RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 DDX55Q8NHQ9 600 aaKnown RBP eCLIP20.35■□□□□ 0.85
VIM-203ENST00000469543 ART4Q93070 314 aa20.35■□□□□ 0.85
VIM-203ENST00000469543 SLTMQ9NWH9 1034 aaKnown RBP eCLIP20.35■□□□□ 0.85
VIM-203ENST00000469543 ASIC3Q9UHC3 531 aa20.35■□□□□ 0.85
VIM-203ENST00000469543 GMNCA6NCL1 334 aa20.34■□□□□ 0.85
VIM-203ENST00000469543 TRAPPC3O43617 180 aa20.34■□□□□ 0.85
VIM-203ENST00000469543 R3HDM1Q15032 1099 aaKnown RBP20.34■□□□□ 0.85
VIM-203ENST00000469543 RBBP8NLQ8NC74 664 aaPredicted RBP20.34■□□□□ 0.85
VIM-203ENST00000469543 CCDC114Q96M63 670 aa20.34■□□□□ 0.85
VIM-203ENST00000469543 MTMR12Q9C0I1 747 aa20.34■□□□□ 0.85
VIM-203ENST00000469543 CCDC113Q9H0I3 377 aa20.34■□□□□ 0.85
VIM-203ENST00000469543 LRRC19Q9H756 370 aa20.34■□□□□ 0.85
VIM-203ENST00000469543 SNCAIPQ9Y6H5 919 aa20.34■□□□□ 0.85
VIM-203ENST00000469543 RIPK2O43353 540 aa20.34■□□□□ 0.85
VIM-203ENST00000469543 WEE2P0C1S8 567 aa20.34■□□□□ 0.85
VIM-203ENST00000469543 KRT10P13645 584 aa20.34■□□□□ 0.85
VIM-203ENST00000469543 CREB1P16220 341 aa20.34■□□□□ 0.85
VIM-203ENST00000469543 NAMPTP43490 491 aa20.34■□□□□ 0.85
VIM-203ENST00000469543 PSMC4P43686 418 aa20.34■□□□□ 0.85
VIM-203ENST00000469543 CENPCQ03188 943 aa20.34■□□□□ 0.85
VIM-203ENST00000469543 NCOA4Q13772 614 aa20.34■□□□□ 0.85
VIM-203ENST00000469543 FAM182AQ5T1J6 154 aa20.34■□□□□ 0.85
VIM-203ENST00000469543 TLCD1Q96CP7 247 aa20.34■□□□□ 0.85
VIM-203ENST00000469543 SELENOSQ9BQE4 189 aa20.34■□□□□ 0.85
VIM-203ENST00000469543 ADAM7Q9H2U9 754 aa20.34■□□□□ 0.85
VIM-203ENST00000469543 GGPS1O95749 300 aa20.33■□□□□ 0.85
VIM-203ENST00000469543 HSPA6P17066 643 aa20.33■□□□□ 0.85
VIM-203ENST00000469543 NOMO3P69849 1222 aa20.33■□□□□ 0.85
VIM-203ENST00000469543 SPRED3Q2MJR0 410 aa20.33■□□□□ 0.85
VIM-203ENST00000469543 AGBL2Q5U5Z8 902 aa20.33■□□□□ 0.85
VIM-203ENST00000469543 APOBEC3FQ8IUX4 373 aaKnown RBP20.33■□□□□ 0.85
VIM-203ENST00000469543 ABRAQ8N0Z2 381 aa20.33■□□□□ 0.85
VIM-203ENST00000469543 MORC4Q8TE76 937 aa20.33■□□□□ 0.85
VIM-203ENST00000469543 KAT2BQ92831 832 aa20.33■□□□□ 0.85
VIM-203ENST00000469543 CD2APQ9Y5K6 639 aa20.33■□□□□ 0.85
VIM-203ENST00000469543 ADGRA2Q96PE1 1338 aa20.33■□□□□ 0.85
VIM-203ENST00000469543 IRF6O14896 467 aa20.33■□□□□ 0.84
VIM-203ENST00000469543 NUDT17P0C025 328 aa20.33■□□□□ 0.84
VIM-203ENST00000469543 KAZNQ674X7 775 aa20.33■□□□□ 0.84
VIM-203ENST00000469543 LBX2Q6XYB7 198 aa20.33■□□□□ 0.84
VIM-203ENST00000469543 GADL1Q6ZQY3 521 aa20.33■□□□□ 0.84
VIM-203ENST00000469543 ARFGAP2Q8N6H7 521 aa20.33■□□□□ 0.84
VIM-203ENST00000469543 CEP120Q8N960 986 aa20.33■□□□□ 0.84
VIM-203ENST00000469543 ZNF606Q8WXB4 792 aa20.33■□□□□ 0.84
VIM-203ENST00000469543 CTNNAL1Q9UBT7 734 aa20.33■□□□□ 0.84
VIM-203ENST00000469543 DDX20Q9UHI6 824 aaKnown RBP20.33■□□□□ 0.84
VIM-203ENST00000469543 TLR3O15455 904 aaKnown RBP20.32■□□□□ 0.84
VIM-203ENST00000469543 CHN1P15882 459 aa20.32■□□□□ 0.84
VIM-203ENST00000469543 IVDP26440 423 aa20.32■□□□□ 0.84
VIM-203ENST00000469543 MYL6P60660 151 aa20.32■□□□□ 0.84
VIM-203ENST00000469543 RNF187Q5TA31 235 aaPredicted RBP20.32■□□□□ 0.84
VIM-203ENST00000469543 TXNRD3NBQ6F5E7 133 aa20.32■□□□□ 0.84
VIM-203ENST00000469543 SCARA5Q6ZMJ2 495 aa20.32■□□□□ 0.84
VIM-203ENST00000469543 ENOSF1Q7L5Y1 443 aa20.32■□□□□ 0.84
VIM-203ENST00000469543 TADA2BQ86TJ2 420 aa20.32■□□□□ 0.84
VIM-203ENST00000469543 CLMNQ96JQ2 1002 aa20.32■□□□□ 0.84
VIM-203ENST00000469543 PPP1R16BQ96T49 567 aa20.32■□□□□ 0.84
VIM-203ENST00000469543 PASKQ96RG2 1323 aa20.32■□□□□ 0.84
VIM-203ENST00000469543 ADM5C9JUS6 153 aa20.32■□□□□ 0.84
VIM-203ENST00000469543 ZC3H11AO75152 810 aaKnown RBP eCLIP20.32■□□□□ 0.84
VIM-203ENST00000469543 CLTAP09496 248 aa20.32■□□□□ 0.84
VIM-203ENST00000469543 ORC1Q13415 861 aa20.32■□□□□ 0.84
VIM-203ENST00000469543 FBXW10Q5XX13 1052 aa20.32■□□□□ 0.84
VIM-203ENST00000469543 GLIS1Q8NBF1 620 aa20.32■□□□□ 0.84
VIM-203ENST00000469543 CDC42EP4Q9H3Q1 356 aaKnown RBP20.32■□□□□ 0.84
VIM-203ENST00000469543 MTRF1LQ9UGC7 380 aaKnown RBP20.32■□□□□ 0.84
VIM-203ENST00000469543 A6NNZ2 444 aa20.31■□□□□ 0.84
VIM-203ENST00000469543 DDNO94850 711 aaPredicted RBP20.31■□□□□ 0.84
VIM-203ENST00000469543 BRD2P25440 801 aaKnown RBP20.31■□□□□ 0.84
VIM-203ENST00000469543 ADCY1Q08828 1119 aa20.31■□□□□ 0.84
VIM-203ENST00000469543 TARBP2Q15633 366 aaKnown RBP20.31■□□□□ 0.84
VIM-203ENST00000469543 KYNUQ16719 465 aa20.31■□□□□ 0.84
VIM-203ENST00000469543 TUBB8Q3ZCM7 444 aa20.31■□□□□ 0.84
VIM-203ENST00000469543 ZFYVE27Q5T4F4 411 aa20.31■□□□□ 0.84
VIM-203ENST00000469543 RNF149Q8NC42 400 aa20.31■□□□□ 0.84
VIM-203ENST00000469543 COPS5Q92905 334 aa20.31■□□□□ 0.84
VIM-203ENST00000469543 KIAA1586Q9HCI6 787 aa20.31■□□□□ 0.84
VIM-203ENST00000469543 IGKV6D-21A0A0A0MT36 114 aa20.31■□□□□ 0.84
VIM-203ENST00000469543 RGS16O15492 202 aaPredicted RBP20.31■□□□□ 0.84
VIM-203ENST00000469543 ITGBL1O95965 494 aaPredicted RBP20.31■□□□□ 0.84
VIM-203ENST00000469543 ITGA8P53708 1063 aa20.31■□□□□ 0.84
VIM-203ENST00000469543 CALCOCO2Q13137 446 aa20.31■□□□□ 0.84
VIM-203ENST00000469543 CLUL1Q15846 466 aa20.31■□□□□ 0.84
VIM-203ENST00000469543 EFCAB13Q8IY85 973 aa20.31■□□□□ 0.84
VIM-203ENST00000469543 THNSL1Q8IYQ7 743 aa20.31■□□□□ 0.84
VIM-203ENST00000469543 OTUD5Q96G74 571 aa20.31■□□□□ 0.84
VIM-203ENST00000469543 NIFKQ9BYG3 293 aaKnown RBP20.31■□□□□ 0.84
VIM-203ENST00000469543 TXNRD2Q9NNW7 524 aa20.31■□□□□ 0.84
VIM-203ENST00000469543 F8VP50 259 aa20.3■□□□□ 0.84
VIM-203ENST00000469543 B4GALT5O43286 388 aa20.3■□□□□ 0.84
VIM-203ENST00000469543 ADCY3O60266 1144 aa20.3■□□□□ 0.84
VIM-203ENST00000469543 MSCO60682 206 aa20.3■□□□□ 0.84
VIM-203ENST00000469543 PROSCO94903 275 aa20.3■□□□□ 0.84
VIM-203ENST00000469543 IFNAR2P48551 515 aa20.3■□□□□ 0.84
VIM-203ENST00000469543 EIF3BP55884 814 aaKnown RBP20.3■□□□□ 0.84
VIM-203ENST00000469543 PTP4A2Q12974 167 aa20.3■□□□□ 0.84
VIM-203ENST00000469543 Q3C1V9 767 aa20.3■□□□□ 0.84
VIM-203ENST00000469543 HP1BP3Q5SSJ5 553 aaPredicted RBP20.3■□□□□ 0.84
VIM-203ENST00000469543 DNERQ8NFT8 737 aa20.3■□□□□ 0.84
VIM-203ENST00000469543 MLXIPLQ9NP71 852 aa20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms