RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 AARSP49588 968 aaKnown RBP eCLIP16.38■□□□□ 0.21
NPHP4-205ENST00000466897 FXR1P51114 621 aaKnown RBP eCLIP16.38■□□□□ 0.21
NPHP4-205ENST00000466897 RBP5P82980 135 aa16.38■□□□□ 0.21
NPHP4-205ENST00000466897 CBWD6Q4V339 395 aa16.38■□□□□ 0.21
NPHP4-205ENST00000466897 VWA3BQ502W6 1294 aa16.38■□□□□ 0.21
NPHP4-205ENST00000466897 HSP90AA4PQ58FG1 418 aa16.38■□□□□ 0.21
NPHP4-205ENST00000466897 CBWD3Q5JTY5 395 aa16.38■□□□□ 0.21
NPHP4-205ENST00000466897 CBWD5Q5RIA9 395 aa16.38■□□□□ 0.21
NPHP4-205ENST00000466897 APTXQ7Z2E3 356 aaKnown RBP16.38■□□□□ 0.21
NPHP4-205ENST00000466897 SLC39A11Q8N1S5 342 aa16.38■□□□□ 0.21
NPHP4-205ENST00000466897 COLEC11Q9BWP8 271 aa16.38■□□□□ 0.21
NPHP4-205ENST00000466897 NDST4Q9H3R1 872 aa16.38■□□□□ 0.21
NPHP4-205ENST00000466897 FAN1Q9Y2M0 1017 aa16.38■□□□□ 0.21
NPHP4-205ENST00000466897 PCDHB12Q9Y5F1 795 aa16.38■□□□□ 0.21
NPHP4-205ENST00000466897 EFEMP2O95967 443 aa16.37■□□□□ 0.21
NPHP4-205ENST00000466897 ATP1A3P13637 1013 aa16.37■□□□□ 0.21
NPHP4-205ENST00000466897 CDK11BP21127 795 aaKnown RBP16.37■□□□□ 0.21
NPHP4-205ENST00000466897 POLR2BP30876 1174 aaKnown RBP16.37■□□□□ 0.21
NPHP4-205ENST00000466897 BMPR1AP36894 532 aa16.37■□□□□ 0.21
NPHP4-205ENST00000466897 PBX2P40425 430 aa16.37■□□□□ 0.21
NPHP4-205ENST00000466897 OR1G1P47890 313 aa16.37■□□□□ 0.21
NPHP4-205ENST00000466897 GUCY2FP51841 1108 aa16.37■□□□□ 0.21
NPHP4-205ENST00000466897 ERVK-21P61565 698 aa16.37■□□□□ 0.21
NPHP4-205ENST00000466897 MYL7Q01449 175 aa16.37■□□□□ 0.21
NPHP4-205ENST00000466897 TAP1Q03518 808 aa16.37■□□□□ 0.21
NPHP4-205ENST00000466897 CETN1Q12798 172 aa16.37■□□□□ 0.21
NPHP4-205ENST00000466897 BIRC3Q13489 604 aa16.37■□□□□ 0.21
NPHP4-205ENST00000466897 SPOUT1Q5T280 376 aaKnown RBP16.37■□□□□ 0.21
NPHP4-205ENST00000466897 GAS2L3Q86XJ1 694 aa16.37■□□□□ 0.21
NPHP4-205ENST00000466897 FBXL13Q8NEE6 735 aa16.37■□□□□ 0.21
NPHP4-205ENST00000466897 TAF4BQ92750 862 aa16.37■□□□□ 0.21
NPHP4-205ENST00000466897 IGSF21Q96ID5 467 aa16.37■□□□□ 0.21
NPHP4-205ENST00000466897 FAXDC2Q96IV6 333 aa16.37■□□□□ 0.21
NPHP4-205ENST00000466897 TGS1Q96RS0 853 aaKnown RBP16.37■□□□□ 0.21
NPHP4-205ENST00000466897 PAAF1Q9BRP4 392 aa16.37■□□□□ 0.21
NPHP4-205ENST00000466897 MARCH5Q9NX47 278 aa16.37■□□□□ 0.21
NPHP4-205ENST00000466897 SPG21Q9NZD8 308 aa16.37■□□□□ 0.21
NPHP4-205ENST00000466897 ADAM28Q9UKQ2 775 aa16.37■□□□□ 0.21
NPHP4-205ENST00000466897 ATG2AQ2TAZ0 1938 aa16.37■□□□□ 0.21
NPHP4-205ENST00000466897 PHACTR2O75167 634 aa16.36■□□□□ 0.21
NPHP4-205ENST00000466897 B3GAT3O94766 335 aa16.36■□□□□ 0.21
NPHP4-205ENST00000466897 KIF4AO95239 1232 aa16.36■□□□□ 0.21
NPHP4-205ENST00000466897 VNN1O95497 513 aa16.36■□□□□ 0.21
NPHP4-205ENST00000466897 TAF6P49848 677 aa16.36■□□□□ 0.21
NPHP4-205ENST00000466897 PLCB3Q01970 1234 aa16.36■□□□□ 0.21
NPHP4-205ENST00000466897 ELAVL2Q12926 359 aaKnown RBP16.36■□□□□ 0.21
NPHP4-205ENST00000466897 MYO1EQ12965 1108 aa16.36■□□□□ 0.21
NPHP4-205ENST00000466897 TRPC3Q13507 836 aa16.36■□□□□ 0.21
NPHP4-205ENST00000466897 NCOA4Q13772 614 aa16.36■□□□□ 0.21
NPHP4-205ENST00000466897 SV2CQ496J9 727 aa16.36■□□□□ 0.21
NPHP4-205ENST00000466897 EPC2Q52LR7 807 aa16.36■□□□□ 0.21
NPHP4-205ENST00000466897 CD300LGQ6UXG3 332 aa16.36■□□□□ 0.21
NPHP4-205ENST00000466897 CREBRFQ8IUR6 639 aa16.36■□□□□ 0.21
NPHP4-205ENST00000466897 RNF168Q8IYW5 571 aaPredicted RBP16.36■□□□□ 0.21
NPHP4-205ENST00000466897 C3orf58Q8NDZ4 430 aa16.36■□□□□ 0.21
NPHP4-205ENST00000466897 TIFAQ96CG3 184 aa16.36■□□□□ 0.21
NPHP4-205ENST00000466897 XYLT2Q9H1B5 865 aa16.36■□□□□ 0.21
NPHP4-205ENST00000466897 SLC28A3Q9HAS3 691 aa16.36■□□□□ 0.21
NPHP4-205ENST00000466897 AGAP1Q9UPQ3 857 aa16.36■□□□□ 0.21
NPHP4-205ENST00000466897 R3HCC1Q9Y3T6 440 aaKnown RBP16.36■□□□□ 0.21
NPHP4-205ENST00000466897 CHD9Q3L8U1 2897 aa16.35■□□□□ 0.21
NPHP4-205ENST00000466897 LGALS16A8MUM7 142 aa16.35■□□□□ 0.21
NPHP4-205ENST00000466897 TRAPPC3O43617 180 aa16.35■□□□□ 0.21
NPHP4-205ENST00000466897 ARHGEF15O94989 841 aa16.35■□□□□ 0.21
NPHP4-205ENST00000466897 ASS1P00966 412 aaKnown RBP16.35■□□□□ 0.21
NPHP4-205ENST00000466897 CST3P01034 146 aaPredicted RBP16.35■□□□□ 0.21
NPHP4-205ENST00000466897 HLA-DRAP01903 254 aa16.35■□□□□ 0.21
NPHP4-205ENST00000466897 KRT19P08727 400 aa16.35■□□□□ 0.21
NPHP4-205ENST00000466897 CTNNB1P35222 781 aa16.35■□□□□ 0.21
NPHP4-205ENST00000466897 PIK3CAP42336 1068 aa16.35■□□□□ 0.21
NPHP4-205ENST00000466897 COPB1P53618 953 aaKnown RBP16.35■□□□□ 0.21
NPHP4-205ENST00000466897 LILRA4P59901 499 aa16.35■□□□□ 0.21
NPHP4-205ENST00000466897 SGSM1Q2NKQ1 1148 aa16.35■□□□□ 0.21
NPHP4-205ENST00000466897 PPP2R2DQ66LE6 453 aa16.35■□□□□ 0.21
NPHP4-205ENST00000466897 RNF214Q8ND24 703 aa16.35■□□□□ 0.21
NPHP4-205ENST00000466897 TAS1R2Q8TE23 839 aa16.35■□□□□ 0.21
NPHP4-205ENST00000466897 FAM84AQ96KN4 292 aa16.35■□□□□ 0.21
NPHP4-205ENST00000466897 C11orf84Q9BUA3 381 aaPredicted RBP16.35■□□□□ 0.21
NPHP4-205ENST00000466897 IMPG2Q9BZV3 1241 aa16.35■□□□□ 0.21
NPHP4-205ENST00000466897 RBSNQ9H1K0 784 aa16.35■□□□□ 0.21
NPHP4-205ENST00000466897 NKX2-4Q9H2Z4 354 aa16.35■□□□□ 0.21
NPHP4-205ENST00000466897 RAB20Q9NX57 234 aa16.35■□□□□ 0.21
NPHP4-205ENST00000466897 GDAP2Q9NXN4 497 aa16.35■□□□□ 0.21
NPHP4-205ENST00000466897 TAB2Q9NYJ8 693 aa16.35■□□□□ 0.21
NPHP4-205ENST00000466897 CACNG4Q9UBN1 327 aa16.35■□□□□ 0.21
NPHP4-205ENST00000466897 LZTS1Q9Y250 596 aa16.35■□□□□ 0.21
NPHP4-205ENST00000466897 PRG3Q9Y2Y8 225 aaPredicted RBP16.35■□□□□ 0.21
NPHP4-205ENST00000466897 SF3B1O75533 1304 aaKnown RBP eCLIP16.35■□□□□ 0.21
NPHP4-205ENST00000466897 ARHGEF37A1IGU5 675 aa16.34■□□□□ 0.21
NPHP4-205ENST00000466897 KPNA7A9QM74 516 aa16.34■□□□□ 0.21
NPHP4-205ENST00000466897 M0QZQ0 153 aa16.34■□□□□ 0.21
NPHP4-205ENST00000466897 TULP1O00294 542 aaPredicted RBP16.34■□□□□ 0.21
NPHP4-205ENST00000466897 PPEF2O14830 753 aa16.34■□□□□ 0.21
NPHP4-205ENST00000466897 UBE3AQ05086 875 aa16.34■□□□□ 0.21
NPHP4-205ENST00000466897 SMYD5Q6GMV2 418 aa16.34■□□□□ 0.21
NPHP4-205ENST00000466897 TMEM173Q86WV6 379 aaPredicted RBP16.34■□□□□ 0.21
NPHP4-205ENST00000466897 LMO3Q8TAP4 145 aa16.34■□□□□ 0.21
NPHP4-205ENST00000466897 TMEM169Q96HH4 297 aa16.34■□□□□ 0.21
NPHP4-205ENST00000466897 HPDLQ96IR7 371 aa16.34■□□□□ 0.21
NPHP4-205ENST00000466897 SUSD3Q96L08 255 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms