RNA–Protein interactions for RNA: ENST00000428445.1

VARS-216, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 863 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-216ENST00000428445 ANKFY1Q9P2R3 1169 aa18.1■□□□□ 0.49
VARS-216ENST00000428445 TIMM13Q9Y5L4 95 aaPredicted RBP18.1■□□□□ 0.49
VARS-216ENST00000428445 INSL5Q9Y5Q6 135 aa18.1■□□□□ 0.49
VARS-216ENST00000428445 NCANO14594 1321 aa18.09■□□□□ 0.49
VARS-216ENST00000428445 OR4Q2P0C623 313 aa18.09■□□□□ 0.49
VARS-216ENST00000428445 U2AF2P26368 475 aaKnown RBP eCLIP18.09■□□□□ 0.49
VARS-216ENST00000428445 MCM4P33991 863 aa18.09■□□□□ 0.49
VARS-216ENST00000428445 VIPR2P41587 438 aa18.09■□□□□ 0.49
VARS-216ENST00000428445 CDR1P51861 262 aa18.09■□□□□ 0.49
VARS-216ENST00000428445 TWF1Q12792 350 aa18.09■□□□□ 0.49
VARS-216ENST00000428445 KRT79Q5XKE5 535 aa18.09■□□□□ 0.49
VARS-216ENST00000428445 RNF19BQ6ZMZ0 732 aa18.09■□□□□ 0.49
VARS-216ENST00000428445 RTL10Q7L3V2 364 aa18.09■□□□□ 0.49
VARS-216ENST00000428445 TCEAL8Q8IYN2 117 aa18.09■□□□□ 0.49
VARS-216ENST00000428445 DDX12PQ92771 950 aa18.09■□□□□ 0.49
VARS-216ENST00000428445 CLDN23Q96B33 292 aa18.09■□□□□ 0.49
VARS-216ENST00000428445 PNMA5Q96PV4 448 aa18.09■□□□□ 0.49
VARS-216ENST00000428445 KIF2CQ99661 725 aa18.09■□□□□ 0.49
VARS-216ENST00000428445 OSBPL6Q9BZF3 934 aa18.09■□□□□ 0.49
VARS-216ENST00000428445 AVENQ9NQS1 362 aaPredicted RBP18.09■□□□□ 0.49
VARS-216ENST00000428445 FBXO4Q9UKT5 387 aa18.09■□□□□ 0.49
VARS-216ENST00000428445 STK24Q9Y6E0 443 aa18.09■□□□□ 0.49
VARS-216ENST00000428445 TICRRQ7Z2Z1 1910 aa18.09■□□□□ 0.49
VARS-216ENST00000428445 SYN3O14994 580 aa18.08■□□□□ 0.48
VARS-216ENST00000428445 MYL4P12829 197 aa18.08■□□□□ 0.48
VARS-216ENST00000428445 RPL9P32969 192 aaKnown RBP18.08■□□□□ 0.48
VARS-216ENST00000428445 GUCY2FP51841 1108 aa18.08■□□□□ 0.48
VARS-216ENST00000428445 MTAPQ13126 283 aa18.08■□□□□ 0.48
VARS-216ENST00000428445 RSPO4Q2I0M5 234 aaPredicted RBP18.08■□□□□ 0.48
VARS-216ENST00000428445 ZNF528Q3MIS6 628 aa18.08■□□□□ 0.48
VARS-216ENST00000428445 VITQ6UXI7 678 aa18.08■□□□□ 0.48
VARS-216ENST00000428445 ZNF852Q6ZMS4 543 aa18.08■□□□□ 0.48
VARS-216ENST00000428445 PDZD4Q76G19 769 aaPredicted RBP18.08■□□□□ 0.48
VARS-216ENST00000428445 ATRIPQ8WXE1 791 aa18.08■□□□□ 0.48
VARS-216ENST00000428445 SUSD3Q96L08 255 aa18.08■□□□□ 0.48
VARS-216ENST00000428445 DRC1Q96MC2 740 aa18.08■□□□□ 0.48
VARS-216ENST00000428445 PGLYRP2Q96PD5 576 aa18.08■□□□□ 0.48
VARS-216ENST00000428445 BRD9Q9H8M2 597 aa18.08■□□□□ 0.48
VARS-216ENST00000428445 ZFP14Q9HCL3 533 aa18.08■□□□□ 0.48
VARS-216ENST00000428445 CEP250Q9BV73 2442 aa18.08■□□□□ 0.48
VARS-216ENST00000428445 F5P12259 2224 aa18.07■□□□□ 0.48
VARS-216ENST00000428445 H7C4K7 107 aa18.07■□□□□ 0.48
VARS-216ENST00000428445 VNN2O95498 520 aa18.07■□□□□ 0.48
VARS-216ENST00000428445 CXCL8P10145 99 aa18.07■□□□□ 0.48
VARS-216ENST00000428445 GDI1P31150 447 aa18.07■□□□□ 0.48
VARS-216ENST00000428445 TNFSF9P41273 254 aa18.07■□□□□ 0.48
VARS-216ENST00000428445 HMGN5P82970 282 aaKnown RBP18.07■□□□□ 0.48
VARS-216ENST00000428445 DTHD1Q6ZMT9 781 aa18.07■□□□□ 0.48
VARS-216ENST00000428445 ZNF687Q8N1G0 1237 aa18.07■□□□□ 0.48
VARS-216ENST00000428445 TMEM161BQ8NDZ6 487 aa18.07■□□□□ 0.48
VARS-216ENST00000428445 ZSCAN31Q96LW9 406 aaPredicted RBP18.07■□□□□ 0.48
VARS-216ENST00000428445 ASB16Q96NS5 453 aa18.07■□□□□ 0.48
VARS-216ENST00000428445 TRMT61BQ9BVS5 477 aaKnown RBP18.07■□□□□ 0.48
VARS-216ENST00000428445 CRISPLD1Q9H336 500 aa18.07■□□□□ 0.48
VARS-216ENST00000428445 EIF4ENIF1Q9NRA8 985 aaKnown RBP18.07■□□□□ 0.48
VARS-216ENST00000428445 RBM19Q9Y4C8 960 aaKnown RBP18.07■□□□□ 0.48
VARS-216ENST00000428445 CACNA1AO00555 2505 aa18.07■□□□□ 0.48
VARS-216ENST00000428445 CPB1P15086 417 aa18.06■□□□□ 0.48
VARS-216ENST00000428445 MATR3P43243 847 aaKnown RBP eCLIP18.06■□□□□ 0.48
VARS-216ENST00000428445 NOLC1Q14978 699 aaKnown RBP eCLIP18.06■□□□□ 0.48
VARS-216ENST00000428445 TEAD2Q15562 447 aa18.06■□□□□ 0.48
VARS-216ENST00000428445 CYP4A22Q5TCH4 519 aa18.06■□□□□ 0.48
VARS-216ENST00000428445 ZBTB44Q8NCP5 570 aa18.06■□□□□ 0.48
VARS-216ENST00000428445 RSPRY1Q96DX4 576 aa18.06■□□□□ 0.48
VARS-216ENST00000428445 ZNF512Q96ME7 567 aaPredicted RBP18.06■□□□□ 0.48
VARS-216ENST00000428445 NELL2Q99435 816 aa18.06■□□□□ 0.48
VARS-216ENST00000428445 NTPCRQ9BSD7 190 aaKnown RBP18.06■□□□□ 0.48
VARS-216ENST00000428445 RAB34Q9BZG1 259 aa18.06■□□□□ 0.48
VARS-216ENST00000428445 ZNF334Q9HCZ1 680 aaPredicted RBP18.06■□□□□ 0.48
VARS-216ENST00000428445 ZSCAN32Q9NX65 697 aa18.06■□□□□ 0.48
VARS-216ENST00000428445 NCDNQ9UBB6 729 aa18.06■□□□□ 0.48
VARS-216ENST00000428445 ANK1P16157 1881 aa18.05■□□□□ 0.48
VARS-216ENST00000428445 ZNF197O14709 1029 aa18.05■□□□□ 0.48
VARS-216ENST00000428445 TOM1L1O75674 476 aa18.05■□□□□ 0.48
VARS-216ENST00000428445 MAPTP10636 758 aaKnown RBP18.05■□□□□ 0.48
VARS-216ENST00000428445 PLS3P13797 630 aa18.05■□□□□ 0.48
VARS-216ENST00000428445 MARCKSP29966 332 aaPredicted RBP18.05■□□□□ 0.48
VARS-216ENST00000428445 STRN3Q13033 797 aa18.05■□□□□ 0.48
VARS-216ENST00000428445 PUM1Q14671 1186 aaKnown RBP eCLIP18.05■□□□□ 0.48
VARS-216ENST00000428445 LPAL2Q16609 132 aa18.05■□□□□ 0.48
VARS-216ENST00000428445 TPGS2Q68CL5 300 aa18.05■□□□□ 0.48
VARS-216ENST00000428445 MCTP1Q6DN14 999 aa18.05■□□□□ 0.48
VARS-216ENST00000428445 ZNF280DQ6N043 979 aa18.05■□□□□ 0.48
VARS-216ENST00000428445 MAP4K3Q8IVH8 894 aa18.05■□□□□ 0.48
VARS-216ENST00000428445 ZSCAN18Q8TBC5 510 aaPredicted RBP18.05■□□□□ 0.48
VARS-216ENST00000428445 LMAN1LQ9HAT1 526 aa18.05■□□□□ 0.48
VARS-216ENST00000428445 AFF4Q9UHB7 1163 aaKnown RBP18.05■□□□□ 0.48
VARS-216ENST00000428445 PCDHB8Q9UN66 801 aa18.05■□□□□ 0.48
VARS-216ENST00000428445 SLC27A5Q9Y2P5 690 aa18.05■□□□□ 0.48
VARS-216ENST00000428445 COL4A2P08572 1712 aa18.05■□□□□ 0.48
VARS-216ENST00000428445 PPEF2O14830 753 aa18.04■□□□□ 0.48
VARS-216ENST00000428445 NCAM2O15394 837 aa18.04■□□□□ 0.48
VARS-216ENST00000428445 LILRB5O75023 590 aa18.04■□□□□ 0.48
VARS-216ENST00000428445 SOAT2O75908 522 aa18.04■□□□□ 0.48
VARS-216ENST00000428445 GUCY2CP25092 1073 aa18.04■□□□□ 0.48
VARS-216ENST00000428445 HOXC13P31276 330 aa18.04■□□□□ 0.48
VARS-216ENST00000428445 RPS9P46781 194 aaKnown RBP18.04■□□□□ 0.48
VARS-216ENST00000428445 SLC12A3P55017 1021 aa18.04■□□□□ 0.48
VARS-216ENST00000428445 ARSHQ5FYA8 562 aa18.04■□□□□ 0.48
VARS-216ENST00000428445 STXBP5Q5T5C0 1151 aa18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms