RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 TARBP2Q15633 366 aaKnown RBP9.53□□□□□ -0.88
SYNE1-217ENST00000466159 SH3D19Q5HYK7 790 aa9.53□□□□□ -0.88
SYNE1-217ENST00000466159 CHADLQ6NUI6 762 aa9.53□□□□□ -0.88
SYNE1-217ENST00000466159 MMS22LQ6ZRQ5 1243 aa9.53□□□□□ -0.88
SYNE1-217ENST00000466159 ZBTB33Q86T24 672 aa9.53□□□□□ -0.88
SYNE1-217ENST00000466159 TADA2BQ86TJ2 420 aa9.53□□□□□ -0.88
SYNE1-217ENST00000466159 RBBP8NLQ8NC74 664 aaPredicted RBP9.53□□□□□ -0.88
SYNE1-217ENST00000466159 EPS8L3Q8TE67 593 aaKnown RBP9.53□□□□□ -0.88
SYNE1-217ENST00000466159 IPO4Q8TEX9 1081 aaKnown RBP9.53□□□□□ -0.88
SYNE1-217ENST00000466159 TRIM11Q96F44 468 aa9.53□□□□□ -0.88
SYNE1-217ENST00000466159 CGRRF1Q99675 332 aa9.53□□□□□ -0.88
SYNE1-217ENST00000466159 FAM118BQ9BPY3 351 aa9.53□□□□□ -0.88
SYNE1-217ENST00000466159 MTFR1LQ9H019 292 aa9.53□□□□□ -0.88
SYNE1-217ENST00000466159 AZI2Q9H6S1 392 aa9.53□□□□□ -0.88
SYNE1-217ENST00000466159 R3HDM2Q9Y2K5 976 aaKnown RBP9.53□□□□□ -0.88
SYNE1-217ENST00000466159 SNCAIPQ9Y6H5 919 aa9.53□□□□□ -0.88
SYNE1-217ENST00000466159 SRRM3A6NNA2 597 aaPredicted RBP9.52□□□□□ -0.88
SYNE1-217ENST00000466159 THAP12O43422 761 aa9.52□□□□□ -0.88
SYNE1-217ENST00000466159 PROSCO94903 275 aa9.52□□□□□ -0.88
SYNE1-217ENST00000466159 RALAP11233 206 aa9.52□□□□□ -0.88
SYNE1-217ENST00000466159 RARGP13631 454 aa9.52□□□□□ -0.88
SYNE1-217ENST00000466159 NF2P35240 595 aa9.52□□□□□ -0.88
SYNE1-217ENST00000466159 TCF7P36402 384 aaPredicted RBP9.52□□□□□ -0.88
SYNE1-217ENST00000466159 SLC20A2Q08357 652 aa9.52□□□□□ -0.88
SYNE1-217ENST00000466159 CALCOCO2Q13137 446 aa9.52□□□□□ -0.88
SYNE1-217ENST00000466159 NCOA4Q13772 614 aa9.52□□□□□ -0.88
SYNE1-217ENST00000466159 SLMAPQ14BN4 828 aa9.52□□□□□ -0.88
SYNE1-217ENST00000466159 QPCTQ16769 361 aa9.52□□□□□ -0.88
SYNE1-217ENST00000466159 LY6KQ17RY6 165 aa9.52□□□□□ -0.88
SYNE1-217ENST00000466159 NCAPG2Q86XI2 1143 aa9.52□□□□□ -0.88
SYNE1-217ENST00000466159 CCDC50Q8IVM0 306 aa9.52□□□□□ -0.88
SYNE1-217ENST00000466159 PRPF31Q8WWY3 499 aaKnown RBP9.52□□□□□ -0.88
SYNE1-217ENST00000466159 PPM1EQ8WY54 764 aa9.52□□□□□ -0.88
SYNE1-217ENST00000466159 KCNN1Q92952 543 aa9.52□□□□□ -0.88
SYNE1-217ENST00000466159 PGM2Q96G03 612 aa9.52□□□□□ -0.88
SYNE1-217ENST00000466159 NRBP2Q9NSY0 501 aa9.52□□□□□ -0.88
SYNE1-217ENST00000466159 ASIC3Q9UHC3 531 aa9.52□□□□□ -0.88
SYNE1-217ENST00000466159 USTQ9Y2C2 406 aa9.52□□□□□ -0.88
SYNE1-217ENST00000466159 SBDSQ9Y3A5 250 aaKnown RBP eCLIP9.52□□□□□ -0.88
SYNE1-217ENST00000466159 LOC285556D6RIA3 1793 aa9.52□□□□□ -0.88
SYNE1-217ENST00000466159 VGLL3A8MV65 326 aa9.52□□□□□ -0.89
SYNE1-217ENST00000466159 RGS16O15492 202 aaPredicted RBP9.52□□□□□ -0.89
SYNE1-217ENST00000466159 ADCY3O60266 1144 aa9.52□□□□□ -0.89
SYNE1-217ENST00000466159 MARK3P27448 753 aa9.52□□□□□ -0.89
SYNE1-217ENST00000466159 GJC1P36383 396 aa9.52□□□□□ -0.89
SYNE1-217ENST00000466159 LIN9Q5TKA1 542 aa9.52□□□□□ -0.89
SYNE1-217ENST00000466159 ANKS1BQ7Z6G8 1248 aa9.52□□□□□ -0.89
SYNE1-217ENST00000466159 PACS2Q86VP3 889 aa9.52□□□□□ -0.89
SYNE1-217ENST00000466159 MICALL1Q8N3F8 863 aa9.52□□□□□ -0.89
SYNE1-217ENST00000466159 SLCO2A1Q92959 643 aa9.52□□□□□ -0.89
SYNE1-217ENST00000466159 FAM212AQ96EL1 285 aa9.52□□□□□ -0.89
SYNE1-217ENST00000466159 TCHPQ9BT92 498 aa9.52□□□□□ -0.89
SYNE1-217ENST00000466159 DDX23Q9BUQ8 820 aaKnown RBP9.52□□□□□ -0.89
SYNE1-217ENST00000466159 DCLK3Q9C098 648 aa9.52□□□□□ -0.89
SYNE1-217ENST00000466159 TMEM134Q9H6X4 195 aa9.52□□□□□ -0.89
SYNE1-217ENST00000466159 AAASQ9NRG9 546 aa9.52□□□□□ -0.89
SYNE1-217ENST00000466159 PTPRFP10586 1907 aa9.52□□□□□ -0.89
SYNE1-217ENST00000466159 MEFVO15553 781 aaPredicted RBP9.52□□□□□ -0.89
SYNE1-217ENST00000466159 PAEPP09466 180 aa9.52□□□□□ -0.89
SYNE1-217ENST00000466159 SRGAP2CP0DJJ0 459 aa9.52□□□□□ -0.89
SYNE1-217ENST00000466159 TBXAS1P24557 533 aaPredicted RBP9.52□□□□□ -0.89
SYNE1-217ENST00000466159 IVDP26440 423 aa9.52□□□□□ -0.89
SYNE1-217ENST00000466159 CHKAP35790 457 aa9.52□□□□□ -0.89
SYNE1-217ENST00000466159 RFC5P40937 340 aa9.52□□□□□ -0.89
SYNE1-217ENST00000466159 SSR1P43307 286 aaKnown RBP9.52□□□□□ -0.89
SYNE1-217ENST00000466159 VPS41P49754 854 aa9.52□□□□□ -0.89
SYNE1-217ENST00000466159 PTP4A2Q12974 167 aa9.52□□□□□ -0.89
SYNE1-217ENST00000466159 TRIM50Q86XT4 487 aa9.52□□□□□ -0.89
SYNE1-217ENST00000466159 RIOX2Q8IUF8 465 aa9.52□□□□□ -0.89
SYNE1-217ENST00000466159 ZNF606Q8WXB4 792 aa9.52□□□□□ -0.89
SYNE1-217ENST00000466159 CCDC114Q96M63 670 aa9.52□□□□□ -0.89
SYNE1-217ENST00000466159 SELENOSQ9BQE4 189 aa9.52□□□□□ -0.89
SYNE1-217ENST00000466159 PAGR1Q9BTK6 254 aa9.52□□□□□ -0.89
SYNE1-217ENST00000466159 ADAM7Q9H2U9 754 aa9.52□□□□□ -0.89
SYNE1-217ENST00000466159 DNAJC17Q9NVM6 304 aaKnown RBP9.52□□□□□ -0.89
SYNE1-217ENST00000466159 CNTN6Q9UQ52 1028 aa9.52□□□□□ -0.89
SYNE1-217ENST00000466159 TLR3O15455 904 aaKnown RBP9.51□□□□□ -0.89
SYNE1-217ENST00000466159 FAM189A1O60320 539 aa9.51□□□□□ -0.89
SYNE1-217ENST00000466159 MSCO60682 206 aa9.51□□□□□ -0.89
SYNE1-217ENST00000466159 MAFO75444 373 aaPredicted RBP9.51□□□□□ -0.89
SYNE1-217ENST00000466159 ACSL3O95573 720 aa9.51□□□□□ -0.89
SYNE1-217ENST00000466159 CHN1P15882 459 aa9.51□□□□□ -0.89
SYNE1-217ENST00000466159 CD58P19256 250 aa9.51□□□□□ -0.89
SYNE1-217ENST00000466159 EDNRBP24530 442 aa9.51□□□□□ -0.89
SYNE1-217ENST00000466159 RPL7AP62424 266 aaKnown RBP9.51□□□□□ -0.89
SYNE1-217ENST00000466159 IFT88Q13099 833 aa9.51□□□□□ -0.89
SYNE1-217ENST00000466159 KLF1Q13351 362 aaPredicted RBP9.51□□□□□ -0.89
SYNE1-217ENST00000466159 ATP13A4Q4VNC1 1196 aa9.51□□□□□ -0.89
SYNE1-217ENST00000466159 ZNF394Q53GI3 561 aa9.51□□□□□ -0.89
SYNE1-217ENST00000466159 C6orf118Q5T5N4 469 aa9.51□□□□□ -0.89
SYNE1-217ENST00000466159 PLEKHA7Q6IQ23 1121 aa9.51□□□□□ -0.89
SYNE1-217ENST00000466159 TRIM72Q6ZMU5 477 aa9.51□□□□□ -0.89
SYNE1-217ENST00000466159 PHF13Q86YI8 300 aaPredicted RBP9.51□□□□□ -0.89
SYNE1-217ENST00000466159 LRRC71Q8N4P6 559 aa9.51□□□□□ -0.89
SYNE1-217ENST00000466159 ZNF668Q96K58 619 aaPredicted RBP9.51□□□□□ -0.89
SYNE1-217ENST00000466159 PWWP2AQ96N64 755 aa9.51□□□□□ -0.89
SYNE1-217ENST00000466159 MTMR12Q9C0I1 747 aa9.51□□□□□ -0.89
SYNE1-217ENST00000466159 MAF1Q9H063 256 aa9.51□□□□□ -0.89
SYNE1-217ENST00000466159 SPATC1LQ9H0A9 340 aa9.51□□□□□ -0.89
SYNE1-217ENST00000466159 CDC42EP4Q9H3Q1 356 aaKnown RBP9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms