RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 RALAP11233 206 aa11.36□□□□□ -0.59
CCDC40-204ENST00000397545 KRT10P13645 584 aa11.36□□□□□ -0.59
CCDC40-204ENST00000397545 ATXN3P54252 364 aaPredicted RBP11.36□□□□□ -0.59
CCDC40-204ENST00000397545 SATB1Q01826 763 aa11.36□□□□□ -0.59
CCDC40-204ENST00000397545 OVGP1Q12889 678 aa11.36□□□□□ -0.59
CCDC40-204ENST00000397545 DRP2Q13474 957 aa11.36□□□□□ -0.59
CCDC40-204ENST00000397545 STXBP2Q15833 593 aa11.36□□□□□ -0.59
CCDC40-204ENST00000397545 SDCCAG3Q96C92 435 aa11.36□□□□□ -0.59
CCDC40-204ENST00000397545 TLR10Q9BXR5 811 aa11.36□□□□□ -0.59
CCDC40-204ENST00000397545 PABPC3Q9H361 631 aaKnown RBP11.36□□□□□ -0.59
CCDC40-204ENST00000397545 SUDS3Q9H7L9 328 aaPredicted RBP11.36□□□□□ -0.59
CCDC40-204ENST00000397545 TUFT1Q9NNX1 390 aa11.36□□□□□ -0.59
CCDC40-204ENST00000397545 RAB6BQ9NRW1 208 aa11.36□□□□□ -0.59
CCDC40-204ENST00000397545 NDE1Q9NXR1 346 aa11.36□□□□□ -0.59
CCDC40-204ENST00000397545 POLRMTO00411 1230 aaKnown RBP11.35□□□□□ -0.59
CCDC40-204ENST00000397545 DPEP1P16444 411 aa11.35□□□□□ -0.59
CCDC40-204ENST00000397545 TAL1P17542 331 aaPredicted RBP11.35□□□□□ -0.59
CCDC40-204ENST00000397545 MAGEA4P43358 317 aa11.35□□□□□ -0.59
CCDC40-204ENST00000397545 SURF1Q15526 300 aa11.35□□□□□ -0.59
CCDC40-204ENST00000397545 LRRC23Q53EV4 343 aaPredicted RBP11.35□□□□□ -0.59
CCDC40-204ENST00000397545 KDM7AQ6ZMT4 941 aa11.35□□□□□ -0.59
CCDC40-204ENST00000397545 SH3RF1Q7Z6J0 888 aa11.35□□□□□ -0.59
CCDC40-204ENST00000397545 ELMO3Q96BJ8 720 aa11.35□□□□□ -0.59
CCDC40-204ENST00000397545 CCDC138Q96M89 665 aa11.35□□□□□ -0.59
CCDC40-204ENST00000397545 DUSP9Q99956 384 aaKnown RBP11.35□□□□□ -0.59
CCDC40-204ENST00000397545 CARD9Q9H257 536 aa11.35□□□□□ -0.59
CCDC40-204ENST00000397545 PARVAQ9NVD7 372 aa11.35□□□□□ -0.59
CCDC40-204ENST00000397545 UVRAGQ9P2Y5 699 aa11.35□□□□□ -0.59
CCDC40-204ENST00000397545 FEM1BQ9UK73 627 aa11.35□□□□□ -0.59
CCDC40-204ENST00000397545 TIAM2Q8IVF5 1701 aa11.35□□□□□ -0.59
CCDC40-204ENST00000397545 DOCK2Q92608 1830 aa11.35□□□□□ -0.59
CCDC40-204ENST00000397545 GNGT2O14610 69 aa11.35□□□□□ -0.59
CCDC40-204ENST00000397545 MAP3K6O95382 1288 aa11.35□□□□□ -0.59
CCDC40-204ENST00000397545 LMNAP02545 664 aaKnown RBP11.35□□□□□ -0.59
CCDC40-204ENST00000397545 APOEP02649 317 aa11.35□□□□□ -0.59
CCDC40-204ENST00000397545 RFX1P22670 979 aa11.35□□□□□ -0.59
CCDC40-204ENST00000397545 RGS7P49802 495 aa11.35□□□□□ -0.59
CCDC40-204ENST00000397545 MAPK7Q13164 816 aa11.35□□□□□ -0.59
CCDC40-204ENST00000397545 ANKRD20A4Q4UJ75 823 aa11.35□□□□□ -0.59
CCDC40-204ENST00000397545 ANKRD20A8PQ5CZ79 823 aa11.35□□□□□ -0.59
CCDC40-204ENST00000397545 ANKRD20A2Q5SQ80 823 aa11.35□□□□□ -0.59
CCDC40-204ENST00000397545 ANKRD20A1Q5TYW2 823 aa11.35□□□□□ -0.59
CCDC40-204ENST00000397545 CDR2LQ86X02 465 aaPredicted RBP11.35□□□□□ -0.59
CCDC40-204ENST00000397545 ARMC2Q8NEN0 867 aa11.35□□□□□ -0.59
CCDC40-204ENST00000397545 GRAMD1AQ96CP6 724 aa11.35□□□□□ -0.59
CCDC40-204ENST00000397545 AGAP3Q96P47 875 aa11.35□□□□□ -0.59
CCDC40-204ENST00000397545 MCEEQ96PE7 176 aa11.35□□□□□ -0.59
CCDC40-204ENST00000397545 SERPINI1Q99574 410 aa11.35□□□□□ -0.59
CCDC40-204ENST00000397545 NOD2Q9HC29 1040 aa11.35□□□□□ -0.59
CCDC40-204ENST00000397545 GPRC5CQ9NQ84 441 aa11.35□□□□□ -0.59
CCDC40-204ENST00000397545 GTSE1Q9NYZ3 720 aa11.35□□□□□ -0.59
CCDC40-204ENST00000397545 ARAP2Q8WZ64 1704 aa11.35□□□□□ -0.59
CCDC40-204ENST00000397545 XPOTO43592 962 aaKnown RBP11.35□□□□□ -0.59
CCDC40-204ENST00000397545 ADRA2BP18089 450 aa11.35□□□□□ -0.59
CCDC40-204ENST00000397545 TBXAS1P24557 533 aaPredicted RBP11.35□□□□□ -0.59
CCDC40-204ENST00000397545 ARPP19P56211 112 aa11.35□□□□□ -0.59
CCDC40-204ENST00000397545 RHBDL3P58872 404 aa11.35□□□□□ -0.59
CCDC40-204ENST00000397545 PHEXP78562 749 aa11.35□□□□□ -0.59
CCDC40-204ENST00000397545 ROR1Q01973 937 aa11.35□□□□□ -0.59
CCDC40-204ENST00000397545 BAATQ14032 418 aaPredicted RBP11.35□□□□□ -0.59
CCDC40-204ENST00000397545 TMTC4Q5T4D3 741 aa11.35□□□□□ -0.59
CCDC40-204ENST00000397545 C3orf62Q6ZUJ4 267 aa11.35□□□□□ -0.59
CCDC40-204ENST00000397545 SLC13A5Q86YT5 568 aaPredicted RBP11.35□□□□□ -0.59
CCDC40-204ENST00000397545 RNF135Q8IUD6 432 aa11.35□□□□□ -0.59
CCDC40-204ENST00000397545 RNF149Q8NC42 400 aa11.35□□□□□ -0.59
CCDC40-204ENST00000397545 SPIRE2Q8WWL2 714 aa11.35□□□□□ -0.59
CCDC40-204ENST00000397545 ZNF302Q9NR11 478 aa11.35□□□□□ -0.59
CCDC40-204ENST00000397545 AGPAT3Q9NRZ7 376 aa11.35□□□□□ -0.59
CCDC40-204ENST00000397545 STRIP2Q9ULQ0 834 aa11.35□□□□□ -0.59
CCDC40-204ENST00000397545 NRAPQ86VF7 1730 aa11.35□□□□□ -0.59
CCDC40-204ENST00000397545 COILP38432 576 aaPredicted RBP11.35□□□□□ -0.59
CCDC40-204ENST00000397545 NFIAQ12857 509 aa11.35□□□□□ -0.59
CCDC40-204ENST00000397545 DUOXA2Q1HG44 320 aa11.35□□□□□ -0.59
CCDC40-204ENST00000397545 SEZ6Q53EL9 994 aa11.35□□□□□ -0.59
CCDC40-204ENST00000397545 RSBN1LQ6PCB5 846 aaPredicted RBP11.35□□□□□ -0.59
CCDC40-204ENST00000397545 TSEN2Q8NCE0 465 aaKnown RBP11.35□□□□□ -0.59
CCDC40-204ENST00000397545 SCFD1Q8WVM8 642 aa11.35□□□□□ -0.59
CCDC40-204ENST00000397545 FGD4Q96M96 766 aa11.35□□□□□ -0.59
CCDC40-204ENST00000397545 TSPYL2Q9H2G4 693 aaPredicted RBP11.35□□□□□ -0.59
CCDC40-204ENST00000397545 SEMA4AQ9H3S1 761 aa11.35□□□□□ -0.59
CCDC40-204ENST00000397545 ADA2Q9NZK5 511 aa11.35□□□□□ -0.59
CCDC40-204ENST00000397545 LOC100653049A0A140TA62 436 aa11.34□□□□□ -0.59
CCDC40-204ENST00000397545 KRT34O76011 436 aa11.34□□□□□ -0.59
CCDC40-204ENST00000397545 WEE2P0C1S8 567 aa11.34□□□□□ -0.59
CCDC40-204ENST00000397545 SRGAP2BP0DMP2 458 aa11.34□□□□□ -0.59
CCDC40-204ENST00000397545 GPC3P51654 580 aa11.34□□□□□ -0.59
CCDC40-204ENST00000397545 PSMC6P62333 389 aa11.34□□□□□ -0.59
CCDC40-204ENST00000397545 HEATR6Q6AI08 1181 aaKnown RBP11.34□□□□□ -0.59
CCDC40-204ENST00000397545 RNF168Q8IYW5 571 aaPredicted RBP11.34□□□□□ -0.59
CCDC40-204ENST00000397545 ACAP3Q96P50 834 aa11.34□□□□□ -0.59
CCDC40-204ENST00000397545 SHCBP1LQ9BZQ2 653 aa11.34□□□□□ -0.59
CCDC40-204ENST00000397545 DDX4Q9NQI0 724 aaKnown RBP11.34□□□□□ -0.59
CCDC40-204ENST00000397545 KCNQ5Q9NR82 932 aa11.34□□□□□ -0.59
CCDC40-204ENST00000397545 PITPNM2Q9BZ72 1349 aa11.34□□□□□ -0.59
CCDC40-204ENST00000397545 MYH6P13533 1939 aa11.34□□□□□ -0.59
CCDC40-204ENST00000397545 LTBP4Q8N2S1 1624 aa11.34□□□□□ -0.59
CCDC40-204ENST00000397545 GOLGB1Q14789 3259 aaKnown RBP11.34□□□□□ -0.59
CCDC40-204ENST00000397545 MSH4O15457 936 aa11.34□□□□□ -0.59
CCDC40-204ENST00000397545 ATP9BO43861 1147 aa11.34□□□□□ -0.59
CCDC40-204ENST00000397545 SFNP31947 248 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms