RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 DRAP1Q14919 205 aaPredicted RBP6.41□□□□□ -1.38
HMGB3-202ENST00000419110 PTPN14Q15678 1187 aa6.41□□□□□ -1.38
HMGB3-202ENST00000419110 DUOXA2Q1HG44 320 aa6.41□□□□□ -1.38
HMGB3-202ENST00000419110 SEZ6Q53EL9 994 aa6.41□□□□□ -1.38
HMGB3-202ENST00000419110 SMYD5Q6GMV2 418 aa6.41□□□□□ -1.38
HMGB3-202ENST00000419110 GJB7Q6PEY0 223 aa6.41□□□□□ -1.38
HMGB3-202ENST00000419110 FBXO46Q6PJ61 603 aaPredicted RBP6.41□□□□□ -1.38
HMGB3-202ENST00000419110 WDR59Q6PJI9 974 aa6.41□□□□□ -1.38
HMGB3-202ENST00000419110 C15orf39Q6ZRI6 1047 aa6.41□□□□□ -1.38
HMGB3-202ENST00000419110 ARHGEF19Q8IW93 802 aa6.41□□□□□ -1.38
HMGB3-202ENST00000419110 EFCAB13Q8IY85 973 aa6.41□□□□□ -1.38
HMGB3-202ENST00000419110 USP38Q8NB14 1042 aa6.41□□□□□ -1.38
HMGB3-202ENST00000419110 BEST2Q8NFU1 509 aa6.41□□□□□ -1.38
HMGB3-202ENST00000419110 SHC3Q92529 594 aa6.41□□□□□ -1.38
HMGB3-202ENST00000419110 TAF4BQ92750 862 aa6.41□□□□□ -1.38
HMGB3-202ENST00000419110 JAKMIP2Q96AA8 810 aa6.41□□□□□ -1.38
HMGB3-202ENST00000419110 DEFB118Q96PH6 123 aa6.41□□□□□ -1.38
HMGB3-202ENST00000419110 ALS2CR12Q96Q35 445 aa6.41□□□□□ -1.38
HMGB3-202ENST00000419110 TSPAN18Q96SJ8 248 aa6.41□□□□□ -1.38
HMGB3-202ENST00000419110 EIF3CQ99613 913 aaKnown RBP6.41□□□□□ -1.38
HMGB3-202ENST00000419110 APOL6Q9BWW8 343 aa6.41□□□□□ -1.38
HMGB3-202ENST00000419110 STK33Q9BYT3 514 aa6.41□□□□□ -1.38
HMGB3-202ENST00000419110 RNF208Q9H0X6 261 aa6.41□□□□□ -1.38
HMGB3-202ENST00000419110 NXF3Q9H4D5 531 aaKnown RBP6.41□□□□□ -1.38
HMGB3-202ENST00000419110 UBE2TQ9NPD8 197 aaPredicted RBP6.41□□□□□ -1.38
HMGB3-202ENST00000419110 SEPT11Q9NVA2 429 aaKnown RBP6.41□□□□□ -1.38
HMGB3-202ENST00000419110 TRMT1Q9NXH9 659 aaKnown RBP6.41□□□□□ -1.38
HMGB3-202ENST00000419110 AIPL1Q9NZN9 384 aa6.41□□□□□ -1.38
HMGB3-202ENST00000419110 ARHGAP20Q9P2F6 1191 aa6.41□□□□□ -1.38
HMGB3-202ENST00000419110 AJAP1Q9UKB5 411 aaPredicted RBP6.41□□□□□ -1.38
HMGB3-202ENST00000419110 ITGA11Q9UKX5 1188 aa6.41□□□□□ -1.38
HMGB3-202ENST00000419110 ADGRG1Q9Y653 693 aa6.41□□□□□ -1.38
HMGB3-202ENST00000419110 EPN1Q9Y6I3 576 aaPredicted RBP6.41□□□□□ -1.38
HMGB3-202ENST00000419110 KIAA0100Q14667 2235 aaKnown RBP6.4□□□□□ -1.38
HMGB3-202ENST00000419110 USP27XA6NNY8 438 aa6.4□□□□□ -1.38
HMGB3-202ENST00000419110 RNF225M0QZC1 329 aaPredicted RBP6.4□□□□□ -1.38
HMGB3-202ENST00000419110 ARVCFO00192 962 aa6.4□□□□□ -1.38
HMGB3-202ENST00000419110 GPR182O15218 404 aa6.4□□□□□ -1.38
HMGB3-202ENST00000419110 ASS1P00966 412 aaKnown RBP6.4□□□□□ -1.38
HMGB3-202ENST00000419110 KRT19P08727 400 aa6.4□□□□□ -1.38
HMGB3-202ENST00000419110 GHRP10912 638 aa6.4□□□□□ -1.38
HMGB3-202ENST00000419110 HSPA8P11142 646 aaKnown RBP6.4□□□□□ -1.38
HMGB3-202ENST00000419110 SKIP12755 728 aa6.4□□□□□ -1.38
HMGB3-202ENST00000419110 ZSCAN20P17040 1043 aaPredicted RBP6.4□□□□□ -1.38
HMGB3-202ENST00000419110 ATF7P17544 494 aaPredicted RBP6.4□□□□□ -1.38
HMGB3-202ENST00000419110 POLR2BP30876 1174 aaKnown RBP6.4□□□□□ -1.38
HMGB3-202ENST00000419110 ATICP31939 592 aa6.4□□□□□ -1.38
HMGB3-202ENST00000419110 WNT7BP56706 349 aa6.4□□□□□ -1.38
HMGB3-202ENST00000419110 BPIFB4P59827 614 aa6.4□□□□□ -1.38
HMGB3-202ENST00000419110 TNNC1P63316 161 aa6.4□□□□□ -1.38
HMGB3-202ENST00000419110 BFSP2Q13515 415 aa6.4□□□□□ -1.38
HMGB3-202ENST00000419110 BMS1Q14692 1282 aaKnown RBP6.4□□□□□ -1.38
HMGB3-202ENST00000419110 SLC18A3Q16572 532 aa6.4□□□□□ -1.38
HMGB3-202ENST00000419110 ZNF667Q5HYK9 610 aa6.4□□□□□ -1.38
HMGB3-202ENST00000419110 FBXO47Q5MNV8 452 aa6.4□□□□□ -1.38
HMGB3-202ENST00000419110 HGSNATQ68CP4 663 aa6.4□□□□□ -1.38
HMGB3-202ENST00000419110 JADE1Q6IE81 842 aa6.4□□□□□ -1.38
HMGB3-202ENST00000419110 SCARA5Q6ZMJ2 495 aa6.4□□□□□ -1.38
HMGB3-202ENST00000419110 TRAPPC11Q7Z392 1133 aa6.4□□□□□ -1.38
HMGB3-202ENST00000419110 GPIHBP1Q8IV16 184 aa6.4□□□□□ -1.38
HMGB3-202ENST00000419110 TTC39CQ8N584 583 aa6.4□□□□□ -1.38
HMGB3-202ENST00000419110 OR5B17Q8NGF7 314 aa6.4□□□□□ -1.38
HMGB3-202ENST00000419110 LMO3Q8TAP4 145 aa6.4□□□□□ -1.38
HMGB3-202ENST00000419110 TMEM40Q8WWA1 233 aa6.4□□□□□ -1.38
HMGB3-202ENST00000419110 DHX38Q92620 1227 aaKnown RBP6.4□□□□□ -1.38
HMGB3-202ENST00000419110 SEMA4DQ92854 862 aa6.4□□□□□ -1.38
HMGB3-202ENST00000419110 POP1Q99575 1024 aaKnown RBP6.4□□□□□ -1.38
HMGB3-202ENST00000419110 CHP1Q99653 195 aa6.4□□□□□ -1.38
HMGB3-202ENST00000419110 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP6.4□□□□□ -1.38
HMGB3-202ENST00000419110 EIF2AQ9BY44 585 aaKnown RBP6.4□□□□□ -1.38
HMGB3-202ENST00000419110 DNAI2Q9GZS0 605 aa6.4□□□□□ -1.38
HMGB3-202ENST00000419110 HAUS4Q9H6D7 363 aa6.4□□□□□ -1.38
HMGB3-202ENST00000419110 PLEKHA5Q9HAU0 1116 aa6.4□□□□□ -1.38
HMGB3-202ENST00000419110 ERVK-5Q9HDB9 667 aa6.4□□□□□ -1.38
HMGB3-202ENST00000419110 RRAGDQ9NQL2 400 aaPredicted RBP6.4□□□□□ -1.38
HMGB3-202ENST00000419110 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.4□□□□□ -1.38
HMGB3-202ENST00000419110 CHST12Q9NRB3 414 aa6.4□□□□□ -1.38
HMGB3-202ENST00000419110 TRMT13Q9NUP7 481 aaKnown RBP6.4□□□□□ -1.38
HMGB3-202ENST00000419110 CNTN3Q9P232 1028 aa6.4□□□□□ -1.38
HMGB3-202ENST00000419110 MYO1AQ9UBC5 1043 aa6.4□□□□□ -1.38
HMGB3-202ENST00000419110 UBQLN1Q9UMX0 589 aaKnown RBP6.4□□□□□ -1.38
HMGB3-202ENST00000419110 NOC2LQ9Y3T9 749 aaKnown RBP6.4□□□□□ -1.38
HMGB3-202ENST00000419110 SQORQ9Y6N5 450 aa6.4□□□□□ -1.38
HMGB3-202ENST00000419110 UMODL1Q5DID0 1318 aa6.4□□□□□ -1.39
HMGB3-202ENST00000419110 NLRC5Q86WI3 1866 aa6.4□□□□□ -1.39
HMGB3-202ENST00000419110 PTPRSQ13332 1948 aa6.4□□□□□ -1.39
HMGB3-202ENST00000419110 TET1Q8NFU7 2136 aa6.4□□□□□ -1.39
HMGB3-202ENST00000419110 TTC3P53804 2025 aa6.39□□□□□ -1.39
HMGB3-202ENST00000419110 LACTBL1A8MY62 500 aa6.39□□□□□ -1.39
HMGB3-202ENST00000419110 C3orf80F5H4A9 247 aa6.39□□□□□ -1.39
HMGB3-202ENST00000419110 RBAK-RBAKDNI3L0D1 243 aa6.39□□□□□ -1.39
HMGB3-202ENST00000419110 LCA5LO95447 670 aa6.39□□□□□ -1.39
HMGB3-202ENST00000419110 VNN1O95497 513 aa6.39□□□□□ -1.39
HMGB3-202ENST00000419110 MYCP01106 439 aaPredicted RBP6.39□□□□□ -1.39
HMGB3-202ENST00000419110 C4BPAP04003 597 aaKnown RBP6.39□□□□□ -1.39
HMGB3-202ENST00000419110 ITGB3P05106 788 aa6.39□□□□□ -1.39
HMGB3-202ENST00000419110 PLEKP08567 350 aaPredicted RBP6.39□□□□□ -1.39
HMGB3-202ENST00000419110 PNMA6AP0CW24 399 aaPredicted RBP6.39□□□□□ -1.39
HMGB3-202ENST00000419110 TNNT1P13805 278 aa6.39□□□□□ -1.39
HMGB3-202ENST00000419110 PNPLA4P41247 253 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms