RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 CENPCQ03188 943 aa11.34□□□□□ -0.59
USP54-204ENST00000422491 GABPAQ06546 454 aa11.34□□□□□ -0.59
USP54-204ENST00000422491 PPP3CAQ08209 521 aa11.34□□□□□ -0.59
USP54-204ENST00000422491 KLF1Q13351 362 aaPredicted RBP11.34□□□□□ -0.59
USP54-204ENST00000422491 GPATCH4Q5T3I0 446 aaKnown RBP11.34□□□□□ -0.59
USP54-204ENST00000422491 FYB2Q5VWT5 728 aa11.34□□□□□ -0.59
USP54-204ENST00000422491 KCTD1Q719H9 257 aa11.34□□□□□ -0.59
USP54-204ENST00000422491 ANKS1BQ7Z6G8 1248 aa11.34□□□□□ -0.59
USP54-204ENST00000422491 SLC51AQ86UW1 340 aa11.34□□□□□ -0.59
USP54-204ENST00000422491 SLC47A2Q86VL8 602 aa11.34□□□□□ -0.59
USP54-204ENST00000422491 SLC9A9Q8IVB4 645 aa11.34□□□□□ -0.59
USP54-204ENST00000422491 LARGE2Q8N3Y3 721 aa11.34□□□□□ -0.59
USP54-204ENST00000422491 ZNF276Q8N554 614 aa11.34□□□□□ -0.59
USP54-204ENST00000422491 CCDC89Q8N998 374 aa11.34□□□□□ -0.59
USP54-204ENST00000422491 RDH13Q8NBN7 331 aa11.34□□□□□ -0.59
USP54-204ENST00000422491 NDNQ99608 321 aa11.34□□□□□ -0.59
USP54-204ENST00000422491 SPATA16Q9BXB7 569 aa11.34□□□□□ -0.59
USP54-204ENST00000422491 WASF2Q9Y6W5 498 aa11.34□□□□□ -0.59
USP54-204ENST00000422491 F5H6K3 240 aa11.34□□□□□ -0.59
USP54-204ENST00000422491 HAUS5O94927 633 aa11.34□□□□□ -0.59
USP54-204ENST00000422491 UBTFL6P0CB48 400 aaPredicted RBP11.34□□□□□ -0.59
USP54-204ENST00000422491 KRT15P19012 456 aa11.34□□□□□ -0.59
USP54-204ENST00000422491 KLRC2P26717 231 aa11.34□□□□□ -0.59
USP54-204ENST00000422491 NEK3P51956 506 aa11.34□□□□□ -0.59
USP54-204ENST00000422491 AP3B2Q13367 1082 aa11.34□□□□□ -0.59
USP54-204ENST00000422491 HHATQ5VTY9 493 aa11.34□□□□□ -0.59
USP54-204ENST00000422491 PCNX4Q63HM2 1172 aa11.34□□□□□ -0.59
USP54-204ENST00000422491 LVRNQ6Q4G3 990 aa11.34□□□□□ -0.59
USP54-204ENST00000422491 DPP8Q6V1X1 898 aaPredicted RBP11.34□□□□□ -0.59
USP54-204ENST00000422491 RINLQ6ZS11 566 aa11.34□□□□□ -0.59
USP54-204ENST00000422491 ARHGAP18Q8N392 663 aa11.34□□□□□ -0.59
USP54-204ENST00000422491 FAM20AQ96MK3 541 aa11.34□□□□□ -0.59
USP54-204ENST00000422491 TTC25Q96NG3 672 aa11.34□□□□□ -0.59
USP54-204ENST00000422491 DDX50Q9BQ39 737 aaKnown RBP11.34□□□□□ -0.59
USP54-204ENST00000422491 TUBB6Q9BUF5 446 aa11.34□□□□□ -0.59
USP54-204ENST00000422491 FOXP3Q9BZS1 431 aa11.34□□□□□ -0.59
USP54-204ENST00000422491 ANKFY1Q9P2R3 1169 aa11.34□□□□□ -0.59
USP54-204ENST00000422491 DCTN4Q9UJW0 460 aa11.34□□□□□ -0.59
USP54-204ENST00000422491 SLC4A7Q9Y6M7 1214 aa11.34□□□□□ -0.59
USP54-204ENST00000422491 ZNFX1Q9P2E3 1918 aaKnown RBP11.34□□□□□ -0.59
USP54-204ENST00000422491 UMODL1Q5DID0 1318 aa11.34□□□□□ -0.59
USP54-204ENST00000422491 A0A1W2PPM1 405 aa11.33□□□□□ -0.59
USP54-204ENST00000422491 CFAP69A5D8W1 941 aa11.33□□□□□ -0.59
USP54-204ENST00000422491 POC1B-GALNT4F8VUJ3 575 aa11.33□□□□□ -0.59
USP54-204ENST00000422491 MSH4O15457 936 aa11.33□□□□□ -0.59
USP54-204ENST00000422491 TROVE2P10155 538 aaKnown RBP eCLIP11.33□□□□□ -0.59
USP54-204ENST00000422491 PYGBP11216 843 aa11.33□□□□□ -0.59
USP54-204ENST00000422491 RBM5P52756 815 aaKnown RBP eCLIP11.33□□□□□ -0.59
USP54-204ENST00000422491 MCL1Q07820 350 aa11.33□□□□□ -0.59
USP54-204ENST00000422491 CCDC142Q17RM4 750 aa11.33□□□□□ -0.59
USP54-204ENST00000422491 QRICH1Q2TAL8 776 aa11.33□□□□□ -0.59
USP54-204ENST00000422491 ZNF365Q70YC5 407 aa11.33□□□□□ -0.59
USP54-204ENST00000422491 NSL1Q96IY1 281 aa11.33□□□□□ -0.59
USP54-204ENST00000422491 HAPLN3Q96S86 360 aa11.33□□□□□ -0.59
USP54-204ENST00000422491 CCDC28BQ9BUN5 200 aa11.33□□□□□ -0.59
USP54-204ENST00000422491 MAK16Q9BXY0 300 aaKnown RBP11.33□□□□□ -0.59
USP54-204ENST00000422491 ASCC2Q9H1I8 757 aaPredicted RBP11.33□□□□□ -0.59
USP54-204ENST00000422491 ZWILCHQ9H900 591 aa11.33□□□□□ -0.59
USP54-204ENST00000422491 BTG4Q9NY30 223 aa11.33□□□□□ -0.59
USP54-204ENST00000422491 TAS2R1Q9NYW7 299 aa11.33□□□□□ -0.59
USP54-204ENST00000422491 TBC1D30Q9Y2I9 924 aa11.33□□□□□ -0.59
USP54-204ENST00000422491 PCDHA1Q9Y5I3 950 aa11.33□□□□□ -0.59
USP54-204ENST00000422491 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.33□□□□□ -0.59
USP54-204ENST00000422491 CYP26A1O43174 497 aa11.33□□□□□ -0.6
USP54-204ENST00000422491 DNAJC6O75061 913 aa11.33□□□□□ -0.6
USP54-204ENST00000422491 ADRA2BP18089 450 aa11.33□□□□□ -0.6
USP54-204ENST00000422491 RASA3Q14644 834 aa11.33□□□□□ -0.6
USP54-204ENST00000422491 C1orf220Q5T0J3 134 aa11.33□□□□□ -0.6
USP54-204ENST00000422491 FAM178BQ8IXR5 827 aa11.33□□□□□ -0.6
USP54-204ENST00000422491 KCTD17Q8N5Z5 321 aa11.33□□□□□ -0.6
USP54-204ENST00000422491 STMN2Q93045 179 aa11.33□□□□□ -0.6
USP54-204ENST00000422491 MCUR1Q96AQ8 359 aa11.33□□□□□ -0.6
USP54-204ENST00000422491 SKA1Q96BD8 255 aa11.33□□□□□ -0.6
USP54-204ENST00000422491 OPTNQ96CV9 577 aa11.33□□□□□ -0.6
USP54-204ENST00000422491 DDX27Q96GQ7 796 aaKnown RBP11.33□□□□□ -0.6
USP54-204ENST00000422491 PRR11Q96HE9 360 aaPredicted RBP11.33□□□□□ -0.6
USP54-204ENST00000422491 KREMEN1Q96MU8 473 aa11.33□□□□□ -0.6
USP54-204ENST00000422491 SAYSD1Q9NPB0 183 aa11.33□□□□□ -0.6
USP54-204ENST00000422491 HEY2Q9UBP5 337 aa11.33□□□□□ -0.6
USP54-204ENST00000422491 SEL1LQ9UBV2 794 aa11.33□□□□□ -0.6
USP54-204ENST00000422491 PHF24Q9UPV7 400 aa11.33□□□□□ -0.6
USP54-204ENST00000422491 A8MXQ7 604 aa11.33□□□□□ -0.6
USP54-204ENST00000422491 P4HA2O15460 535 aa11.33□□□□□ -0.6
USP54-204ENST00000422491 ZCCHC18P0CG32 403 aa11.33□□□□□ -0.6
USP54-204ENST00000422491 TM4SF1P30408 202 aa11.33□□□□□ -0.6
USP54-204ENST00000422491 OVGP1Q12889 678 aa11.33□□□□□ -0.6
USP54-204ENST00000422491 FASTKD3Q14CZ7 662 aaKnown RBP11.33□□□□□ -0.6
USP54-204ENST00000422491 RASA2Q15283 850 aa11.33□□□□□ -0.6
USP54-204ENST00000422491 CCNG2Q16589 344 aa11.33□□□□□ -0.6
USP54-204ENST00000422491 DAB2IPQ5VWQ8 1189 aa11.33□□□□□ -0.6
USP54-204ENST00000422491 CEP128Q6ZU80 1094 aa11.33□□□□□ -0.6
USP54-204ENST00000422491 SCYL3Q8IZE3 742 aa11.33□□□□□ -0.6
USP54-204ENST00000422491 TUBGCP5Q96RT8 1024 aa11.33□□□□□ -0.6
USP54-204ENST00000422491 HSD17B14Q9BPX1 270 aa11.33□□□□□ -0.6
USP54-204ENST00000422491 FAM118BQ9BPY3 351 aa11.33□□□□□ -0.6
USP54-204ENST00000422491 SSU72Q9NP77 194 aaKnown RBP11.33□□□□□ -0.6
USP54-204ENST00000422491 PIK3CDO00329 1044 aa11.32□□□□□ -0.6
USP54-204ENST00000422491 ZBTB39O15060 712 aa11.32□□□□□ -0.6
USP54-204ENST00000422491 CREB3O43889 395 aa11.32□□□□□ -0.6
USP54-204ENST00000422491 LGR5O75473 907 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms