RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 MTTPP55157 894 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 NPEPPSP55786 919 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 SP4Q02446 784 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 PDK3Q15120 406 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 TCHHL1Q5QJ38 904 aaPredicted RBP9.81□□□□□ -0.84
COL28A1-201ENST00000399429 TBC1D9BQ66K14 1250 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 RIPOR1Q6ZS17 1223 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 SATL1Q86VE3 508 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 OR6Y1Q8NGX8 325 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 ARL8BQ9NVJ2 186 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 USP17L15C9J2P7 530 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 USP17L13C9JLJ4 530 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 USP17L11C9JVI0 530 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 USP17L18D6R9N7 530 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 USP17L22D6RA61 530 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 USP17L17D6RBQ6 530 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 USP17L19D6RCP7 530 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 USP17L20D6RJB6 530 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 GAS7O60861 476 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 ITGA2BP08514 1039 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 SRGAP2CP0DJJ0 459 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 SRGAP2BP0DMP2 458 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 MAGEA8P43361 318 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 CDK7P50613 346 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 MECOMQ03112 1051 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 USP17L24Q0WX57 530 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 TRIM16LQ309B1 348 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 ACSBG2Q5FVE4 666 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 USP17L6PQ6QN14 398 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 CLNKQ7Z7G1 428 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 TCP10LQ8TDR4 215 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 DGCR14Q96DF8 476 aaKnown RBP9.81□□□□□ -0.84
COL28A1-201ENST00000399429 PLEKHG4BQ96PX9 1271 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 PHF12Q96QT6 1004 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 SENP7Q9BQF6 1050 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 CALN1Q9BXU9 219 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 DHX36Q9H2U1 1008 aaKnown RBP9.81□□□□□ -0.84
COL28A1-201ENST00000399429 ADA2Q9NZK5 511 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 FIS1Q9Y3D6 152 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 TBX22Q9Y458 520 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 A0A0A6YYK5 440 aaPredicted RBP9.8□□□□□ -0.84
COL28A1-201ENST00000399429 RNF103-CHMP3A0A140T963 221 aa9.8□□□□□ -0.84
COL28A1-201ENST00000399429 LCA5LO95447 670 aa9.8□□□□□ -0.84
COL28A1-201ENST00000399429 OCM2P0CE71 109 aa9.8□□□□□ -0.84
COL28A1-201ENST00000399429 OCMP0CE72 109 aaPredicted RBP9.8□□□□□ -0.84
COL28A1-201ENST00000399429 PMLP29590 882 aa9.8□□□□□ -0.84
COL28A1-201ENST00000399429 AQP5P55064 265 aa9.8□□□□□ -0.84
COL28A1-201ENST00000399429 EDRF1Q3B7T1 1238 aa9.8□□□□□ -0.84
COL28A1-201ENST00000399429 KCTD1Q719H9 257 aa9.8□□□□□ -0.84
COL28A1-201ENST00000399429 RSPH3Q86UC2 560 aa9.8□□□□□ -0.84
COL28A1-201ENST00000399429 ALG3Q92685 438 aa9.8□□□□□ -0.84
COL28A1-201ENST00000399429 CLPTM1LQ96KA5 538 aa9.8□□□□□ -0.84
COL28A1-201ENST00000399429 CCDC138Q96M89 665 aa9.8□□□□□ -0.84
COL28A1-201ENST00000399429 MPHOSPH6Q99547 160 aaKnown RBP9.8□□□□□ -0.84
COL28A1-201ENST00000399429 EFHD1Q9BUP0 239 aa9.8□□□□□ -0.84
COL28A1-201ENST00000399429 TMEM117Q9H0C3 514 aa9.8□□□□□ -0.84
COL28A1-201ENST00000399429 KLHL25Q9H0H3 589 aa9.8□□□□□ -0.84
COL28A1-201ENST00000399429 EHMT1Q9H9B1 1298 aa9.8□□□□□ -0.84
COL28A1-201ENST00000399429 STX18Q9P2W9 335 aaKnown RBP9.8□□□□□ -0.84
COL28A1-201ENST00000399429 EMSYQ7Z589 1322 aa9.8□□□□□ -0.84
COL28A1-201ENST00000399429 WDR64B1ANS9 1081 aa9.8□□□□□ -0.84
COL28A1-201ENST00000399429 PDXKO00764 312 aa9.8□□□□□ -0.84
COL28A1-201ENST00000399429 FOXP2O15409 715 aa9.8□□□□□ -0.84
COL28A1-201ENST00000399429 MAP4P27816 1152 aaKnown RBP9.8□□□□□ -0.84
COL28A1-201ENST00000399429 HOXA7P31268 230 aaPredicted RBP9.8□□□□□ -0.84
COL28A1-201ENST00000399429 CHN2P52757 468 aa9.8□□□□□ -0.84
COL28A1-201ENST00000399429 YARSP54577 528 aaKnown RBP9.8□□□□□ -0.84
COL28A1-201ENST00000399429 HDAC4P56524 1084 aa9.8□□□□□ -0.84
COL28A1-201ENST00000399429 OTUD4Q01804 1114 aaKnown RBP9.8□□□□□ -0.84
COL28A1-201ENST00000399429 OCA2Q04671 838 aa9.8□□□□□ -0.84
COL28A1-201ENST00000399429 KLRC3Q07444 240 aa9.8□□□□□ -0.84
COL28A1-201ENST00000399429 CHI3L2Q15782 390 aa9.8□□□□□ -0.84
COL28A1-201ENST00000399429 TBC1D25Q3MII6 688 aa9.8□□□□□ -0.84
COL28A1-201ENST00000399429 C2CD6Q53TS8 623 aa9.8□□□□□ -0.84
COL28A1-201ENST00000399429 EMC10Q5UCC4 262 aa9.8□□□□□ -0.84
COL28A1-201ENST00000399429 PCNX4Q63HM2 1172 aa9.8□□□□□ -0.84
COL28A1-201ENST00000399429 LPCAT4Q643R3 524 aa9.8□□□□□ -0.84
COL28A1-201ENST00000399429 OTOAQ7RTW8 1153 aa9.8□□□□□ -0.84
COL28A1-201ENST00000399429 RFX6Q8HWS3 928 aa9.8□□□□□ -0.84
COL28A1-201ENST00000399429 GIPC3Q8TF64 312 aa9.8□□□□□ -0.84
COL28A1-201ENST00000399429 SMYD2Q9NRG4 433 aa9.8□□□□□ -0.84
COL28A1-201ENST00000399429 HERC5Q9UII4 1024 aaKnown RBP9.8□□□□□ -0.84
COL28A1-201ENST00000399429 CYP27B1O15528 508 aa9.8□□□□□ -0.84
COL28A1-201ENST00000399429 XPOTO43592 962 aaKnown RBP9.8□□□□□ -0.84
COL28A1-201ENST00000399429 PEX1O43933 1283 aa9.8□□□□□ -0.84
COL28A1-201ENST00000399429 NEK3P51956 506 aa9.8□□□□□ -0.84
COL28A1-201ENST00000399429 PTK7Q13308 1070 aa9.8□□□□□ -0.84
COL28A1-201ENST00000399429 DDI1Q8WTU0 396 aa9.8□□□□□ -0.84
COL28A1-201ENST00000399429 CADM1Q9BY67 442 aaKnown RBP9.8□□□□□ -0.84
COL28A1-201ENST00000399429 USP17L5A8MUK1 530 aa9.79□□□□□ -0.84
COL28A1-201ENST00000399429 AKAP3O75969 853 aa9.79□□□□□ -0.84
COL28A1-201ENST00000399429 ENO3P13929 434 aaPredicted RBP9.79□□□□□ -0.84
COL28A1-201ENST00000399429 GAP43P17677 238 aa9.79□□□□□ -0.84
COL28A1-201ENST00000399429 PRDX5P30044 214 aa9.79□□□□□ -0.84
COL28A1-201ENST00000399429 RPL5P46777 297 aaKnown RBP9.79□□□□□ -0.84
COL28A1-201ENST00000399429 COPAP53621 1224 aa9.79□□□□□ -0.84
COL28A1-201ENST00000399429 HIRAP54198 1017 aaPredicted RBP9.79□□□□□ -0.84
COL28A1-201ENST00000399429 GEMIN4P57678 1058 aaKnown RBP9.79□□□□□ -0.84
COL28A1-201ENST00000399429 PDIA5Q14554 519 aa9.79□□□□□ -0.84
COL28A1-201ENST00000399429 GRM4Q14833 912 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms