RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 TRAPPC11Q7Z392 1133 aa9.05□□□□□ -0.96
SYNE1-211ENST00000413186 GABPB2Q8TAK5 448 aaPredicted RBP9.05□□□□□ -0.96
SYNE1-211ENST00000413186 SH3TC2Q8TF17 1288 aa9.05□□□□□ -0.96
SYNE1-211ENST00000413186 TSPAN18Q96SJ8 248 aa9.05□□□□□ -0.96
SYNE1-211ENST00000413186 PPP1R12CQ9BZL4 782 aa9.05□□□□□ -0.96
SYNE1-211ENST00000413186 NSRP1Q9H0G5 558 aaKnown RBP9.05□□□□□ -0.96
SYNE1-211ENST00000413186 ASNSD1Q9NWL6 643 aa9.05□□□□□ -0.96
SYNE1-211ENST00000413186 CCDC151A5D8V7 595 aa9.05□□□□□ -0.96
SYNE1-211ENST00000413186 MGEA5O60502 916 aa9.05□□□□□ -0.96
SYNE1-211ENST00000413186 B3GAT3O94766 335 aa9.05□□□□□ -0.96
SYNE1-211ENST00000413186 LMNB2Q03252 620 aa9.05□□□□□ -0.96
SYNE1-211ENST00000413186 KCNA10Q16322 511 aa9.05□□□□□ -0.96
SYNE1-211ENST00000413186 VCXQ9H320 206 aa9.05□□□□□ -0.96
SYNE1-211ENST00000413186 MED4Q9NPJ6 270 aa9.05□□□□□ -0.96
SYNE1-211ENST00000413186 CHST12Q9NRB3 414 aa9.05□□□□□ -0.96
SYNE1-211ENST00000413186 GIMAP4Q9NUV9 329 aa9.05□□□□□ -0.96
SYNE1-211ENST00000413186 INTS13Q9NVM9 706 aa9.05□□□□□ -0.96
SYNE1-211ENST00000413186 RNF186Q9NXI6 227 aa9.05□□□□□ -0.96
SYNE1-211ENST00000413186 KLK14Q9P0G3 267 aa9.05□□□□□ -0.96
SYNE1-211ENST00000413186 GFAPP14136 432 aa9.05□□□□□ -0.96
SYNE1-211ENST00000413186 TM4SF4P48230 202 aa9.05□□□□□ -0.96
SYNE1-211ENST00000413186 PSMC1P62191 440 aaKnown RBP9.05□□□□□ -0.96
SYNE1-211ENST00000413186 CUL2Q13617 745 aa9.05□□□□□ -0.96
SYNE1-211ENST00000413186 ERCC6LQ2NKX8 1250 aa9.05□□□□□ -0.96
SYNE1-211ENST00000413186 TRIM65Q6PJ69 517 aa9.05□□□□□ -0.96
SYNE1-211ENST00000413186 PBKQ96KB5 322 aa9.05□□□□□ -0.96
SYNE1-211ENST00000413186 PSMB7Q99436 277 aa9.05□□□□□ -0.96
SYNE1-211ENST00000413186 C11orf70Q9BRQ4 267 aa9.05□□□□□ -0.96
SYNE1-211ENST00000413186 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.05□□□□□ -0.96
SYNE1-211ENST00000413186 ST6GALNAC4Q9H4F1 302 aa9.05□□□□□ -0.96
SYNE1-211ENST00000413186 PLEKHA5Q9HAU0 1116 aa9.05□□□□□ -0.96
SYNE1-211ENST00000413186 FHOD1Q9Y613 1164 aa9.05□□□□□ -0.96
SYNE1-211ENST00000413186 GOLGA6CA6NDK9 693 aa9.05□□□□□ -0.96
SYNE1-211ENST00000413186 GOLGA6BA6NDN3 693 aa9.05□□□□□ -0.96
SYNE1-211ENST00000413186 H7C4K7 107 aa9.05□□□□□ -0.96
SYNE1-211ENST00000413186 GOLGA6DP0CG33 693 aa9.05□□□□□ -0.96
SYNE1-211ENST00000413186 SDC4P31431 198 aa9.05□□□□□ -0.96
SYNE1-211ENST00000413186 ARHGAP1Q07960 439 aa9.05□□□□□ -0.96
SYNE1-211ENST00000413186 IKBKEQ14164 716 aa9.05□□□□□ -0.96
SYNE1-211ENST00000413186 C17orf99Q6UX52 265 aa9.05□□□□□ -0.96
SYNE1-211ENST00000413186 SV2AQ7L0J3 742 aa9.05□□□□□ -0.96
SYNE1-211ENST00000413186 TMEM199Q8N511 208 aa9.05□□□□□ -0.96
SYNE1-211ENST00000413186 CCDC89Q8N998 374 aa9.05□□□□□ -0.96
SYNE1-211ENST00000413186 NPLOC4Q8TAT6 608 aa9.05□□□□□ -0.96
SYNE1-211ENST00000413186 MTMR12Q9C0I1 747 aa9.05□□□□□ -0.96
SYNE1-211ENST00000413186 GOLGA6AQ9NYA3 693 aa9.05□□□□□ -0.96
SYNE1-211ENST00000413186 ASIC3Q9UHC3 531 aa9.05□□□□□ -0.96
SYNE1-211ENST00000413186 SYNJ2BP-COX16A0A087WUM0 186 aa9.04□□□□□ -0.96
SYNE1-211ENST00000413186 EVI5O60447 810 aa9.04□□□□□ -0.96
SYNE1-211ENST00000413186 RTN2O75298 545 aa9.04□□□□□ -0.96
SYNE1-211ENST00000413186 FTLP02792 175 aaPredicted RBP9.04□□□□□ -0.96
SYNE1-211ENST00000413186 AMHP03971 560 aa9.04□□□□□ -0.96
SYNE1-211ENST00000413186 CXCL8P10145 99 aa9.04□□□□□ -0.96
SYNE1-211ENST00000413186 PSMA2P25787 234 aa9.04□□□□□ -0.96
SYNE1-211ENST00000413186 ADORA2BP29275 332 aa9.04□□□□□ -0.96
SYNE1-211ENST00000413186 GTF2F1P35269 517 aaKnown RBP eCLIP9.04□□□□□ -0.96
SYNE1-211ENST00000413186 GNL1P36915 607 aaPredicted RBP9.04□□□□□ -0.96
SYNE1-211ENST00000413186 PTPN11Q06124 597 aaPredicted RBP9.04□□□□□ -0.96
SYNE1-211ENST00000413186 FAM117BQ6P1L5 589 aa9.04□□□□□ -0.96
SYNE1-211ENST00000413186 MAMDC4Q6UXC1 1216 aa9.04□□□□□ -0.96
SYNE1-211ENST00000413186 CTU1Q7Z7A3 348 aaKnown RBP9.04□□□□□ -0.96
SYNE1-211ENST00000413186 GLYCTKQ8IVS8 523 aa9.04□□□□□ -0.96
SYNE1-211ENST00000413186 BBS5Q8N3I7 341 aa9.04□□□□□ -0.96
SYNE1-211ENST00000413186 RSAD1Q9HA92 442 aa9.04□□□□□ -0.96
SYNE1-211ENST00000413186 HOMER3Q9NSC5 361 aa9.04□□□□□ -0.96
SYNE1-211ENST00000413186 COX16Q9P0S2 106 aa9.04□□□□□ -0.96
SYNE1-211ENST00000413186 PRG3Q9Y2Y8 225 aaPredicted RBP9.04□□□□□ -0.96
SYNE1-211ENST00000413186 KRIT1O00522 736 aa9.04□□□□□ -0.96
SYNE1-211ENST00000413186 ACADSBP45954 432 aa9.04□□□□□ -0.96
SYNE1-211ENST00000413186 SEZ6Q53EL9 994 aa9.04□□□□□ -0.96
SYNE1-211ENST00000413186 NAA35Q5VZE5 725 aa9.04□□□□□ -0.96
SYNE1-211ENST00000413186 C12orf56Q8IXR9 622 aa9.04□□□□□ -0.96
SYNE1-211ENST00000413186 SLC35F6Q8N357 371 aa9.04□□□□□ -0.96
SYNE1-211ENST00000413186 SPATA20Q8TB22 786 aa9.04□□□□□ -0.96
SYNE1-211ENST00000413186 RSAD2Q8WXG1 361 aa9.04□□□□□ -0.96
SYNE1-211ENST00000413186 MS4A4AQ96JQ5 239 aa9.04□□□□□ -0.96
SYNE1-211ENST00000413186 DUSP9Q99956 384 aaKnown RBP9.04□□□□□ -0.96
SYNE1-211ENST00000413186 SNTG2Q9NY99 539 aa9.04□□□□□ -0.96
SYNE1-211ENST00000413186 TNS1Q9HBL0 1735 aaKnown RBP9.04□□□□□ -0.96
SYNE1-211ENST00000413186 OPLAHO14841 1288 aa9.04□□□□□ -0.96
SYNE1-211ENST00000413186 ZBTB24O43167 697 aaPredicted RBP9.04□□□□□ -0.96
SYNE1-211ENST00000413186 LGR5O75473 907 aa9.04□□□□□ -0.96
SYNE1-211ENST00000413186 CSDE1O75534 798 aaKnown RBP9.04□□□□□ -0.96
SYNE1-211ENST00000413186 ZNF18P17022 549 aa9.04□□□□□ -0.96
SYNE1-211ENST00000413186 PKN2Q16513 984 aaKnown RBP9.04□□□□□ -0.96
SYNE1-211ENST00000413186 SLC18A3Q16572 532 aa9.04□□□□□ -0.96
SYNE1-211ENST00000413186 ECM1Q16610 540 aa9.04□□□□□ -0.96
SYNE1-211ENST00000413186 ARSHQ5FYA8 562 aa9.04□□□□□ -0.96
SYNE1-211ENST00000413186 GLRA4Q5JXX5 417 aa9.04□□□□□ -0.96
SYNE1-211ENST00000413186 DEFB128Q7Z7B8 93 aa9.04□□□□□ -0.96
SYNE1-211ENST00000413186 TADA2BQ86TJ2 420 aa9.04□□□□□ -0.96
SYNE1-211ENST00000413186 PASD1Q8IV76 773 aa9.04□□□□□ -0.96
SYNE1-211ENST00000413186 PARD3BQ8TEW8 1205 aa9.04□□□□□ -0.96
SYNE1-211ENST00000413186 C18orf8Q96DM3 657 aa9.04□□□□□ -0.96
SYNE1-211ENST00000413186 YME1L1Q96TA2 773 aa9.04□□□□□ -0.96
SYNE1-211ENST00000413186 ADAM2Q99965 735 aa9.04□□□□□ -0.96
SYNE1-211ENST00000413186 NGRNQ9NPE2 291 aaKnown RBP9.04□□□□□ -0.96
SYNE1-211ENST00000413186 ANAPC7Q9UJX3 599 aa9.04□□□□□ -0.96
SYNE1-211ENST00000413186 ZNF862O60290 1169 aa9.04□□□□□ -0.96
SYNE1-211ENST00000413186 EFCAB14O75071 495 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms