RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 DGKIO75912 1065 aa14.46□□□□□ -0.09
LIMS1-204ENST00000409441 IL18RAPO95256 599 aa14.46□□□□□ -0.09
LIMS1-204ENST00000409441 ATP2A2P16615 1042 aaKnown RBP14.46□□□□□ -0.09
LIMS1-204ENST00000409441 WNT7BP56706 349 aa14.46□□□□□ -0.09
LIMS1-204ENST00000409441 ERCC6LQ2NKX8 1250 aa14.46□□□□□ -0.09
LIMS1-204ENST00000409441 XKR4Q5GH76 650 aa14.46□□□□□ -0.09
LIMS1-204ENST00000409441 INTS8Q75QN2 995 aaKnown RBP14.46□□□□□ -0.09
LIMS1-204ENST00000409441 FRMD5Q7Z6J6 570 aa14.46□□□□□ -0.09
LIMS1-204ENST00000409441 CD302Q8IX05 232 aa14.46□□□□□ -0.09
LIMS1-204ENST00000409441 ABI1Q8IZP0 508 aa14.46□□□□□ -0.09
LIMS1-204ENST00000409441 SLC35F6Q8N357 371 aa14.46□□□□□ -0.09
LIMS1-204ENST00000409441 CEP112Q8N8E3 955 aa14.46□□□□□ -0.09
LIMS1-204ENST00000409441 SNX27Q96L92 541 aa14.46□□□□□ -0.09
LIMS1-204ENST00000409441 SLC9A7Q96T83 725 aa14.46□□□□□ -0.09
LIMS1-204ENST00000409441 IRX2Q9BZI1 471 aaPredicted RBP14.46□□□□□ -0.09
LIMS1-204ENST00000409441 ASB7Q9H672 318 aa14.46□□□□□ -0.09
LIMS1-204ENST00000409441 MMRN2Q9H8L6 949 aa14.46□□□□□ -0.09
LIMS1-204ENST00000409441 MIOSQ9NXC5 875 aa14.46□□□□□ -0.09
LIMS1-204ENST00000409441 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.46□□□□□ -0.09
LIMS1-204ENST00000409441 ARMCX3Q9UH62 379 aaPredicted RBP14.46□□□□□ -0.09
LIMS1-204ENST00000409441 CDC23Q9UJX2 597 aa14.46□□□□□ -0.09
LIMS1-204ENST00000409441 INPP5FQ9Y2H2 1132 aa14.46□□□□□ -0.09
LIMS1-204ENST00000409441 V9GYY5 206 aaPredicted RBP14.46□□□□□ -0.09
LIMS1-204ENST00000409441 TTC3P53804 2025 aa14.45□□□□□ -0.1
LIMS1-204ENST00000409441 A0A0U1RQJ8 604 aa14.45□□□□□ -0.1
LIMS1-204ENST00000409441 KRT86O43790 486 aa14.45□□□□□ -0.1
LIMS1-204ENST00000409441 KRT13P13646 458 aa14.45□□□□□ -0.1
LIMS1-204ENST00000409441 H2AFXP16104 143 aaPredicted RBP14.45□□□□□ -0.1
LIMS1-204ENST00000409441 GATMP50440 423 aa14.45□□□□□ -0.1
LIMS1-204ENST00000409441 VAMP7P51809 220 aa14.45□□□□□ -0.1
LIMS1-204ENST00000409441 PSMD6Q15008 389 aa14.45□□□□□ -0.1
LIMS1-204ENST00000409441 SURF1Q15526 300 aa14.45□□□□□ -0.1
LIMS1-204ENST00000409441 NOMO2Q5JPE7 1267 aa14.45□□□□□ -0.1
LIMS1-204ENST00000409441 KIAA1328Q86T90 577 aa14.45□□□□□ -0.1
LIMS1-204ENST00000409441 HERC6Q8IVU3 1022 aa14.45□□□□□ -0.1
LIMS1-204ENST00000409441 PLEKHO2Q8TD55 490 aa14.45□□□□□ -0.1
LIMS1-204ENST00000409441 PARD3BQ8TEW8 1205 aa14.45□□□□□ -0.1
LIMS1-204ENST00000409441 ATRIPQ8WXE1 791 aa14.45□□□□□ -0.1
LIMS1-204ENST00000409441 SYN2Q92777 582 aaPredicted RBP14.45□□□□□ -0.1
LIMS1-204ENST00000409441 ZMAT2Q96NC0 199 aaKnown RBP14.45□□□□□ -0.1
LIMS1-204ENST00000409441 CASD1Q96PB1 797 aa14.45□□□□□ -0.1
LIMS1-204ENST00000409441 POP1Q99575 1024 aaKnown RBP14.45□□□□□ -0.1
LIMS1-204ENST00000409441 ZBED2Q9BTP6 218 aa14.45□□□□□ -0.1
LIMS1-204ENST00000409441 TSGA10Q9BZW7 698 aa14.45□□□□□ -0.1
LIMS1-204ENST00000409441 TMEM117Q9H0C3 514 aa14.45□□□□□ -0.1
LIMS1-204ENST00000409441 METTL14Q9HCE5 456 aaKnown RBP14.45□□□□□ -0.1
LIMS1-204ENST00000409441 CEP72Q9P209 647 aa14.45□□□□□ -0.1
LIMS1-204ENST00000409441 CNTN3Q9P232 1028 aa14.45□□□□□ -0.1
LIMS1-204ENST00000409441 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.45□□□□□ -0.1
LIMS1-204ENST00000409441 TNRC18O15417 2968 aaPredicted RBP14.45□□□□□ -0.1
LIMS1-204ENST00000409441 TBKBP1A7MCY6 615 aa14.44□□□□□ -0.1
LIMS1-204ENST00000409441 PTGESO14684 152 aa14.44□□□□□ -0.1
LIMS1-204ENST00000409441 INPPL1O15357 1258 aa14.44□□□□□ -0.1
LIMS1-204ENST00000409441 GJB5O95377 273 aa14.44□□□□□ -0.1
LIMS1-204ENST00000409441 LCA5LO95447 670 aa14.44□□□□□ -0.1
LIMS1-204ENST00000409441 POMCP01189 267 aa14.44□□□□□ -0.1
LIMS1-204ENST00000409441 DLATP10515 647 aaKnown RBP14.44□□□□□ -0.1
LIMS1-204ENST00000409441 KCNE1P15382 129 aa14.44□□□□□ -0.1
LIMS1-204ENST00000409441 SCNN1GP51170 649 aa14.44□□□□□ -0.1
LIMS1-204ENST00000409441 DLG4P78352 724 aa14.44□□□□□ -0.1
LIMS1-204ENST00000409441 KCNMA1Q12791 1236 aa14.44□□□□□ -0.1
LIMS1-204ENST00000409441 GLRA4Q5JXX5 417 aa14.44□□□□□ -0.1
LIMS1-204ENST00000409441 PDXDC1Q6P996 788 aa14.44□□□□□ -0.1
LIMS1-204ENST00000409441 RSRC2Q7L4I2 434 aaKnown RBP14.44□□□□□ -0.1
LIMS1-204ENST00000409441 TXLNBQ8N3L3 684 aa14.44□□□□□ -0.1
LIMS1-204ENST00000409441 LRRN4CLQ8ND94 238 aa14.44□□□□□ -0.1
LIMS1-204ENST00000409441 TMC2Q8TDI7 906 aa14.44□□□□□ -0.1
LIMS1-204ENST00000409441 BAP1Q92560 729 aa14.44□□□□□ -0.1
LIMS1-204ENST00000409441 GOLGA1Q92805 767 aa14.44□□□□□ -0.1
LIMS1-204ENST00000409441 JAKMIP2Q96AA8 810 aa14.44□□□□□ -0.1
LIMS1-204ENST00000409441 CCDC42Q96M95 316 aa14.44□□□□□ -0.1
LIMS1-204ENST00000409441 FNBP1Q96RU3 617 aa14.44□□□□□ -0.1
LIMS1-204ENST00000409441 RPS6KC1Q96S38 1066 aa14.44□□□□□ -0.1
LIMS1-204ENST00000409441 ARGLU1Q9NWB6 273 aaPredicted RBP14.44□□□□□ -0.1
LIMS1-204ENST00000409441 KANSL3Q9P2N6 904 aa14.44□□□□□ -0.1
LIMS1-204ENST00000409441 THP07101 528 aa14.44□□□□□ -0.1
LIMS1-204ENST00000409441 TNNI1P19237 187 aa14.44□□□□□ -0.1
LIMS1-204ENST00000409441 VAV2P52735 878 aa14.44□□□□□ -0.1
LIMS1-204ENST00000409441 MCCD1P59942 119 aaPredicted RBP14.44□□□□□ -0.1
LIMS1-204ENST00000409441 BFSP1Q12934 665 aa14.44□□□□□ -0.1
LIMS1-204ENST00000409441 SPA17Q15506 151 aa14.44□□□□□ -0.1
LIMS1-204ENST00000409441 ZBTB6Q15916 424 aa14.44□□□□□ -0.1
LIMS1-204ENST00000409441 WHAMMP3Q1A5X7 153 aa14.44□□□□□ -0.1
LIMS1-204ENST00000409441 CCDC122Q5T0U0 273 aa14.44□□□□□ -0.1
LIMS1-204ENST00000409441 JADE1Q6IE81 842 aa14.44□□□□□ -0.1
LIMS1-204ENST00000409441 CACNA2D4Q7Z3S7 1137 aa14.44□□□□□ -0.1
LIMS1-204ENST00000409441 USP37Q86T82 979 aa14.44□□□□□ -0.1
LIMS1-204ENST00000409441 GPR161Q8N6U8 529 aaKnown RBP14.44□□□□□ -0.1
LIMS1-204ENST00000409441 URGCPQ8TCY9 931 aa14.44□□□□□ -0.1
LIMS1-204ENST00000409441 RABGGTAQ92696 567 aa14.44□□□□□ -0.1
LIMS1-204ENST00000409441 ZNF689Q96CS4 500 aaPredicted RBP14.44□□□□□ -0.1
LIMS1-204ENST00000409441 KIF12Q96FN5 646 aa14.44□□□□□ -0.1
LIMS1-204ENST00000409441 TSPAN18Q96SJ8 248 aa14.44□□□□□ -0.1
LIMS1-204ENST00000409441 FAM207AQ9NSI2 230 aaPredicted RBP14.44□□□□□ -0.1
LIMS1-204ENST00000409441 MICAL3Q7RTP6 2002 aa14.44□□□□□ -0.1
LIMS1-204ENST00000409441 PDE4DIPQ5VU43 2346 aa14.43□□□□□ -0.1
LIMS1-204ENST00000409441 SSU72P8A0A1W2PR75 194 aa14.43□□□□□ -0.1
LIMS1-204ENST00000409441 NFICP08651 508 aa14.43□□□□□ -0.1
LIMS1-204ENST00000409441 CLDN10P78369 228 aa14.43□□□□□ -0.1
LIMS1-204ENST00000409441 TFAMQ00059 246 aaKnown RBP14.43□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms