RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 MARCH6O60337 910 aa11.86□□□□□ -0.51
CUX1-204ENST00000393824 CCNE2O96020 404 aa11.86□□□□□ -0.51
CUX1-204ENST00000393824 PYGLP06737 847 aa11.86□□□□□ -0.51
CUX1-204ENST00000393824 SPATA31C1P0DKV0 1188 aa11.86□□□□□ -0.51
CUX1-204ENST00000393824 RARGP13631 454 aa11.86□□□□□ -0.51
CUX1-204ENST00000393824 EDNRBP24530 442 aa11.86□□□□□ -0.51
CUX1-204ENST00000393824 RAD23BP54727 409 aa11.86□□□□□ -0.51
CUX1-204ENST00000393824 MAPK7Q13164 816 aa11.86□□□□□ -0.51
CUX1-204ENST00000393824 ENOX2Q16206 610 aaKnown RBP11.86□□□□□ -0.51
CUX1-204ENST00000393824 POTEBQ6S5H4 581 aa11.86□□□□□ -0.51
CUX1-204ENST00000393824 MAEAQ7L5Y9 396 aa11.86□□□□□ -0.51
CUX1-204ENST00000393824 FRMD5Q7Z6J6 570 aa11.86□□□□□ -0.51
CUX1-204ENST00000393824 VPS36Q86VN1 386 aa11.86□□□□□ -0.51
CUX1-204ENST00000393824 JAMLQ86YT9 394 aa11.86□□□□□ -0.51
CUX1-204ENST00000393824 AGGF1Q8N302 714 aaeCLIP11.86□□□□□ -0.512e-7■■■■■ 57.8
CUX1-204ENST00000393824 ANKLE1Q8NAG6 615 aa11.86□□□□□ -0.51
CUX1-204ENST00000393824 ASAP3Q8TDY4 903 aa11.86□□□□□ -0.51
CUX1-204ENST00000393824 EPS8L3Q8TE67 593 aaKnown RBP11.86□□□□□ -0.51
CUX1-204ENST00000393824 UNC45AQ9H3U1 944 aa11.86□□□□□ -0.51
CUX1-204ENST00000393824 PIDD1Q9HB75 910 aa11.86□□□□□ -0.51
CUX1-204ENST00000393824 GRHL1Q9NZI5 618 aa11.86□□□□□ -0.51
CUX1-204ENST00000393824 LMCD1Q9NZU5 365 aa11.86□□□□□ -0.51
CUX1-204ENST00000393824 KLHL14Q9P2G3 628 aa11.86□□□□□ -0.51
CUX1-204ENST00000393824 PARP2Q9UGN5 583 aa11.86□□□□□ -0.51
CUX1-204ENST00000393824 PCDHA2Q9Y5H9 948 aa11.86□□□□□ -0.51
CUX1-204ENST00000393824 POTEFA5A3E0 1075 aa11.85□□□□□ -0.51
CUX1-204ENST00000393824 SMIM23A6NLE4 172 aa11.85□□□□□ -0.51
CUX1-204ENST00000393824 MAP3K13O43283 966 aa11.85□□□□□ -0.51
CUX1-204ENST00000393824 RIPK2O43353 540 aa11.85□□□□□ -0.51
CUX1-204ENST00000393824 ARIH2O95376 493 aa11.85□□□□□ -0.51
CUX1-204ENST00000393824 IMPDH2P12268 514 aa11.85□□□□□ -0.51
CUX1-204ENST00000393824 SP100P23497 879 aaPredicted RBP11.85□□□□□ -0.51
CUX1-204ENST00000393824 ABCD1P33897 745 aa11.85□□□□□ -0.51
CUX1-204ENST00000393824 VEGFBP49765 207 aa11.85□□□□□ -0.51
CUX1-204ENST00000393824 PSMC6P62333 389 aa11.85□□□□□ -0.51
CUX1-204ENST00000393824 MGAT5Q09328 741 aa11.85□□□□□ -0.51
CUX1-204ENST00000393824 LRRC41Q15345 812 aa11.85□□□□□ -0.51
CUX1-204ENST00000393824 PTPROQ16827 1216 aa11.85□□□□□ -0.51
CUX1-204ENST00000393824 POTEGQ6S5H5 508 aa11.85□□□□□ -0.51
CUX1-204ENST00000393824 SEPT14Q6ZU15 432 aa11.85□□□□□ -0.51
CUX1-204ENST00000393824 SHCBP1Q8NEM2 672 aa11.85□□□□□ -0.51
CUX1-204ENST00000393824 FAM136AQ96C01 138 aa11.85□□□□□ -0.51
CUX1-204ENST00000393824 GRAMD1AQ96CP6 724 aa11.85□□□□□ -0.51
CUX1-204ENST00000393824 RMDN2Q96LZ7 410 aa11.85□□□□□ -0.51
CUX1-204ENST00000393824 VCXQ9H320 206 aa11.85□□□□□ -0.51
CUX1-204ENST00000393824 KCTD10Q9H3F6 313 aa11.85□□□□□ -0.51
CUX1-204ENST00000393824 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.85□□□□□ -0.515e-24■■■■■ 156.6
CUX1-204ENST00000393824 RASAL2Q9UJF2 1139 aa11.85□□□□□ -0.51
CUX1-204ENST00000393824 RPL26L1Q9UNX3 145 aaKnown RBP11.85□□□□□ -0.51
CUX1-204ENST00000393824 SNX24Q9Y343 169 aa11.85□□□□□ -0.51
CUX1-204ENST00000393824 ZSWIM8A7E2V4 1837 aa11.85□□□□□ -0.51
CUX1-204ENST00000393824 TBX3O15119 743 aa11.85□□□□□ -0.51
CUX1-204ENST00000393824 DDX3YO15523 660 aaKnown RBP11.85□□□□□ -0.51
CUX1-204ENST00000393824 CCND2P30279 289 aa11.85□□□□□ -0.51
CUX1-204ENST00000393824 SP4Q02446 784 aa11.85□□□□□ -0.51
CUX1-204ENST00000393824 KCNH2Q12809 1159 aa11.85□□□□□ -0.51
CUX1-204ENST00000393824 CUL3Q13618 768 aa11.85□□□□□ -0.51
CUX1-204ENST00000393824 TSNAXIP1Q2TAA8 658 aa11.85□□□□□ -0.51
CUX1-204ENST00000393824 OR52E8Q6IFG1 317 aa11.85□□□□□ -0.51
CUX1-204ENST00000393824 IRGCQ6NXR0 463 aa11.85□□□□□ -0.51
CUX1-204ENST00000393824 TMEM154Q6P9G4 183 aa11.85□□□□□ -0.51
CUX1-204ENST00000393824 ARHGAP22Q7Z5H3 698 aa11.85□□□□□ -0.51
CUX1-204ENST00000393824 SDCCAG8Q86SQ7 713 aaPredicted RBP11.85□□□□□ -0.51
CUX1-204ENST00000393824 CATSPER3Q86XQ3 398 aa11.85□□□□□ -0.51
CUX1-204ENST00000393824 FBXO16Q8IX29 292 aaPredicted RBP11.85□□□□□ -0.51
CUX1-204ENST00000393824 SAMD3Q8N6K7 520 aa11.85□□□□□ -0.51
CUX1-204ENST00000393824 GLIS3Q8NEA6 775 aa11.85□□□□□ -0.51
CUX1-204ENST00000393824 DNERQ8NFT8 737 aa11.85□□□□□ -0.51
CUX1-204ENST00000393824 INPP5DQ92835 1189 aa11.85□□□□□ -0.51
CUX1-204ENST00000393824 GLG1Q92896 1179 aa11.85□□□□□ -0.51
CUX1-204ENST00000393824 FAM20AQ96MK3 541 aa11.85□□□□□ -0.51
CUX1-204ENST00000393824 RUNDC3BQ96NL0 473 aa11.85□□□□□ -0.51
CUX1-204ENST00000393824 TRAPPC9Q96Q05 1148 aa11.85□□□□□ -0.51
CUX1-204ENST00000393824 PDGFCQ9NRA1 345 aa11.85□□□□□ -0.51
CUX1-204ENST00000393824 MTRF1LQ9UGC7 380 aaKnown RBP11.85□□□□□ -0.51
CUX1-204ENST00000393824 DBR1Q9UK59 544 aaKnown RBP11.85□□□□□ -0.51
CUX1-204ENST00000393824 ZNFX1Q9P2E3 1918 aaKnown RBP11.84□□□□□ -0.51
CUX1-204ENST00000393824 TMEM120BA0PK00 339 aa11.84□□□□□ -0.51
CUX1-204ENST00000393824 EIF4E1BA6NMX2 242 aaKnown RBP11.84□□□□□ -0.51
CUX1-204ENST00000393824 PODXLO00592 558 aa11.84□□□□□ -0.51
CUX1-204ENST00000393824 GAS7O60861 476 aa11.84□□□□□ -0.51
CUX1-204ENST00000393824 EYA4O95677 639 aa11.84□□□□□ -0.51
CUX1-204ENST00000393824 GSTA2P09210 222 aa11.84□□□□□ -0.51
CUX1-204ENST00000393824 KCNA2P16389 499 aa11.84□□□□□ -0.51
CUX1-204ENST00000393824 NOGQ13253 232 aa11.84□□□□□ -0.51
CUX1-204ENST00000393824 LRRC14Q15048 493 aa11.84□□□□□ -0.51
CUX1-204ENST00000393824 ZNF792Q3KQV3 632 aa11.84□□□□□ -0.51
CUX1-204ENST00000393824 ZNF568Q3ZCX4 644 aa11.84□□□□□ -0.51
CUX1-204ENST00000393824 WASHC2DQ5SRD0 308 aa11.84□□□□□ -0.51
CUX1-204ENST00000393824 HHATQ5VTY9 493 aa11.84□□□□□ -0.51
CUX1-204ENST00000393824 DCAF12L1Q5VU92 463 aa11.84□□□□□ -0.51
CUX1-204ENST00000393824 VSTM1Q6UX27 236 aa11.84□□□□□ -0.51
CUX1-204ENST00000393824 SLFN12Q8IYM2 578 aa11.84□□□□□ -0.51
CUX1-204ENST00000393824 B4GALNT2Q8NHY0 566 aa11.84□□□□□ -0.51
CUX1-204ENST00000393824 NPLOC4Q8TAT6 608 aa11.84□□□□□ -0.51
CUX1-204ENST00000393824 DNAJC9Q8WXX5 260 aa11.84□□□□□ -0.51
CUX1-204ENST00000393824 RPS6KC1Q96S38 1066 aa11.84□□□□□ -0.51
CUX1-204ENST00000393824 EHMT1Q9H9B1 1298 aa11.84□□□□□ -0.51
CUX1-204ENST00000393824 DOCK5Q9H7D0 1870 aa11.84□□□□□ -0.51
CUX1-204ENST00000393824 E9PMD0 336 aa11.83□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms