RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 TFAMQ00059 246 aaKnown RBP20.26■□□□□ 0.83
USP39-209ENST00000458268 VARS2Q5ST30 1063 aaKnown RBP20.26■□□□□ 0.83
USP39-209ENST00000458268 LIN9Q5TKA1 542 aa20.26■□□□□ 0.83
USP39-209ENST00000458268 CRELD2Q6UXH1 353 aaPredicted RBP20.26■□□□□ 0.83
USP39-209ENST00000458268 SUSD6Q92537 303 aa20.26■□□□□ 0.83
USP39-209ENST00000458268 FAM84AQ96KN4 292 aa20.26■□□□□ 0.83
USP39-209ENST00000458268 CCDC195A0A1B0GUA6 201 aa20.25■□□□□ 0.83
USP39-209ENST00000458268 EIF3DO15371 548 aaKnown RBP eCLIP20.25■□□□□ 0.83
USP39-209ENST00000458268 IL18RAPO95256 599 aa20.25■□□□□ 0.83
USP39-209ENST00000458268 LDHAP00338 332 aaKnown RBP20.25■□□□□ 0.83
USP39-209ENST00000458268 CYP3A5P20815 502 aa20.25■□□□□ 0.83
USP39-209ENST00000458268 KMT5BQ4FZB7 885 aa20.25■□□□□ 0.83
USP39-209ENST00000458268 SPATA1Q5VX52 437 aa20.25■□□□□ 0.83
USP39-209ENST00000458268 LMBRD2Q68DH5 695 aaPredicted RBP20.25■□□□□ 0.83
USP39-209ENST00000458268 ANKS3Q6ZW76 656 aa20.25■□□□□ 0.83
USP39-209ENST00000458268 GPD1LQ8N335 351 aa20.25■□□□□ 0.83
USP39-209ENST00000458268 SMG7Q92540 1137 aaKnown RBP20.25■□□□□ 0.83
USP39-209ENST00000458268 MTRRQ9UBK8 725 aa20.25■□□□□ 0.83
USP39-209ENST00000458268 DPP7Q9UHL4 492 aa20.25■□□□□ 0.83
USP39-209ENST00000458268 USP25Q9UHP3 1055 aa20.25■□□□□ 0.83
USP39-209ENST00000458268 POLIQ9UNA4 740 aa20.25■□□□□ 0.83
USP39-209ENST00000458268 PVALEFA0A1B0GWK0 134 aa20.24■□□□□ 0.83
USP39-209ENST00000458268 A0A1W2PQ27 194 aa20.24■□□□□ 0.83
USP39-209ENST00000458268 A0A1W2PQ64 194 aa20.24■□□□□ 0.83
USP39-209ENST00000458268 A0A1W2PQD8 194 aa20.24■□□□□ 0.83
USP39-209ENST00000458268 EXTL3O43909 919 aa20.24■□□□□ 0.83
USP39-209ENST00000458268 ANP32AP39687 249 aaKnown RBP20.24■□□□□ 0.83
USP39-209ENST00000458268 WNT7BP56706 349 aa20.24■□□□□ 0.83
USP39-209ENST00000458268 ZBTB6Q15916 424 aa20.24■□□□□ 0.83
USP39-209ENST00000458268 CTXN3Q4LDR2 81 aa20.24■□□□□ 0.83
USP39-209ENST00000458268 CNNM4Q6P4Q7 775 aa20.24■□□□□ 0.83
USP39-209ENST00000458268 RSPO2Q6UXX9 243 aaPredicted RBP20.24■□□□□ 0.83
USP39-209ENST00000458268 BRSK2Q8IWQ3 736 aa20.24■□□□□ 0.83
USP39-209ENST00000458268 EFCAB13Q8IY85 973 aa20.24■□□□□ 0.83
USP39-209ENST00000458268 RDH13Q8NBN7 331 aa20.24■□□□□ 0.83
USP39-209ENST00000458268 SUSD3Q96L08 255 aa20.24■□□□□ 0.83
USP39-209ENST00000458268 NECTIN4Q96NY8 510 aa20.24■□□□□ 0.83
USP39-209ENST00000458268 ASB7Q9H672 318 aa20.24■□□□□ 0.83
USP39-209ENST00000458268 EPHX3Q9H6B9 360 aa20.24■□□□□ 0.83
USP39-209ENST00000458268 DPP3Q9NY33 737 aa20.24■□□□□ 0.83
USP39-209ENST00000458268 SCN1AP35498 2009 aa20.24■□□□□ 0.83
USP39-209ENST00000458268 C5orf42Q9H799 3197 aa20.24■□□□□ 0.83
USP39-209ENST00000458268 H7C4K7 107 aa20.23■□□□□ 0.83
USP39-209ENST00000458268 SYN3O14994 580 aa20.23■□□□□ 0.83
USP39-209ENST00000458268 ZNF202O95125 648 aa20.23■□□□□ 0.83
USP39-209ENST00000458268 RPN1P04843 607 aaKnown RBP20.23■□□□□ 0.83
USP39-209ENST00000458268 LRPAP1P30533 357 aa20.23■□□□□ 0.83
USP39-209ENST00000458268 HOXD13P35453 343 aa20.23■□□□□ 0.83
USP39-209ENST00000458268 PPM1LQ5SGD2 360 aa20.23■□□□□ 0.83
USP39-209ENST00000458268 C9orf57Q5W0N0 161 aa20.23■□□□□ 0.83
USP39-209ENST00000458268 ZNF280DQ6N043 979 aa20.23■□□□□ 0.83
USP39-209ENST00000458268 KRBA2Q6ZNG9 492 aa20.23■□□□□ 0.83
USP39-209ENST00000458268 EPM2AIP1Q7L775 607 aaPredicted RBP20.23■□□□□ 0.83
USP39-209ENST00000458268 HS2ST1Q7LGA3 356 aa20.23■□□□□ 0.83
USP39-209ENST00000458268 GPR149Q86SP6 731 aa20.23■□□□□ 0.83
USP39-209ENST00000458268 USP37Q86T82 979 aa20.23■□□□□ 0.83
USP39-209ENST00000458268 GPR65Q8IYL9 337 aa20.23■□□□□ 0.83
USP39-209ENST00000458268 APPL2Q8NEU8 664 aa20.23■□□□□ 0.83
USP39-209ENST00000458268 ZNF507Q8TCN5 953 aa20.23■□□□□ 0.83
USP39-209ENST00000458268 SCFD1Q8WVM8 642 aa20.23■□□□□ 0.83
USP39-209ENST00000458268 CCDC47Q96A33 483 aaKnown RBP20.23■□□□□ 0.83
USP39-209ENST00000458268 PDE11AQ9HCR9 933 aa20.23■□□□□ 0.83
USP39-209ENST00000458268 HSPBP1Q9NZL4 362 aa20.23■□□□□ 0.83
USP39-209ENST00000458268 MUTYHQ9UIF7 546 aa20.23■□□□□ 0.83
USP39-209ENST00000458268 PCDHB8Q9UN66 801 aa20.23■□□□□ 0.83
USP39-209ENST00000458268 UBE4BO95155 1302 aa20.23■□□□□ 0.83
USP39-209ENST00000458268 C19orf67A6NJJ6 358 aa20.22■□□□□ 0.83
USP39-209ENST00000458268 KLRC4O43908 158 aa20.22■□□□□ 0.83
USP39-209ENST00000458268 C8AP07357 584 aa20.22■□□□□ 0.83
USP39-209ENST00000458268 KRT19P08727 400 aa20.22■□□□□ 0.83
USP39-209ENST00000458268 TMEM191BP0C7N4 346 aa20.22■□□□□ 0.83
USP39-209ENST00000458268 CPB1P15086 417 aa20.22■□□□□ 0.83
USP39-209ENST00000458268 CCDC149Q6ZUS6 474 aa20.22■□□□□ 0.83
USP39-209ENST00000458268 RNF135Q8IUD6 432 aa20.22■□□□□ 0.83
USP39-209ENST00000458268 CBWD2Q8IUF1 395 aa20.22■□□□□ 0.83
USP39-209ENST00000458268 SLC7A14Q8TBB6 771 aa20.22■□□□□ 0.83
USP39-209ENST00000458268 PLEKHA4Q9H4M7 779 aa20.22■□□□□ 0.83
USP39-209ENST00000458268 AGPAT3Q9NRZ7 376 aa20.22■□□□□ 0.83
USP39-209ENST00000458268 FBXW11Q9UKB1 542 aa20.22■□□□□ 0.83
USP39-209ENST00000458268 DERAQ9Y315 318 aa20.22■□□□□ 0.83
USP39-209ENST00000458268 C2CD2Q9Y426 696 aa20.22■□□□□ 0.83
USP39-209ENST00000458268 NR2E1Q9Y466 385 aa20.22■□□□□ 0.83
USP39-209ENST00000458268 DENND4AQ7Z401 1863 aa20.22■□□□□ 0.83
USP39-209ENST00000458268 BDP1A6H8Y1 2624 aa20.22■□□□□ 0.83
USP39-209ENST00000458268 FAM86C2PA6NEL3 165 aa20.21■□□□□ 0.83
USP39-209ENST00000458268 C2CD4DB7Z1M9 353 aa20.21■□□□□ 0.83
USP39-209ENST00000458268 CCL16O15467 120 aa20.21■□□□□ 0.83
USP39-209ENST00000458268 CLSTN1O94985 981 aa20.21■□□□□ 0.83
USP39-209ENST00000458268 ADRB2P07550 413 aa20.21■□□□□ 0.83
USP39-209ENST00000458268 CDR1P51861 262 aa20.21■□□□□ 0.83
USP39-209ENST00000458268 ROR1Q01973 937 aa20.21■□□□□ 0.83
USP39-209ENST00000458268 EHHADHQ08426 723 aa20.21■□□□□ 0.83
USP39-209ENST00000458268 STK4Q13043 487 aa20.21■□□□□ 0.83
USP39-209ENST00000458268 LILRA6Q6PI73 481 aa20.21■□□□□ 0.83
USP39-209ENST00000458268 TDRD5Q8NAT2 981 aaKnown RBP20.21■□□□□ 0.83
USP39-209ENST00000458268 SENP8Q96LD8 212 aa20.21■□□□□ 0.83
USP39-209ENST00000458268 TSPAN18Q96SJ8 248 aa20.21■□□□□ 0.83
USP39-209ENST00000458268 FBXL5Q9UKA1 691 aa20.21■□□□□ 0.83
USP39-209ENST00000458268 GTF3C5Q9Y5Q8 519 aaPredicted RBP20.21■□□□□ 0.83
USP39-209ENST00000458268 BACE2Q9Y5Z0 518 aa20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms