RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 PCDHB8Q9UN66 801 aa18.06■□□□□ 0.48
CCDC28B-204ENST00000469003 VPS13AQ96RL7 3174 aa18.05■□□□□ 0.48
CCDC28B-204ENST00000469003 PRRG1O14668 218 aa18.05■□□□□ 0.48
CCDC28B-204ENST00000469003 HNRNPDLO14979 420 aaKnown RBP18.05■□□□□ 0.48
CCDC28B-204ENST00000469003 OGTO15294 1046 aa18.05■□□□□ 0.48
CCDC28B-204ENST00000469003 TRAK2O60296 914 aa18.05■□□□□ 0.48
CCDC28B-204ENST00000469003 LRG1P02750 347 aa18.05■□□□□ 0.48
CCDC28B-204ENST00000469003 KRT18P05783 430 aaKnown RBP18.05■□□□□ 0.48
CCDC28B-204ENST00000469003 RHOP08100 348 aa18.05■□□□□ 0.48
CCDC28B-204ENST00000469003 CYP3A5P20815 502 aa18.05■□□□□ 0.48
CCDC28B-204ENST00000469003 PDCP20941 246 aa18.05■□□□□ 0.48
CCDC28B-204ENST00000469003 NBL1P41271 181 aa18.05■□□□□ 0.48
CCDC28B-204ENST00000469003 TNFSF9P41273 254 aa18.05■□□□□ 0.48
CCDC28B-204ENST00000469003 ARPP19P56211 112 aa18.05■□□□□ 0.48
CCDC28B-204ENST00000469003 PPP2R3AQ06190 1150 aa18.05■□□□□ 0.48
CCDC28B-204ENST00000469003 ZBTB6Q15916 424 aa18.05■□□□□ 0.48
CCDC28B-204ENST00000469003 TPGS2Q68CL5 300 aa18.05■□□□□ 0.48
CCDC28B-204ENST00000469003 ZNF280DQ6N043 979 aa18.05■□□□□ 0.48
CCDC28B-204ENST00000469003 PHLDB3Q6NSJ2 640 aa18.05■□□□□ 0.48
CCDC28B-204ENST00000469003 NPAS3Q8IXF0 933 aa18.05■□□□□ 0.48
CCDC28B-204ENST00000469003 LARP4BQ92615 738 aaKnown RBP18.05■□□□□ 0.48
CCDC28B-204ENST00000469003 KIF12Q96FN5 646 aa18.05■□□□□ 0.48
CCDC28B-204ENST00000469003 UBQLN1Q9UMX0 589 aaKnown RBP18.05■□□□□ 0.48
CCDC28B-204ENST00000469003 MRPS23Q9Y3D9 190 aaKnown RBP18.05■□□□□ 0.48
CCDC28B-204ENST00000469003 LACTBL1A8MY62 500 aa18.04■□□□□ 0.48
CCDC28B-204ENST00000469003 XPOTO43592 962 aaKnown RBP18.04■□□□□ 0.48
CCDC28B-204ENST00000469003 FAM189A1O60320 539 aa18.04■□□□□ 0.48
CCDC28B-204ENST00000469003 TBCAO75347 108 aaKnown RBP18.04■□□□□ 0.48
CCDC28B-204ENST00000469003 PTPN2P17706 415 aa18.04■□□□□ 0.48
CCDC28B-204ENST00000469003 ABCD1P33897 745 aa18.04■□□□□ 0.48
CCDC28B-204ENST00000469003 GPC5P78333 572 aa18.04■□□□□ 0.48
CCDC28B-204ENST00000469003 SPAG1Q07617 926 aa18.04■□□□□ 0.48
CCDC28B-204ENST00000469003 ASCL5Q7RTU5 278 aa18.04■□□□□ 0.48
CCDC28B-204ENST00000469003 TSPAN18Q96SJ8 248 aa18.04■□□□□ 0.48
CCDC28B-204ENST00000469003 FIZ1Q96SL8 496 aa18.04■□□□□ 0.48
CCDC28B-204ENST00000469003 CYP4F11Q9HBI6 524 aa18.04■□□□□ 0.48
CCDC28B-204ENST00000469003 MAFFQ9ULX9 164 aa18.04■□□□□ 0.48
CCDC28B-204ENST00000469003 GVINP1Q7Z2Y8 2422 aa18.03■□□□□ 0.48
CCDC28B-204ENST00000469003 A0A0B4J269 797 aa18.03■□□□□ 0.48
CCDC28B-204ENST00000469003 M0QZQ0 153 aa18.03■□□□□ 0.48
CCDC28B-204ENST00000469003 SEC24AO95486 1093 aa18.03■□□□□ 0.48
CCDC28B-204ENST00000469003 ADRB2P07550 413 aa18.03■□□□□ 0.48
CCDC28B-204ENST00000469003 MARCKSP29966 332 aaPredicted RBP18.03■□□□□ 0.48
CCDC28B-204ENST00000469003 DDIT3P35638 169 aa18.03■□□□□ 0.48
CCDC28B-204ENST00000469003 GTF2BQ00403 316 aa18.03■□□□□ 0.48
CCDC28B-204ENST00000469003 PTPAQ15257 358 aa18.03■□□□□ 0.48
CCDC28B-204ENST00000469003 ENOX2Q16206 610 aaKnown RBP18.03■□□□□ 0.48
CCDC28B-204ENST00000469003 SLC5A9Q2M3M2 681 aa18.03■□□□□ 0.48
CCDC28B-204ENST00000469003 ZBTB41Q5SVQ8 909 aa18.03■□□□□ 0.48
CCDC28B-204ENST00000469003 MAP4K3Q8IVH8 894 aa18.03■□□□□ 0.48
CCDC28B-204ENST00000469003 TMEM130Q8N3G9 435 aa18.03■□□□□ 0.48
CCDC28B-204ENST00000469003 ING5Q8WYH8 240 aa18.03■□□□□ 0.48
CCDC28B-204ENST00000469003 ZHX3Q9H4I2 956 aa18.03■□□□□ 0.48
CCDC28B-204ENST00000469003 RPF1Q9H9Y2 349 aaKnown RBP18.03■□□□□ 0.48
CCDC28B-204ENST00000469003 GDE1Q9NZC3 331 aa18.03■□□□□ 0.48
CCDC28B-204ENST00000469003 AFF4Q9UHB7 1163 aaKnown RBP18.03■□□□□ 0.48
CCDC28B-204ENST00000469003 INSL5Q9Y5Q6 135 aa18.03■□□□□ 0.48
CCDC28B-204ENST00000469003 CLIC4Q9Y696 253 aa18.03■□□□□ 0.48
CCDC28B-204ENST00000469003 WDR87Q6ZQQ6 2873 aa18.02■□□□□ 0.48
CCDC28B-204ENST00000469003 PRR23AA6NEV1 266 aa18.02■□□□□ 0.48
CCDC28B-204ENST00000469003 NMT1P30419 496 aaKnown RBP18.02■□□□□ 0.48
CCDC28B-204ENST00000469003 AARSP49588 968 aaKnown RBP eCLIP18.02■□□□□ 0.48
CCDC28B-204ENST00000469003 STARD6P59095 220 aa18.02■□□□□ 0.48
CCDC28B-204ENST00000469003 ANGPT1Q15389 498 aa18.02■□□□□ 0.48
CCDC28B-204ENST00000469003 PRSS36Q5K4E3 855 aa18.02■□□□□ 0.48
CCDC28B-204ENST00000469003 SLC39A4Q6P5W5 647 aa18.02■□□□□ 0.48
CCDC28B-204ENST00000469003 CD302Q8IX05 232 aa18.02■□□□□ 0.48
CCDC28B-204ENST00000469003 SHDQ96IW2 340 aa18.02■□□□□ 0.48
CCDC28B-204ENST00000469003 EPSTI1Q96J88 318 aa18.02■□□□□ 0.48
CCDC28B-204ENST00000469003 KXD1Q9BQD3 176 aa18.02■□□□□ 0.48
CCDC28B-204ENST00000469003 MSTO1Q9BUK6 570 aa18.02■□□□□ 0.48
CCDC28B-204ENST00000469003 OXCT2Q9BYC2 517 aaPredicted RBP18.02■□□□□ 0.48
CCDC28B-204ENST00000469003 OAZ2O95190 189 aa18.01■□□□□ 0.47
CCDC28B-204ENST00000469003 CPB1P15086 417 aa18.01■□□□□ 0.47
CCDC28B-204ENST00000469003 YWHAHQ04917 246 aaPredicted RBP18.01■□□□□ 0.47
CCDC28B-204ENST00000469003 ADCY1Q08828 1119 aa18.01■□□□□ 0.47
CCDC28B-204ENST00000469003 RESTQ13127 1097 aa18.01■□□□□ 0.47
CCDC28B-204ENST00000469003 SPECC1Q5M775 1068 aa18.01■□□□□ 0.47
CCDC28B-204ENST00000469003 USP49Q70CQ1 688 aa18.01■□□□□ 0.47
CCDC28B-204ENST00000469003 ERMP1Q7Z2K6 904 aa18.01■□□□□ 0.47
CCDC28B-204ENST00000469003 ELMOD1Q8N336 334 aa18.01■□□□□ 0.47
CCDC28B-204ENST00000469003 KRI1Q8N9T8 703 aaKnown RBP18.01■□□□□ 0.47
CCDC28B-204ENST00000469003 MCRS1Q96EZ8 462 aa18.01■□□□□ 0.47
CCDC28B-204ENST00000469003 CORO1BQ9BR76 489 aa18.01■□□□□ 0.47
CCDC28B-204ENST00000469003 ST6GALNAC4Q9H4F1 302 aa18.01■□□□□ 0.47
CCDC28B-204ENST00000469003 STK17AQ9UEE5 414 aa18.01■□□□□ 0.47
CCDC28B-204ENST00000469003 CCDC39Q9UFE4 941 aa18.01■□□□□ 0.47
CCDC28B-204ENST00000469003 FBXO2Q9UK22 296 aaPredicted RBP18.01■□□□□ 0.47
CCDC28B-204ENST00000469003 CPSF3Q9UKF6 684 aaKnown RBP18.01■□□□□ 0.47
CCDC28B-204ENST00000469003 SIT1Q9Y3P8 196 aa18.01■□□□□ 0.47
CCDC28B-204ENST00000469003 SRPRBQ9Y5M8 271 aaKnown RBP18.01■□□□□ 0.47
CCDC28B-204ENST00000469003 ZNF197O14709 1029 aa18■□□□□ 0.47
CCDC28B-204ENST00000469003 ECI2O75521 394 aa18■□□□□ 0.47
CCDC28B-204ENST00000469003 MICAL2O94851 1124 aa18■□□□□ 0.47
CCDC28B-204ENST00000469003 CEBPBP17676 345 aa18■□□□□ 0.47
CCDC28B-204ENST00000469003 SYT1P21579 422 aa18■□□□□ 0.47
CCDC28B-204ENST00000469003 GUCY2FP51841 1108 aa18■□□□□ 0.47
CCDC28B-204ENST00000469003 PFKPQ01813 784 aa18■□□□□ 0.47
CCDC28B-204ENST00000469003 SPATA1Q5VX52 437 aa18■□□□□ 0.47
CCDC28B-204ENST00000469003 RNF19BQ6ZMZ0 732 aa18■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms