		11.75	□□□□□ -0.53
SND1-208	ENST00000470463	SELENOO	Q9BVL4	669 aa		11.75	□□□□□ -0.53
SND1-208	ENST00000470463	APOBEC3G	Q9HC16	384 aa	Known RBP	11.75	□□□□□ -0.53
SND1-208	ENST00000470463	ARGLU1	Q9NWB6	273 aa	Predicted RBP	11.75	□□□□□ -0.53
SND1-208	ENST00000470463	GTF3C4	Q9UKN8	822 aa		11.75	□□□□□ -0.53
SND1-208	ENST00000470463	KIAA1257	Q9ULG3	409 aa		11.75	□□□□□ -0.53
SND1-208	ENST00000470463	UBQLN1	Q9UMX0	589 aa	Known RBP	11.75	□□□□□ -0.53
SND1-208	ENST00000470463	PIN4	Q9Y237	131 aa	Known RBP	11.75	□□□□□ -0.53
SND1-208	ENST00000470463	NUB1	Q9Y5A7	615 aa		11.75	□□□□□ -0.53
SND1-208	ENST00000470463	SQOR	Q9Y6N5	450 aa		11.75	□□□□□ -0.53
SND1-208	ENST00000470463	SCN10A	Q9Y5Y9	1956 aa		11.74	□□□□□ -0.53
SND1-208	ENST00000470463	GRID2IP	A4D2P6	1211 aa		11.74	□□□□□ -0.53
SND1-208	ENST00000470463	MIF4GD	A9UHW6	222 aa	Known RBP	11.74	□□□□□ -0.53
SND1-208	ENST00000470463	BUB1	O43683	1085 aa		11.74	□□□□□ -0.53
SND1-208	ENST00000470463	TADA3	O75528	432 aa		11.74	□□□□□ -0.53
SND1-208	ENST00000470463	NPTXR	O95502	500 aa		11.74	□□□□□ -0.53
SND1-208	ENST00000470463	CST3	P01034	146 aa	Predicted RBP	11.74	□□□□□ -0.53
SND1-208	ENST00000470463	ATP1A1	P05023	1023 aa	Known RBP	11.74	□□□□□ -0.53
SND1-208	ENST00000470463	MME	P08473	750 aa		11.74	□□□□□ -0.53
SND1-208	ENST00000470463	KRT19	P08727	400 aa		11.74	□□□□□ -0.53
SND1-208	ENST00000470463	SKI	P12755	728 aa		11.74	□□□□□ -0.53
SND1-208	ENST00000470463	CYP3A5	P20815	502 aa		11.74	□□□□□ -0.53
SND1-208	ENST00000470463	PNPLA4	P41247	253 aa		11.74	□□□□□ -0.53
SND1-208	ENST00000470463	NSF	P46459	744 aa	Known RBP	11.74	□□□□□ -0.53
SND1-208	ENST00000470463	ZNF132	P52740	706 aa		11.74	□□□□□ -0.53
SND1-208	ENST00000470463	TNNC1	P63316	161 aa		11.74	□□□□□ -0.53
SND1-208	ENST00000470463	PTK7	Q13308	1070 aa		11.74	□□□□□ -0.53
SND1-208	ENST00000470463	RPS6KA1	Q15418	735 aa		11.74	□□□□□ -0.53
SND1-208	ENST00000470463	KCNA10	Q16322	511 aa		11.74	□□□□□ -0.53
SND1-208	ENST00000470463	CLEC16A	Q2KHT3	1053 aa		11.74	□□□□□ -0.53
SND1-208	ENST00000470463	CCDC181	Q5TID7	509 aa		11.74	□□□□□ -0.53
SND1-208	ENST00000470463	LIN9	Q5TKA1	542 aa		11.74	□□□□□ -0.53
SND1-208	ENST00000470463	CCSAP	Q6IQ19	270 aa	Predicted RBP	11.74	□□□□□ -0.53
SND1-208	ENST00000470463	C11orf63	Q6NUN7	778 aa		11.74	□□□□□ -0.53
SND1-208	ENST00000470463	SLFN11	Q7Z7L1	901 aa		11.74	□□□□□ -0.53
SND1-208	ENST00000470463	DAAM2	Q86T65	1068 aa		11.74	□□□□□ -0.53
SND1-208	ENST00000470463	LRRC52	Q8N7C0	313 aa		11.74	□□□□□ -0.53
SND1-208	ENST00000470463	UBR7	Q8N806	425 aa		11.74	□□□□□ -0.53
SND1-208	ENST00000470463	CEP120	Q8N960	986 aa		11.74	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms