RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 YAF2Q8IY57 180 aa15.72■□□□□ 0.11
COL17A1-201ENST00000353479 CHMP6Q96FZ7 201 aa15.72■□□□□ 0.11
COL17A1-201ENST00000353479 POP1Q99575 1024 aaKnown RBP15.72■□□□□ 0.11
COL17A1-201ENST00000353479 OSMRQ99650 979 aa15.72■□□□□ 0.11
COL17A1-201ENST00000353479 DDX50Q9BQ39 737 aaKnown RBP15.72■□□□□ 0.11
COL17A1-201ENST00000353479 RANBP17Q9H2T7 1088 aaKnown RBP15.72■□□□□ 0.11
COL17A1-201ENST00000353479 FARP1Q9Y4F1 1045 aaPredicted RBP15.72■□□□□ 0.11
COL17A1-201ENST00000353479 ZC3H4Q9UPT8 1303 aaKnown RBP15.72■□□□□ 0.11
COL17A1-201ENST00000353479 NFAT5O94916 1531 aa15.72■□□□□ 0.11
COL17A1-201ENST00000353479 HMGB1P1B2RPK0 211 aaPredicted RBP15.72■□□□□ 0.11
COL17A1-201ENST00000353479 KCNN4O15554 427 aa15.72■□□□□ 0.11
COL17A1-201ENST00000353479 DEUP1Q05D60 604 aa15.72■□□□□ 0.11
COL17A1-201ENST00000353479 NSUN2Q08J23 767 aaKnown RBP eCLIP15.72■□□□□ 0.11
COL17A1-201ENST00000353479 SPATA4Q8NEY3 305 aa15.72■□□□□ 0.11
COL17A1-201ENST00000353479 SLC7A14Q8TBB6 771 aa15.72■□□□□ 0.11
COL17A1-201ENST00000353479 SCFD1Q8WVM8 642 aa15.72■□□□□ 0.11
COL17A1-201ENST00000353479 ASIC4Q96FT7 647 aa15.72■□□□□ 0.11
COL17A1-201ENST00000353479 RASA4BC9J798 803 aa15.71■□□□□ 0.11
COL17A1-201ENST00000353479 RASA4O43374 803 aa15.71■□□□□ 0.11
COL17A1-201ENST00000353479 SYCP2LQ5T4T6 812 aa15.71■□□□□ 0.11
COL17A1-201ENST00000353479 SPATS2Q86XZ4 545 aaKnown RBP15.71■□□□□ 0.11
COL17A1-201ENST00000353479 CFAP61Q8NHU2 1237 aa15.71■□□□□ 0.11
COL17A1-201ENST00000353479 SH3TC2Q8TF17 1288 aa15.71■□□□□ 0.11
COL17A1-201ENST00000353479 ATP8B4Q8TF62 1192 aa15.71■□□□□ 0.11
COL17A1-201ENST00000353479 PPP2R3CQ969Q6 453 aa15.71■□□□□ 0.11
COL17A1-201ENST00000353479 TTC17Q96AE7 1141 aa15.71■□□□□ 0.11
COL17A1-201ENST00000353479 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP15.71■□□□□ 0.11
COL17A1-201ENST00000353479 DBR1Q9UK59 544 aaKnown RBP15.71■□□□□ 0.11
COL17A1-201ENST00000353479 IRF6O14896 467 aa15.71■□□□□ 0.11
COL17A1-201ENST00000353479 B3GAT3O94766 335 aa15.71■□□□□ 0.11
COL17A1-201ENST00000353479 IRF1P10914 325 aa15.71■□□□□ 0.11
COL17A1-201ENST00000353479 SKIP12755 728 aa15.71■□□□□ 0.11
COL17A1-201ENST00000353479 ACADSBP45954 432 aa15.71■□□□□ 0.11
COL17A1-201ENST00000353479 ALDH7A1P49419 539 aaKnown RBP15.71■□□□□ 0.11
COL17A1-201ENST00000353479 DCAF6Q58WW2 860 aa15.71■□□□□ 0.11
COL17A1-201ENST00000353479 VPS11Q9H270 941 aa15.71■□□□□ 0.11
COL17A1-201ENST00000353479 CYBBP04839 570 aa15.71■□□□□ 0.11
COL17A1-201ENST00000353479 PON1P27169 355 aa15.71■□□□□ 0.11
COL17A1-201ENST00000353479 CYP2C19P33261 490 aa15.71■□□□□ 0.11
COL17A1-201ENST00000353479 IFT88Q13099 833 aa15.71■□□□□ 0.11
COL17A1-201ENST00000353479 PPIL2Q13356 520 aa15.71■□□□□ 0.11
COL17A1-201ENST00000353479 TRIM65Q6PJ69 517 aa15.71■□□□□ 0.11
COL17A1-201ENST00000353479 LSM7Q9UK45 103 aaKnown RBP15.71■□□□□ 0.11
COL17A1-201ENST00000353479 DYNC1LI1Q9Y6G9 523 aaKnown RBP15.71■□□□□ 0.11
COL17A1-201ENST00000353479 GARTP22102 1010 aa15.71■□□□□ 0.11
COL17A1-201ENST00000353479 GUCY2CP25092 1073 aa15.71■□□□□ 0.11
COL17A1-201ENST00000353479 SNX17Q15036 470 aa15.71■□□□□ 0.11
COL17A1-201ENST00000353479 TSNAXIP1Q2TAA8 658 aa15.71■□□□□ 0.11
COL17A1-201ENST00000353479 KLHL38Q2WGJ6 581 aa15.71■□□□□ 0.11
COL17A1-201ENST00000353479 TRIM67Q6ZTA4 783 aa15.71■□□□□ 0.11
COL17A1-201ENST00000353479 OTOP1Q7RTM1 612 aa15.71■□□□□ 0.11
COL17A1-201ENST00000353479 TRAPPC11Q7Z392 1133 aa15.71■□□□□ 0.11
COL17A1-201ENST00000353479 RMDN1Q96DB5 314 aa15.71■□□□□ 0.11
COL17A1-201ENST00000353479 TAF1DQ9H5J8 278 aaPredicted RBP15.71■□□□□ 0.11
COL17A1-201ENST00000353479 ABI2Q9NYB9 513 aaPredicted RBP15.71■□□□□ 0.11
COL17A1-201ENST00000353479 GRIK4Q16099 956 aa15.71■□□□□ 0.1
COL17A1-201ENST00000353479 ZNF677Q86XU0 584 aa15.71■□□□□ 0.1
COL17A1-201ENST00000353479 C1orf131Q8NDD1 294 aaKnown RBP15.71■□□□□ 0.1
COL17A1-201ENST00000353479 MKL1Q969V6 931 aa15.71■□□□□ 0.1
COL17A1-201ENST00000353479 METTL5Q9NRN9 209 aaKnown RBP15.71■□□□□ 0.1
COL17A1-201ENST00000353479 TMEM150BA6NC51 233 aa15.7■□□□□ 0.1
COL17A1-201ENST00000353479 SLITRK3O94933 977 aa15.7■□□□□ 0.1
COL17A1-201ENST00000353479 ODC1P11926 461 aa15.7■□□□□ 0.1
COL17A1-201ENST00000353479 SLC5A5Q92911 643 aa15.7■□□□□ 0.1
COL17A1-201ENST00000353479 SARS2Q9NP81 518 aaKnown RBP15.7■□□□□ 0.1
COL17A1-201ENST00000353479 SHPRHQ149N8 1683 aa15.7■□□□□ 0.1
COL17A1-201ENST00000353479 FAM200BP0CF97 657 aa15.7■□□□□ 0.1
COL17A1-201ENST00000353479 RAD51Q06609 339 aa15.7■□□□□ 0.1
COL17A1-201ENST00000353479 DHX34Q14147 1143 aaKnown RBP15.7■□□□□ 0.1
COL17A1-201ENST00000353479 MAP3K21Q5TCX8 1036 aa15.7■□□□□ 0.1
COL17A1-201ENST00000353479 CATSPERGQ6ZRH7 1159 aa15.7■□□□□ 0.1
COL17A1-201ENST00000353479 PRAMEP78395 509 aa15.7■□□□□ 0.1
COL17A1-201ENST00000353479 PAN2Q504Q3 1202 aaKnown RBP15.7■□□□□ 0.1
COL17A1-201ENST00000353479 TTI2Q6NXR4 508 aa15.7■□□□□ 0.1
COL17A1-201ENST00000353479 SPDYE1Q8NFV5 336 aaPredicted RBP15.7■□□□□ 0.1
COL17A1-201ENST00000353479 OR6P1Q8NGX9 317 aa15.7■□□□□ 0.1
COL17A1-201ENST00000353479 ATL2Q8NHH9 583 aa15.7■□□□□ 0.1
COL17A1-201ENST00000353479 RAPGEF5Q92565 580 aa15.7■□□□□ 0.1
COL17A1-201ENST00000353479 PPP1R12CQ9BZL4 782 aa15.7■□□□□ 0.1
COL17A1-201ENST00000353479 IRAK4Q9NWZ3 460 aa15.7■□□□□ 0.1
COL17A1-201ENST00000353479 GOLGA8QA0A0J9YX86 632 aa15.7■□□□□ 0.1
COL17A1-201ENST00000353479 GOLGA8OA6NCC3 632 aa15.7■□□□□ 0.1
COL17A1-201ENST00000353479 GOLGA8NF8WBI6 632 aa15.7■□□□□ 0.1
COL17A1-201ENST00000353479 BAG2O95816 211 aa15.7■□□□□ 0.1
COL17A1-201ENST00000353479 TMEM253P0C7T8 217 aa15.7■□□□□ 0.1
COL17A1-201ENST00000353479 TAC1P20366 129 aa15.7■□□□□ 0.1
COL17A1-201ENST00000353479 COMTP21964 271 aa15.7■□□□□ 0.1
COL17A1-201ENST00000353479 EVX2Q03828 476 aa15.7■□□□□ 0.1
COL17A1-201ENST00000353479 DRP2Q13474 957 aa15.7■□□□□ 0.1
COL17A1-201ENST00000353479 FRA10AC1Q70Z53 315 aa15.7■□□□□ 0.1
COL17A1-201ENST00000353479 SRRM1Q8IYB3 904 aaKnown RBP15.7■□□□□ 0.1
COL17A1-201ENST00000353479 ABHD16BQ9H3Z7 469 aa15.7■□□□□ 0.1
COL17A1-201ENST00000353479 VTA1Q9NP79 307 aa15.7■□□□□ 0.1
COL17A1-201ENST00000353479 NAGPAQ9UK23 515 aa15.7■□□□□ 0.1
COL17A1-201ENST00000353479 ANKRD26Q9UPS8 1709 aa15.7■□□□□ 0.1
COL17A1-201ENST00000353479 EEF2KO00418 725 aaKnown RBP15.69■□□□□ 0.1
COL17A1-201ENST00000353479 ATP9BO43861 1147 aa15.69■□□□□ 0.1
COL17A1-201ENST00000353479 TLK2Q86UE8 772 aa15.69■□□□□ 0.1
COL17A1-201ENST00000353479 RASSF3Q86WH2 238 aa15.69■□□□□ 0.1
COL17A1-201ENST00000353479 USP33Q8TEY7 942 aa15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms