RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 OSBPL9Q96SU4 736 aa15.33■□□□□ 0.05
HMGA1-203ENST00000374116 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP15.33■□□□□ 0.05
HMGA1-203ENST00000374116 GCOM2Q9BZD3 368 aaPredicted RBP15.33■□□□□ 0.05
HMGA1-203ENST00000374116 SALL4Q9UJQ4 1053 aa15.33■□□□□ 0.05
HMGA1-203ENST00000374116 A0A087X0T9 212 aa15.33■□□□□ 0.04
HMGA1-203ENST00000374116 LRRIQ3A6PVS8 624 aaPredicted RBP15.33■□□□□ 0.04
HMGA1-203ENST00000374116 BTNL10A8MVZ5 291 aa15.33■□□□□ 0.04
HMGA1-203ENST00000374116 PDE2AO00408 941 aaPredicted RBP15.33■□□□□ 0.04
HMGA1-203ENST00000374116 ASAP2O43150 1006 aa15.33■□□□□ 0.04
HMGA1-203ENST00000374116 FAM228BP0C875 321 aa15.33■□□□□ 0.04
HMGA1-203ENST00000374116 HNRNPH1P31943 449 aaKnown RBP15.33■□□□□ 0.04
HMGA1-203ENST00000374116 PRKCIP41743 596 aa15.33■□□□□ 0.04
HMGA1-203ENST00000374116 NAMPTP43490 491 aa15.33■□□□□ 0.04
HMGA1-203ENST00000374116 GTF2BQ00403 316 aa15.33■□□□□ 0.04
HMGA1-203ENST00000374116 ARID5AQ03989 594 aa15.33■□□□□ 0.04
HMGA1-203ENST00000374116 MBTD1Q05BQ5 628 aa15.33■□□□□ 0.04
HMGA1-203ENST00000374116 PAK2Q13177 524 aa15.33■□□□□ 0.04
HMGA1-203ENST00000374116 TFDP1Q14186 410 aa15.33■□□□□ 0.04
HMGA1-203ENST00000374116 MAP9Q49MG5 647 aa15.33■□□□□ 0.04
HMGA1-203ENST00000374116 CCDC70Q6NSX1 233 aa15.33■□□□□ 0.04
HMGA1-203ENST00000374116 TSHZ1Q6ZSZ6 1077 aa15.33■□□□□ 0.04
HMGA1-203ENST00000374116 ZNF365Q70YC5 407 aa15.33■□□□□ 0.04
HMGA1-203ENST00000374116 TMCO2Q7Z6W1 182 aaPredicted RBP15.33■□□□□ 0.04
HMGA1-203ENST00000374116 ZNF410Q86VK4 478 aa15.33■□□□□ 0.04
HMGA1-203ENST00000374116 C12orf56Q8IXR9 622 aa15.33■□□□□ 0.04
HMGA1-203ENST00000374116 MMGT1Q8N4V1 131 aa15.33■□□□□ 0.04
HMGA1-203ENST00000374116 CPB2Q96IY4 423 aa15.33■□□□□ 0.04
HMGA1-203ENST00000374116 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.33■□□□□ 0.043e-14■■■■■ 28.8
HMGA1-203ENST00000374116 SIX2Q9NPC8 291 aa15.33■□□□□ 0.04
HMGA1-203ENST00000374116 K7ENM7 598 aa15.32■□□□□ 0.04
HMGA1-203ENST00000374116 ATP8B3O60423 1300 aa15.32■□□□□ 0.04
HMGA1-203ENST00000374116 MGEA5O60502 916 aa15.32■□□□□ 0.04
HMGA1-203ENST00000374116 PHKA2P46019 1235 aa15.32■□□□□ 0.04
HMGA1-203ENST00000374116 NAP1L1P55209 391 aaKnown RBP15.32■□□□□ 0.04
HMGA1-203ENST00000374116 C9orf50Q5SZB4 431 aa15.32■□□□□ 0.04
HMGA1-203ENST00000374116 TAS1R3Q7RTX0 852 aa15.32■□□□□ 0.04
HMGA1-203ENST00000374116 CATSPER4Q7RTX7 472 aa15.32■□□□□ 0.04
HMGA1-203ENST00000374116 TMEM206Q9H813 350 aa15.32■□□□□ 0.04
HMGA1-203ENST00000374116 GCNT4Q9P109 453 aa15.32■□□□□ 0.04
HMGA1-203ENST00000374116 RNF14Q9UBS8 474 aa15.32■□□□□ 0.04
HMGA1-203ENST00000374116 ADAMTS1Q9UHI8 967 aa15.32■□□□□ 0.04
HMGA1-203ENST00000374116 FRMD4BQ9Y2L6 1034 aa15.32■□□□□ 0.04
HMGA1-203ENST00000374116 CXCL10P02778 98 aa15.31■□□□□ 0.04
HMGA1-203ENST00000374116 NCKAP1LP55160 1127 aa15.31■□□□□ 0.04
HMGA1-203ENST00000374116 JAM2P57087 298 aa15.31■□□□□ 0.04
HMGA1-203ENST00000374116 SATB1Q01826 763 aa15.31■□□□□ 0.04
HMGA1-203ENST00000374116 PTK2Q05397 1052 aa15.31■□□□□ 0.04
HMGA1-203ENST00000374116 PPP2R5AQ15172 486 aa15.31■□□□□ 0.04
HMGA1-203ENST00000374116 PLEKHG4Q58EX7 1191 aa15.31■□□□□ 0.04
HMGA1-203ENST00000374116 TMEM161BQ8NDZ6 487 aa15.31■□□□□ 0.04
HMGA1-203ENST00000374116 RUBCNQ92622 972 aa15.31■□□□□ 0.04
HMGA1-203ENST00000374116 IL23AQ9NPF7 189 aa15.31■□□□□ 0.04
HMGA1-203ENST00000374116 DAAM1Q9Y4D1 1078 aa15.31■□□□□ 0.04
HMGA1-203ENST00000374116 DENND3A2RUS2 1198 aa15.31■□□□□ 0.04
HMGA1-203ENST00000374116 A6NNZ2 444 aa15.31■□□□□ 0.04
HMGA1-203ENST00000374116 BUB1O43683 1085 aa15.31■□□□□ 0.04
HMGA1-203ENST00000374116 RPLP2P05387 115 aaKnown RBP15.31■□□□□ 0.04
HMGA1-203ENST00000374116 PAFAH1B1P43034 410 aa15.31■□□□□ 0.04
HMGA1-203ENST00000374116 SNRPFP62306 86 aaKnown RBP15.31■□□□□ 0.04
HMGA1-203ENST00000374116 PPIGQ13427 754 aaKnown RBP eCLIP15.31■□□□□ 0.04
HMGA1-203ENST00000374116 TUBB8Q3ZCM7 444 aa15.31■□□□□ 0.04
HMGA1-203ENST00000374116 PRPF38BQ5VTL8 546 aaKnown RBP15.31■□□□□ 0.04
HMGA1-203ENST00000374116 CDCA2Q69YH5 1023 aaPredicted RBP15.31■□□□□ 0.04
HMGA1-203ENST00000374116 HAUS6Q7Z4H7 955 aa15.31■□□□□ 0.04
HMGA1-203ENST00000374116 RTN4RL1Q86UN2 441 aaPredicted RBP15.31■□□□□ 0.04
HMGA1-203ENST00000374116 SLC17A8Q8NDX2 589 aa15.31■□□□□ 0.04
HMGA1-203ENST00000374116 COG1Q8WTW3 980 aa15.31■□□□□ 0.04
HMGA1-203ENST00000374116 NTPCRQ9BSD7 190 aaKnown RBP15.31■□□□□ 0.04
HMGA1-203ENST00000374116 TLR10Q9BXR5 811 aa15.31■□□□□ 0.04
HMGA1-203ENST00000374116 ERVK-5Q9HDB9 667 aa15.31■□□□□ 0.04
HMGA1-203ENST00000374116 CXXC1Q9P0U4 656 aaPredicted RBP15.31■□□□□ 0.04
HMGA1-203ENST00000374116 HPCAL4Q9UM19 191 aa15.31■□□□□ 0.04
HMGA1-203ENST00000374116 SUFUQ9UMX1 484 aa15.31■□□□□ 0.04
HMGA1-203ENST00000374116 PCDHGC5Q9Y5F6 944 aa15.31■□□□□ 0.04
HMGA1-203ENST00000374116 ZBBXA8MT70 800 aa15.3■□□□□ 0.04
HMGA1-203ENST00000374116 K7ERI5 159 aa15.3■□□□□ 0.04
HMGA1-203ENST00000374116 EBAG9O00559 213 aa15.3■□□□□ 0.04
HMGA1-203ENST00000374116 FERP16591 822 aa15.3■□□□□ 0.04
HMGA1-203ENST00000374116 FMO5P49326 533 aa15.3■□□□□ 0.04
HMGA1-203ENST00000374116 SMTNP53814 917 aa15.3■□□□□ 0.04
HMGA1-203ENST00000374116 CDC42EP1Q00587 391 aa15.3■□□□□ 0.04
HMGA1-203ENST00000374116 ENOX2Q16206 610 aaKnown RBP15.3■□□□□ 0.04
HMGA1-203ENST00000374116 TMEM240Q5SV17 173 aa15.3■□□□□ 0.04
HMGA1-203ENST00000374116 CCDC181Q5TID7 509 aa15.3■□□□□ 0.04
HMGA1-203ENST00000374116 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15.3■□□□□ 0.047e-31■■■■■ 70.4
HMGA1-203ENST00000374116 ZNF571Q7Z3V5 609 aaPredicted RBP15.3■□□□□ 0.04
HMGA1-203ENST00000374116 VPS36Q86VN1 386 aa15.3■□□□□ 0.04
HMGA1-203ENST00000374116 SPATS2Q86XZ4 545 aaKnown RBP15.3■□□□□ 0.04
HMGA1-203ENST00000374116 FMNL3Q8IVF7 1028 aa15.3■□□□□ 0.04
HMGA1-203ENST00000374116 ZBTB8OSQ8IWT0 167 aa15.3■□□□□ 0.04
HMGA1-203ENST00000374116 ACCSQ96QU6 501 aa15.3■□□□□ 0.04
HMGA1-203ENST00000374116 CCDC113Q9H0I3 377 aa15.3■□□□□ 0.04
HMGA1-203ENST00000374116 ARHGAP28Q9P2N2 729 aa15.3■□□□□ 0.04
HMGA1-203ENST00000374116 PIN4Q9Y237 131 aaKnown RBP15.3■□□□□ 0.04
HMGA1-203ENST00000374116 FAM169AQ9Y6X4 670 aa15.3■□□□□ 0.04
HMGA1-203ENST00000374116 GPR182O15218 404 aa15.29■□□□□ 0.04
HMGA1-203ENST00000374116 TSPAN1O60635 241 aa15.29■□□□□ 0.04
HMGA1-203ENST00000374116 PRKCBP05771 671 aa15.29■□□□□ 0.04
HMGA1-203ENST00000374116 ARF4P18085 180 aaPredicted RBP15.29■□□□□ 0.04
HMGA1-203ENST00000374116 HOXA11P31270 313 aaPredicted RBP15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms