RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 NAGPAQ9UK23 515 aa9.65□□□□□ -0.86
LIG4-202ENST00000405925 CASTOR2A6NHX0 329 aa9.65□□□□□ -0.87
LIG4-202ENST00000405925 M0R2N6 131 aa9.65□□□□□ -0.87
LIG4-202ENST00000405925 SGPL1O95470 568 aa9.65□□□□□ -0.87
LIG4-202ENST00000405925 POMCP01189 267 aa9.65□□□□□ -0.87
LIG4-202ENST00000405925 ITIH3Q06033 890 aa9.65□□□□□ -0.87
LIG4-202ENST00000405925 TFDP2Q14188 446 aa9.65□□□□□ -0.87
LIG4-202ENST00000405925 ACOT1Q86TX2 421 aa9.65□□□□□ -0.87
LIG4-202ENST00000405925 IFNL1Q8IU54 200 aa9.65□□□□□ -0.87
LIG4-202ENST00000405925 C1orf131Q8NDD1 294 aaKnown RBP9.65□□□□□ -0.87
LIG4-202ENST00000405925 LENG9Q96B70 501 aa9.65□□□□□ -0.87
LIG4-202ENST00000405925 NCAPGQ9BPX3 1015 aa9.65□□□□□ -0.87
LIG4-202ENST00000405925 FGFBP2Q9BYJ0 223 aa9.65□□□□□ -0.87
LIG4-202ENST00000405925 SENP6Q9GZR1 1112 aaPredicted RBP9.65□□□□□ -0.87
LIG4-202ENST00000405925 DHX35Q9H5Z1 703 aaKnown RBP9.65□□□□□ -0.87
LIG4-202ENST00000405925 ASTN1O14525 1302 aa9.64□□□□□ -0.87
LIG4-202ENST00000405925 CREB3O43889 395 aa9.64□□□□□ -0.87
LIG4-202ENST00000405925 ZC3H11AO75152 810 aaKnown RBP eCLIP9.64□□□□□ -0.87
LIG4-202ENST00000405925 TJP3O95049 919 aa9.64□□□□□ -0.87
LIG4-202ENST00000405925 KRT7P08729 469 aa9.64□□□□□ -0.87
LIG4-202ENST00000405925 RAG1P15918 1043 aa9.64□□□□□ -0.87
LIG4-202ENST00000405925 VEPH1Q14D04 833 aa9.64□□□□□ -0.87
LIG4-202ENST00000405925 CEP85LQ5SZL2 805 aa9.64□□□□□ -0.87
LIG4-202ENST00000405925 RNF187Q5TA31 235 aaPredicted RBP9.64□□□□□ -0.87
LIG4-202ENST00000405925 BTBD8Q5XKL5 378 aa9.64□□□□□ -0.87
LIG4-202ENST00000405925 BBOF1Q8ND07 529 aa9.64□□□□□ -0.87
LIG4-202ENST00000405925 SYN2Q92777 582 aaPredicted RBP9.64□□□□□ -0.87
LIG4-202ENST00000405925 UVRAGQ9P2Y5 699 aa9.64□□□□□ -0.87
LIG4-202ENST00000405925 HES2Q9Y543 173 aa9.64□□□□□ -0.87
LIG4-202ENST00000405925 TRPV2Q9Y5S1 764 aa9.64□□□□□ -0.87
LIG4-202ENST00000405925 GOLGA6L7A0A1B0GV03 622 aa9.64□□□□□ -0.87
LIG4-202ENST00000405925 GTPBP10A4D1E9 387 aaKnown RBP9.64□□□□□ -0.87
LIG4-202ENST00000405925 GOLGA6CA6NDK9 693 aa9.64□□□□□ -0.87
LIG4-202ENST00000405925 F8VZ95 297 aa9.64□□□□□ -0.87
LIG4-202ENST00000405925 CCDC188H7C350 402 aa9.64□□□□□ -0.87
LIG4-202ENST00000405925 SART1O43290 800 aaKnown RBP9.64□□□□□ -0.87
LIG4-202ENST00000405925 GOLGA6DP0CG33 693 aa9.64□□□□□ -0.87
LIG4-202ENST00000405925 ICAM3P32942 547 aa9.64□□□□□ -0.87
LIG4-202ENST00000405925 DR1Q01658 176 aa9.64□□□□□ -0.87
LIG4-202ENST00000405925 CBWD6Q4V339 395 aa9.64□□□□□ -0.87
LIG4-202ENST00000405925 CBWD3Q5JTY5 395 aa9.64□□□□□ -0.87
LIG4-202ENST00000405925 CBWD5Q5RIA9 395 aa9.64□□□□□ -0.87
LIG4-202ENST00000405925 TMEM169Q96HH4 297 aa9.64□□□□□ -0.87
LIG4-202ENST00000405925 RUNDC3BQ96NL0 473 aa9.64□□□□□ -0.87
LIG4-202ENST00000405925 MCEEQ96PE7 176 aa9.64□□□□□ -0.87
LIG4-202ENST00000405925 DNAJC7Q99615 494 aa9.64□□□□□ -0.87
LIG4-202ENST00000405925 DDX47Q9H0S4 455 aaKnown RBP9.64□□□□□ -0.87
LIG4-202ENST00000405925 CISHQ9NSE2 258 aa9.64□□□□□ -0.87
LIG4-202ENST00000405925 KLHL11Q9NVR0 708 aa9.64□□□□□ -0.87
LIG4-202ENST00000405925 GOLGA6AQ9NYA3 693 aa9.64□□□□□ -0.87
LIG4-202ENST00000405925 CHD4Q14839 1912 aa9.64□□□□□ -0.87
LIG4-202ENST00000405925 PI4K2BG5E9Z4 385 aa9.64□□□□□ -0.87
LIG4-202ENST00000405925 C2CD2LO14523 706 aa9.64□□□□□ -0.87
LIG4-202ENST00000405925 RECQL4O94761 1208 aa9.64□□□□□ -0.87
LIG4-202ENST00000405925 CAPN2P17655 700 aa9.64□□□□□ -0.87
LIG4-202ENST00000405925 ATP5DP30049 168 aa9.64□□□□□ -0.87
LIG4-202ENST00000405925 RAP1GAPP47736 663 aa9.64□□□□□ -0.87
LIG4-202ENST00000405925 CDH6P55285 790 aa9.64□□□□□ -0.87
LIG4-202ENST00000405925 ABRAQ8N0Z2 381 aa9.64□□□□□ -0.87
LIG4-202ENST00000405925 BBS5Q8N3I7 341 aa9.64□□□□□ -0.87
LIG4-202ENST00000405925 GABPB2Q8TAK5 448 aaPredicted RBP9.64□□□□□ -0.87
LIG4-202ENST00000405925 SPATA20Q8TB22 786 aa9.64□□□□□ -0.87
LIG4-202ENST00000405925 HOMER3Q9NSC5 361 aa9.64□□□□□ -0.87
LIG4-202ENST00000405925 WDR35Q9P2L0 1181 aa9.64□□□□□ -0.87
LIG4-202ENST00000405925 CDY2AQ9Y6F7 541 aa9.64□□□□□ -0.87
LIG4-202ENST00000405925 NRAPQ86VF7 1730 aa9.63□□□□□ -0.87
LIG4-202ENST00000405925 ZBTB22O15209 634 aa9.63□□□□□ -0.87
LIG4-202ENST00000405925 B4GALT5O43286 388 aa9.63□□□□□ -0.87
LIG4-202ENST00000405925 BUB1BO60566 1050 aaPredicted RBP9.63□□□□□ -0.87
LIG4-202ENST00000405925 AOC2O75106 756 aa9.63□□□□□ -0.87
LIG4-202ENST00000405925 HMGCRP04035 888 aa9.63□□□□□ -0.87
LIG4-202ENST00000405925 MMP3P08254 477 aa9.63□□□□□ -0.87
LIG4-202ENST00000405925 CYP11B1P15538 503 aa9.63□□□□□ -0.87
LIG4-202ENST00000405925 GRK4P32298 578 aa9.63□□□□□ -0.87
LIG4-202ENST00000405925 ALDH7A1P49419 539 aaKnown RBP9.63□□□□□ -0.87
LIG4-202ENST00000405925 YWHAGP61981 247 aaKnown RBP eCLIP9.63□□□□□ -0.87
LIG4-202ENST00000405925 PPP3CAQ08209 521 aa9.63□□□□□ -0.87
LIG4-202ENST00000405925 GOLGA7BQ2TAP0 167 aa9.63□□□□□ -0.87
LIG4-202ENST00000405925 FBXO47Q5MNV8 452 aa9.63□□□□□ -0.87
LIG4-202ENST00000405925 EEF1DP3Q658K8 133 aa9.63□□□□□ -0.87
LIG4-202ENST00000405925 MTHFD1LQ6UB35 978 aa9.63□□□□□ -0.87
LIG4-202ENST00000405925 ARHGEF18Q6ZSZ5 1173 aa9.63□□□□□ -0.87
LIG4-202ENST00000405925 ZBTB10Q96DT7 871 aa9.63□□□□□ -0.87
LIG4-202ENST00000405925 ZBED3Q96IU2 234 aaPredicted RBP9.63□□□□□ -0.87
LIG4-202ENST00000405925 ASB7Q9H672 318 aa9.63□□□□□ -0.87
LIG4-202ENST00000405925 TMEM134Q9H6X4 195 aa9.63□□□□□ -0.87
LIG4-202ENST00000405925 FAM114A2Q9NRY5 505 aa9.63□□□□□ -0.87
LIG4-202ENST00000405925 ARHGAP20Q9P2F6 1191 aa9.63□□□□□ -0.87
LIG4-202ENST00000405925 LACTBL1A8MY62 500 aa9.63□□□□□ -0.87
LIG4-202ENST00000405925 CYB561D2O14569 222 aa9.63□□□□□ -0.87
LIG4-202ENST00000405925 TGFB1I1O43294 461 aa9.63□□□□□ -0.87
LIG4-202ENST00000405925 MMEP08473 750 aa9.63□□□□□ -0.87
LIG4-202ENST00000405925 CDR2Q01850 454 aa9.63□□□□□ -0.87
LIG4-202ENST00000405925 PRKCZQ05513 592 aa9.63□□□□□ -0.87
LIG4-202ENST00000405925 PSMD6Q15008 389 aa9.63□□□□□ -0.87
LIG4-202ENST00000405925 MGAT5BQ3V5L5 792 aa9.63□□□□□ -0.87
LIG4-202ENST00000405925 CYP4A22Q5TCH4 519 aa9.63□□□□□ -0.87
LIG4-202ENST00000405925 CEP120Q8N960 986 aa9.63□□□□□ -0.87
LIG4-202ENST00000405925 SH3TC2Q8TF17 1288 aa9.63□□□□□ -0.87
LIG4-202ENST00000405925 DEFB118Q96PH6 123 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 98.7 ms