RNA–Protein interactions for RNA: ENST00000429896.6

PTCH1-207, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 6,563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-207ENST00000429896 SPATA17Q96L03 361 aa13.71□□□□□ -0.21
PTCH1-207ENST00000429896 CALN1Q9BXU9 219 aa13.71□□□□□ -0.21
PTCH1-207ENST00000429896 ZWILCHQ9H900 591 aa13.71□□□□□ -0.21
PTCH1-207ENST00000429896 ABHD10Q9NUJ1 306 aa13.71□□□□□ -0.21
PTCH1-207ENST00000429896 PKN2Q16513 984 aaKnown RBP13.71□□□□□ -0.22
PTCH1-207ENST00000429896 CHMP6Q96FZ7 201 aa13.71□□□□□ -0.22
PTCH1-207ENST00000429896 DONSONQ9NYP3 566 aa13.71□□□□□ -0.22
PTCH1-207ENST00000429896 CARNS1A5YM72 827 aa13.71□□□□□ -0.22
PTCH1-207ENST00000429896 CYB561D2O14569 222 aa13.71□□□□□ -0.22
PTCH1-207ENST00000429896 CCL5P13501 91 aa13.71□□□□□ -0.22
PTCH1-207ENST00000429896 SIAH1Q8IUQ4 282 aa13.71□□□□□ -0.22
PTCH1-207ENST00000429896 CEP120Q8N960 986 aa13.71□□□□□ -0.22
PTCH1-207ENST00000429896 HSPH1Q92598 858 aa13.71□□□□□ -0.22
PTCH1-207ENST00000429896 SCYL1Q96KG9 808 aa13.71□□□□□ -0.22
PTCH1-207ENST00000429896 SMIM35A0A1B0GVV1 85 aa13.7□□□□□ -0.22
PTCH1-207ENST00000429896 CASTOR2A6NHX0 329 aa13.7□□□□□ -0.22
PTCH1-207ENST00000429896 IGF2BP3O00425 579 aaKnown RBP eCLIP13.7□□□□□ -0.22
PTCH1-207ENST00000429896 TEX33O43247 280 aa13.7□□□□□ -0.22
PTCH1-207ENST00000429896 GLRA2P23416 452 aa13.7□□□□□ -0.22
PTCH1-207ENST00000429896 CYP24A1Q07973 514 aa13.7□□□□□ -0.22
PTCH1-207ENST00000429896 UGCGQ16739 394 aa13.7□□□□□ -0.22
PTCH1-207ENST00000429896 CCNYQ8ND76 341 aa13.7□□□□□ -0.22
PTCH1-207ENST00000429896 TMC2Q8TDI7 906 aa13.7□□□□□ -0.22
PTCH1-207ENST00000429896 EDEM3Q9BZQ6 932 aa13.7□□□□□ -0.22
PTCH1-207ENST00000429896 BLOC1S4Q9NUP1 217 aa13.7□□□□□ -0.22
PTCH1-207ENST00000429896 FNDC3AQ9Y2H6 1198 aaKnown RBP13.7□□□□□ -0.22
PTCH1-207ENST00000429896 SSTR3P32745 418 aaPredicted RBP13.7□□□□□ -0.22
PTCH1-207ENST00000429896 ACRBPQ8NEB7 543 aa13.7□□□□□ -0.22
PTCH1-207ENST00000429896 WEE2P0C1S8 567 aa13.7□□□□□ -0.22
PTCH1-207ENST00000429896 CTXN3Q4LDR2 81 aa13.7□□□□□ -0.22
PTCH1-207ENST00000429896 C1orf186Q6ZWK4 172 aa13.7□□□□□ -0.22
PTCH1-207ENST00000429896 CLGNO14967 610 aa13.7□□□□□ -0.22
PTCH1-207ENST00000429896 CASP2P42575 452 aa13.7□□□□□ -0.22
PTCH1-207ENST00000429896 IL1RL1Q01638 556 aa13.7□□□□□ -0.22
PTCH1-207ENST00000429896 MYBPC2Q14324 1141 aa13.7□□□□□ -0.22
PTCH1-207ENST00000429896 ELF2Q15723 593 aa13.7□□□□□ -0.22
PTCH1-207ENST00000429896 RNF219Q5W0B1 726 aaPredicted RBP13.7□□□□□ -0.22
PTCH1-207ENST00000429896 PPP4R4Q6NUP7 873 aa13.7□□□□□ -0.22
PTCH1-207ENST00000429896 STKLD1Q8NE28 680 aa13.7□□□□□ -0.22
PTCH1-207ENST00000429896 CALR3Q96L12 384 aaKnown RBP13.7□□□□□ -0.22
PTCH1-207ENST00000429896 AGPAT1Q99943 283 aa13.7□□□□□ -0.22
PTCH1-207ENST00000429896 VAV3Q9UKW4 847 aa13.7□□□□□ -0.22
PTCH1-207ENST00000429896 ITGA11Q9UKX5 1188 aa13.7□□□□□ -0.22
PTCH1-207ENST00000429896 LRRD1A4D1F6 860 aa13.7□□□□□ -0.22
PTCH1-207ENST00000429896 SELPP16109 830 aa13.7□□□□□ -0.22
PTCH1-207ENST00000429896 TCP1P17987 556 aaKnown RBP13.7□□□□□ -0.22
PTCH1-207ENST00000429896 EIF4BP23588 611 aaKnown RBP13.7□□□□□ -0.22
PTCH1-207ENST00000429896 PPP2R5EQ16537 467 aa13.7□□□□□ -0.22
PTCH1-207ENST00000429896 FAM102AQ5T9C2 384 aaPredicted RBP13.7□□□□□ -0.22
PTCH1-207ENST00000429896 PI4K2AQ9BTU6 479 aa13.7□□□□□ -0.22
PTCH1-207ENST00000429896 FAM49BQ9NUQ9 324 aa13.7□□□□□ -0.22
PTCH1-207ENST00000429896 CDK17Q00537 523 aa13.69□□□□□ -0.22
PTCH1-207ENST00000429896 ARHGAP15Q53QZ3 475 aa13.69□□□□□ -0.22
PTCH1-207ENST00000429896 C7orf61Q8IZ16 206 aa13.69□□□□□ -0.22
PTCH1-207ENST00000429896 NPLOC4Q8TAT6 608 aa13.69□□□□□ -0.22
PTCH1-207ENST00000429896 ZNF507Q8TCN5 953 aa13.69□□□□□ -0.22
PTCH1-207ENST00000429896 MCUR1Q96AQ8 359 aa13.69□□□□□ -0.22
PTCH1-207ENST00000429896 DDX50Q9BQ39 737 aaKnown RBP13.69□□□□□ -0.22
PTCH1-207ENST00000429896 KRT10P13645 584 aa13.69□□□□□ -0.22
PTCH1-207ENST00000429896 TMC7Q7Z402 723 aa13.69□□□□□ -0.22
PTCH1-207ENST00000429896 HASPINQ8TF76 798 aa13.69□□□□□ -0.22
PTCH1-207ENST00000429896 RNPEPQ9H4A4 650 aa13.69□□□□□ -0.22
PTCH1-207ENST00000429896 C11orf49Q9H6J7 331 aa13.69□□□□□ -0.22
PTCH1-207ENST00000429896 CCNE2O96020 404 aa13.69□□□□□ -0.22
PTCH1-207ENST00000429896 ZNF280DQ6N043 979 aa13.69□□□□□ -0.22
PTCH1-207ENST00000429896 TNFRSF25Q93038 417 aa13.69□□□□□ -0.22
PTCH1-207ENST00000429896 ZNF512Q96ME7 567 aaPredicted RBP13.69□□□□□ -0.22
PTCH1-207ENST00000429896 ANAPC7Q9UJX3 599 aa13.69□□□□□ -0.22
PTCH1-207ENST00000429896 PTCH2Q9Y6C5 1203 aa13.69□□□□□ -0.22
PTCH1-207ENST00000429896 ATICP31939 592 aa13.69□□□□□ -0.22
PTCH1-207ENST00000429896 SLC12A2P55011 1212 aa13.69□□□□□ -0.22
PTCH1-207ENST00000429896 NME3Q13232 169 aa13.69□□□□□ -0.22
PTCH1-207ENST00000429896 MAP4K3Q8IVH8 894 aa13.69□□□□□ -0.22
PTCH1-207ENST00000429896 DPP7Q9UHL4 492 aa13.69□□□□□ -0.22
PTCH1-207ENST00000429896 ZNF148Q9UQR1 794 aa13.69□□□□□ -0.22
PTCH1-207ENST00000429896 HTRA3P83110 453 aa13.69□□□□□ -0.22
PTCH1-207ENST00000429896 LLGL1Q15334 1064 aa13.69□□□□□ -0.22
PTCH1-207ENST00000429896 KCNK18Q7Z418 384 aa13.69□□□□□ -0.22
PTCH1-207ENST00000429896 ADGRF2Q8IZF7 708 aa13.69□□□□□ -0.22
PTCH1-207ENST00000429896 TACO1Q9BSH4 297 aaKnown RBP13.69□□□□□ -0.22
PTCH1-207ENST00000429896 SMYD2Q9NRG4 433 aa13.69□□□□□ -0.22
PTCH1-207ENST00000429896 LSM7Q9UK45 103 aaKnown RBP13.69□□□□□ -0.22
PTCH1-207ENST00000429896 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.68□□□□□ -0.22
PTCH1-207ENST00000429896 MOCS3O95396 460 aa13.68□□□□□ -0.22
PTCH1-207ENST00000429896 GOLGA7BQ2TAP0 167 aa13.68□□□□□ -0.22
PTCH1-207ENST00000429896 IFT20Q8IY31 132 aa13.68□□□□□ -0.22
PTCH1-207ENST00000429896 DACT3Q96B18 629 aaPredicted RBP13.68□□□□□ -0.22
PTCH1-207ENST00000429896 MED15Q96RN5 788 aa13.68□□□□□ -0.22
PTCH1-207ENST00000429896 ABI2Q9NYB9 513 aaPredicted RBP13.68□□□□□ -0.22
PTCH1-207ENST00000429896 CLK2P49760 499 aaKnown RBP13.68□□□□□ -0.22
PTCH1-207ENST00000429896 TTC30AQ86WT1 665 aa13.68□□□□□ -0.22
PTCH1-207ENST00000429896 USP38Q8NB14 1042 aa13.68□□□□□ -0.22
PTCH1-207ENST00000429896 PPFIBP2Q8ND30 876 aa13.68□□□□□ -0.22
PTCH1-207ENST00000429896 HSD17B14Q9BPX1 270 aa13.68□□□□□ -0.22
PTCH1-207ENST00000429896 NUF2Q9BZD4 464 aa13.68□□□□□ -0.22
PTCH1-207ENST00000429896 LYPLA2O95372 231 aa13.68□□□□□ -0.22
PTCH1-207ENST00000429896 CD52P31358 61 aa13.68□□□□□ -0.22
PTCH1-207ENST00000429896 DYNLT1P63172 113 aa13.68□□□□□ -0.22
PTCH1-207ENST00000429896 AMHR2Q16671 573 aa13.68□□□□□ -0.22
PTCH1-207ENST00000429896 TTC19Q6DKK2 380 aaPredicted RBP13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms