RNA–Protein interactions for RNA: ENST00000403408.2

SPTLC1P3-201, Transcript of serine palmitoyltransferase long chain base subunit 1 pseudogene 3, humanhuman

BASIC

Gene SPTLC1P3, Length 259 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1P3-201ENST00000403408 PSMC3P17980 439 aa13.11□□□□□ -0.31
SPTLC1P3-201ENST00000403408 SHC2P98077 582 aa13.11□□□□□ -0.31
SPTLC1P3-201ENST00000403408 SCRN1Q12765 414 aa13.11□□□□□ -0.31
SPTLC1P3-201ENST00000403408 COL9A2Q14055 689 aaPredicted RBP13.11□□□□□ -0.31
SPTLC1P3-201ENST00000403408 ANKS3Q6ZW76 656 aa13.11□□□□□ -0.31
SPTLC1P3-201ENST00000403408 RUFY3Q7L099 469 aa13.11□□□□□ -0.31
SPTLC1P3-201ENST00000403408 FAM177A1Q8N128 213 aaPredicted RBP13.11□□□□□ -0.31
SPTLC1P3-201ENST00000403408 SPEM1Q8N4L4 309 aa13.11□□□□□ -0.31
SPTLC1P3-201ENST00000403408 SHKBP1Q8TBC3 707 aa13.11□□□□□ -0.31
SPTLC1P3-201ENST00000403408 IRF7Q92985 503 aa13.11□□□□□ -0.31
SPTLC1P3-201ENST00000403408 ZNF274Q96GC6 653 aaPredicted RBP13.11□□□□□ -0.31
SPTLC1P3-201ENST00000403408 IER2Q9BTL4 223 aa13.11□□□□□ -0.31
SPTLC1P3-201ENST00000403408 TRPV4Q9HBA0 871 aa13.11□□□□□ -0.31
SPTLC1P3-201ENST00000403408 CYP4F11Q9HBI6 524 aa13.11□□□□□ -0.31
SPTLC1P3-201ENST00000403408 POLR3BQ9NW08 1133 aaPredicted RBP13.11□□□□□ -0.31
SPTLC1P3-201ENST00000403408 FBXL5Q9UKA1 691 aa13.11□□□□□ -0.31
SPTLC1P3-201ENST00000403408 ABCA7Q8IZY2 2146 aa13.1□□□□□ -0.31
SPTLC1P3-201ENST00000403408 SMIM28A0A1B0GU29 152 aa13.1□□□□□ -0.31
SPTLC1P3-201ENST00000403408 SLC38A8A6NNN8 435 aa13.1□□□□□ -0.31
SPTLC1P3-201ENST00000403408 ACKR2O00590 384 aa13.1□□□□□ -0.31
SPTLC1P3-201ENST00000403408 AXIN1O15169 862 aa13.1□□□□□ -0.31
SPTLC1P3-201ENST00000403408 MED24O75448 989 aa13.1□□□□□ -0.31
SPTLC1P3-201ENST00000403408 LRG1P02750 347 aa13.1□□□□□ -0.31
SPTLC1P3-201ENST00000403408 LIG1P18858 919 aa13.1□□□□□ -0.31
SPTLC1P3-201ENST00000403408 EPHA5P54756 1037 aa13.1□□□□□ -0.31
SPTLC1P3-201ENST00000403408 ARPP19P56211 112 aa13.1□□□□□ -0.31
SPTLC1P3-201ENST00000403408 PRPF4BQ13523 1007 aaKnown RBP13.1□□□□□ -0.31
SPTLC1P3-201ENST00000403408 TEAD2Q15562 447 aa13.1□□□□□ -0.31
SPTLC1P3-201ENST00000403408 XKR4Q5GH76 650 aa13.1□□□□□ -0.31
SPTLC1P3-201ENST00000403408 STXBP5Q5T5C0 1151 aa13.1□□□□□ -0.31
SPTLC1P3-201ENST00000403408 ALKAL1Q6UXT8 129 aa13.1□□□□□ -0.31
SPTLC1P3-201ENST00000403408 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.1□□□□□ -0.31
SPTLC1P3-201ENST00000403408 LONP2Q86WA8 852 aa13.1□□□□□ -0.31
SPTLC1P3-201ENST00000403408 MFSD6LQ8IWD5 586 aa13.1□□□□□ -0.31
SPTLC1P3-201ENST00000403408 TTC8Q8TAM2 541 aa13.1□□□□□ -0.31
SPTLC1P3-201ENST00000403408 ZSCAN18Q8TBC5 510 aaPredicted RBP13.1□□□□□ -0.31
SPTLC1P3-201ENST00000403408 MTMR9Q96QG7 549 aa13.1□□□□□ -0.31
SPTLC1P3-201ENST00000403408 MKNK1Q9BUB5 465 aa13.1□□□□□ -0.31
SPTLC1P3-201ENST00000403408 TMEM60Q9H2L4 133 aa13.1□□□□□ -0.31
SPTLC1P3-201ENST00000403408 CRISPLD1Q9H336 500 aa13.1□□□□□ -0.31
SPTLC1P3-201ENST00000403408 TTC12Q9H892 705 aaPredicted RBP13.1□□□□□ -0.31
SPTLC1P3-201ENST00000403408 IGSF10Q6WRI0 2623 aa13.09□□□□□ -0.31
SPTLC1P3-201ENST00000403408 HAX1O00165 279 aa13.09□□□□□ -0.31
SPTLC1P3-201ENST00000403408 CITO14578 2027 aa13.09□□□□□ -0.31
SPTLC1P3-201ENST00000403408 PRRG1O14668 218 aa13.09□□□□□ -0.31
SPTLC1P3-201ENST00000403408 CPLX1O14810 134 aa13.09□□□□□ -0.31
SPTLC1P3-201ENST00000403408 EXTL3O43909 919 aa13.09□□□□□ -0.31
SPTLC1P3-201ENST00000403408 MARCH6O60337 910 aa13.09□□□□□ -0.31
SPTLC1P3-201ENST00000403408 FDPSP14324 419 aaKnown RBP13.09□□□□□ -0.31
SPTLC1P3-201ENST00000403408 PXNP49023 591 aaPredicted RBP13.09□□□□□ -0.31
SPTLC1P3-201ENST00000403408 LIMK1P53667 647 aa13.09□□□□□ -0.31
SPTLC1P3-201ENST00000403408 TWF1Q12792 350 aa13.09□□□□□ -0.31
SPTLC1P3-201ENST00000403408 PDZD4Q76G19 769 aaPredicted RBP13.09□□□□□ -0.31
SPTLC1P3-201ENST00000403408 CATSPER3Q86XQ3 398 aa13.09□□□□□ -0.31
SPTLC1P3-201ENST00000403408 TMC8Q8IU68 726 aa13.09□□□□□ -0.31
SPTLC1P3-201ENST00000403408 SLFN12Q8IYM2 578 aa13.09□□□□□ -0.31
SPTLC1P3-201ENST00000403408 C18orf25Q96B23 403 aaPredicted RBP13.09□□□□□ -0.31
SPTLC1P3-201ENST00000403408 ZFYVE19Q96K21 471 aa13.09□□□□□ -0.31
SPTLC1P3-201ENST00000403408 DNAJC25Q9H1X3 360 aa13.09□□□□□ -0.31
SPTLC1P3-201ENST00000403408 ARRDC1-AS1Q9H2J1 176 aa13.09□□□□□ -0.31
SPTLC1P3-201ENST00000403408 PCDHA12Q9UN75 941 aa13.09□□□□□ -0.31
SPTLC1P3-201ENST00000403408 ASCC3Q8N3C0 2202 aaKnown RBP13.09□□□□□ -0.31
SPTLC1P3-201ENST00000403408 MYBPHLA2RUH7 354 aa13.08□□□□□ -0.32
SPTLC1P3-201ENST00000403408 C1QTNF9BB2RNN3 333 aa13.08□□□□□ -0.32
SPTLC1P3-201ENST00000403408 PODXLO00592 558 aa13.08□□□□□ -0.32
SPTLC1P3-201ENST00000403408 ZNF263O14978 683 aa13.08□□□□□ -0.32
SPTLC1P3-201ENST00000403408 C1QTNF9P0C862 333 aa13.08□□□□□ -0.32
SPTLC1P3-201ENST00000403408 MYL4P12829 197 aa13.08□□□□□ -0.32
SPTLC1P3-201ENST00000403408 TXKP42681 527 aa13.08□□□□□ -0.32
SPTLC1P3-201ENST00000403408 CALCRLQ16602 461 aa13.08□□□□□ -0.32
SPTLC1P3-201ENST00000403408 MAPK6Q16659 721 aa13.08□□□□□ -0.32
SPTLC1P3-201ENST00000403408 RNF19BQ6ZMZ0 732 aa13.08□□□□□ -0.32
SPTLC1P3-201ENST00000403408 KBTBD6Q86V97 674 aa13.08□□□□□ -0.32
SPTLC1P3-201ENST00000403408 WDR5BQ86VZ2 330 aa13.08□□□□□ -0.32
SPTLC1P3-201ENST00000403408 ZBTB8OSQ8IWT0 167 aa13.08□□□□□ -0.32
SPTLC1P3-201ENST00000403408 DEPDC1BQ8WUY9 529 aa13.08□□□□□ -0.32
SPTLC1P3-201ENST00000403408 CHFRQ96EP1 664 aa13.08□□□□□ -0.32
SPTLC1P3-201ENST00000403408 TMEM121BQ9BXQ6 578 aaPredicted RBP13.08□□□□□ -0.32
SPTLC1P3-201ENST00000403408 WASF3Q9UPY6 502 aa13.08□□□□□ -0.32
SPTLC1P3-201ENST00000403408 FLNBO75369 2602 aaKnown RBP13.08□□□□□ -0.32
SPTLC1P3-201ENST00000403408 BPTFQ12830 3046 aa13.07□□□□□ -0.32
SPTLC1P3-201ENST00000403408 SPECC1L-ADORA2AF8WAN1 911 aa13.07□□□□□ -0.32
SPTLC1P3-201ENST00000403408 ABLIM1O14639 778 aa13.07□□□□□ -0.32
SPTLC1P3-201ENST00000403408 ZNF197O14709 1029 aa13.07□□□□□ -0.32
SPTLC1P3-201ENST00000403408 GIPC1O14908 333 aa13.07□□□□□ -0.32
SPTLC1P3-201ENST00000403408 KCNK5O95279 499 aa13.07□□□□□ -0.32
SPTLC1P3-201ENST00000403408 BAG4O95429 457 aaKnown RBP13.07□□□□□ -0.32
SPTLC1P3-201ENST00000403408 TOP3BO95985 862 aaKnown RBP13.07□□□□□ -0.32
SPTLC1P3-201ENST00000403408 PROS1P07225 676 aa13.07□□□□□ -0.32
SPTLC1P3-201ENST00000403408 XRCC6P12956 609 aaKnown RBP eCLIP13.07□□□□□ -0.32
SPTLC1P3-201ENST00000403408 ATP2B1P20020 1258 aa13.07□□□□□ -0.32
SPTLC1P3-201ENST00000403408 PSMA5P28066 241 aa13.07□□□□□ -0.32
SPTLC1P3-201ENST00000403408 HOXA6P31267 233 aa13.07□□□□□ -0.32
SPTLC1P3-201ENST00000403408 ELF1P32519 619 aa13.07□□□□□ -0.32
SPTLC1P3-201ENST00000403408 CTHP32929 405 aa13.07□□□□□ -0.32
SPTLC1P3-201ENST00000403408 CNR2P34972 360 aa13.07□□□□□ -0.32
SPTLC1P3-201ENST00000403408 RAP1GAPP47736 663 aa13.07□□□□□ -0.32
SPTLC1P3-201ENST00000403408 FCHO2Q0JRZ9 810 aa13.07□□□□□ -0.32
SPTLC1P3-201ENST00000403408 CCINQ13939 588 aa13.07□□□□□ -0.32
SPTLC1P3-201ENST00000403408 PPP2R5DQ14738 602 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms