RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 ANO7Q6IWH7 933 aa16.87■□□□□ 0.29
HMGA1-202ENST00000347617 IRGCQ6NXR0 463 aa16.87■□□□□ 0.29
HMGA1-202ENST00000347617 ANKRD42Q8N9B4 389 aa16.87■□□□□ 0.29
HMGA1-202ENST00000347617 ZNF398Q8TD17 642 aa16.87■□□□□ 0.29
HMGA1-202ENST00000347617 GJA10Q969M2 543 aa16.87■□□□□ 0.29
HMGA1-202ENST00000347617 DCLRE1BQ9H816 532 aa16.87■□□□□ 0.29
HMGA1-202ENST00000347617 PPCSQ9HAB8 311 aa16.87■□□□□ 0.29
HMGA1-202ENST00000347617 SENP1Q9P0U3 644 aa16.87■□□□□ 0.29
HMGA1-202ENST00000347617 ZNF214Q9UL59 606 aaPredicted RBP16.87■□□□□ 0.29
HMGA1-202ENST00000347617 FRMD4BQ9Y2L6 1034 aa16.87■□□□□ 0.29
HMGA1-202ENST00000347617 PCDHB13Q9Y5F0 798 aa16.87■□□□□ 0.29
HMGA1-202ENST00000347617 PAPPA2Q9BXP8 1791 aa16.87■□□□□ 0.29
HMGA1-202ENST00000347617 IQCA1LA6NCM1 817 aa16.87■□□□□ 0.29
HMGA1-202ENST00000347617 FSCN2O14926 492 aa16.87■□□□□ 0.29
HMGA1-202ENST00000347617 TAC1P20366 129 aa16.87■□□□□ 0.29
HMGA1-202ENST00000347617 RAD23BP54727 409 aa16.87■□□□□ 0.29
HMGA1-202ENST00000347617 RPS6P62753 249 aaKnown RBP16.87■□□□□ 0.29
HMGA1-202ENST00000347617 MYL7Q01449 175 aa16.87■□□□□ 0.29
HMGA1-202ENST00000347617 CETN1Q12798 172 aa16.87■□□□□ 0.29
HMGA1-202ENST00000347617 DGKZQ13574 1117 aa16.87■□□□□ 0.29
HMGA1-202ENST00000347617 SIX1Q15475 284 aaPredicted RBP16.87■□□□□ 0.29
HMGA1-202ENST00000347617 POTEGQ6S5H5 508 aa16.87■□□□□ 0.29
HMGA1-202ENST00000347617 SAMD1Q6SPF0 538 aaPredicted RBP16.87■□□□□ 0.29
HMGA1-202ENST00000347617 RNF207Q6ZRF8 634 aa16.87■□□□□ 0.29
HMGA1-202ENST00000347617 HS2ST1Q7LGA3 356 aa16.87■□□□□ 0.29
HMGA1-202ENST00000347617 CCDC25Q86WR0 208 aa16.87■□□□□ 0.29
HMGA1-202ENST00000347617 ANKRD13AQ8IZ07 590 aa16.87■□□□□ 0.29
HMGA1-202ENST00000347617 UHMK1Q8TAS1 419 aaKnown RBP16.87■□□□□ 0.29
HMGA1-202ENST00000347617 TRAPPC9Q96Q05 1148 aa16.87■□□□□ 0.29
HMGA1-202ENST00000347617 TEX13BQ9BXU2 312 aa16.87■□□□□ 0.29
HMGA1-202ENST00000347617 TLE6Q9H808 572 aa16.87■□□□□ 0.29
HMGA1-202ENST00000347617 SAR1AQ9NR31 198 aa16.87■□□□□ 0.29
HMGA1-202ENST00000347617 COL20A1Q9P218 1284 aa16.87■□□□□ 0.29
HMGA1-202ENST00000347617 STOML1Q9UBI4 398 aa16.87■□□□□ 0.29
HMGA1-202ENST00000347617 ASB3Q9Y575 518 aa16.87■□□□□ 0.29
HMGA1-202ENST00000347617 MAFGO15525 162 aa16.86■□□□□ 0.29
HMGA1-202ENST00000347617 GAS7O60861 476 aa16.86■□□□□ 0.29
HMGA1-202ENST00000347617 GAS8O95995 478 aa16.86■□□□□ 0.29
HMGA1-202ENST00000347617 COMTP21964 271 aa16.86■□□□□ 0.29
HMGA1-202ENST00000347617 CGB2Q6NT52 195 aa16.86■□□□□ 0.29
HMGA1-202ENST00000347617 CHADLQ6NUI6 762 aa16.86■□□□□ 0.29
HMGA1-202ENST00000347617 ERO1BQ86YB8 467 aa16.86■□□□□ 0.29
HMGA1-202ENST00000347617 GALNT15Q8N3T1 639 aa16.86■□□□□ 0.29
HMGA1-202ENST00000347617 UTP4Q969X6 686 aaKnown RBP16.86■□□□□ 0.29
HMGA1-202ENST00000347617 LRRC37BQ96QE4 947 aa16.86■□□□□ 0.29
HMGA1-202ENST00000347617 EIF2AK1Q9BQI3 630 aaKnown RBP16.86■□□□□ 0.29
HMGA1-202ENST00000347617 ZNF577Q9BSK1 485 aa16.86■□□□□ 0.29
HMGA1-202ENST00000347617 TRAIPQ9BWF2 469 aa16.86■□□□□ 0.29
HMGA1-202ENST00000347617 TEKT3Q9BXF9 490 aa16.86■□□□□ 0.29
HMGA1-202ENST00000347617 PAPOLBQ9NRJ5 636 aaKnown RBP16.86■□□□□ 0.29
HMGA1-202ENST00000347617 SEPT11Q9NVA2 429 aaKnown RBP16.86■□□□□ 0.29
HMGA1-202ENST00000347617 UVRAGQ9P2Y5 699 aa16.86■□□□□ 0.29
HMGA1-202ENST00000347617 GGT7Q9UJ14 662 aa16.86■□□□□ 0.29
HMGA1-202ENST00000347617 RBBP6Q7Z6E9 1792 aaKnown RBP16.86■□□□□ 0.29
HMGA1-202ENST00000347617 SCN4AP35499 1836 aa16.86■□□□□ 0.29
HMGA1-202ENST00000347617 EME2A4GXA9 379 aaPredicted RBP16.85■□□□□ 0.29
HMGA1-202ENST00000347617 FAM47DPA6NHR8 397 aa16.85■□□□□ 0.29
HMGA1-202ENST00000347617 TGFB1I1O43294 461 aa16.85■□□□□ 0.29
HMGA1-202ENST00000347617 THAP12O43422 761 aa16.85■□□□□ 0.29
HMGA1-202ENST00000347617 SMIM24O75264 130 aa16.85■□□□□ 0.29
HMGA1-202ENST00000347617 FTLP02792 175 aaPredicted RBP16.85■□□□□ 0.29
HMGA1-202ENST00000347617 STAT3P40763 770 aa16.85■□□□□ 0.29
HMGA1-202ENST00000347617 INHBEP58166 350 aa16.85■□□□□ 0.29
HMGA1-202ENST00000347617 MGAT5Q09328 741 aa16.85■□□□□ 0.29
HMGA1-202ENST00000347617 SLC9A9Q8IVB4 645 aa16.85■□□□□ 0.29
HMGA1-202ENST00000347617 RBBP8NLQ8NC74 664 aaPredicted RBP16.85■□□□□ 0.29
HMGA1-202ENST00000347617 DNAJC9Q8WXX5 260 aa16.85■□□□□ 0.29
HMGA1-202ENST00000347617 KRT35Q92764 455 aa16.85■□□□□ 0.29
HMGA1-202ENST00000347617 NUDCD1Q96RS6 583 aa16.85■□□□□ 0.29
HMGA1-202ENST00000347617 FAM167BQ9BTA0 163 aa16.85■□□□□ 0.29
HMGA1-202ENST00000347617 MYLK2Q9H1R3 596 aa16.85■□□□□ 0.29
HMGA1-202ENST00000347617 AAASQ9NRG9 546 aa16.85■□□□□ 0.29
HMGA1-202ENST00000347617 RNF146Q9NTX7 359 aa16.85■□□□□ 0.29
HMGA1-202ENST00000347617 TBC1D22BQ9NU19 505 aa16.85■□□□□ 0.29
HMGA1-202ENST00000347617 DMAC2Q9NW81 257 aa16.85■□□□□ 0.29
HMGA1-202ENST00000347617 LNPEPQ9UIQ6 1025 aa16.85■□□□□ 0.29
HMGA1-202ENST00000347617 SMG5Q9UPR3 1016 aaKnown RBP16.85■□□□□ 0.29
HMGA1-202ENST00000347617 USP20Q9Y2K6 914 aa16.85■□□□□ 0.29
HMGA1-202ENST00000347617 ENO4A6NNW6 628 aa16.84■□□□□ 0.29
HMGA1-202ENST00000347617 ADM5C9JUS6 153 aa16.84■□□□□ 0.29
HMGA1-202ENST00000347617 IPO5O00410 1097 aaKnown RBP16.84■□□□□ 0.29
HMGA1-202ENST00000347617 PRPF4O43172 522 aaKnown RBP eCLIP16.84■□□□□ 0.29
HMGA1-202ENST00000347617 ACSL3O95573 720 aa16.84■□□□□ 0.29
HMGA1-202ENST00000347617 ITGB5P18084 799 aa16.84■□□□□ 0.29
HMGA1-202ENST00000347617 RAB27AP51159 221 aa16.84■□□□□ 0.29
HMGA1-202ENST00000347617 KRT17Q04695 432 aa16.84■□□□□ 0.29
HMGA1-202ENST00000347617 PABPC4Q13310 644 aaKnown RBP eCLIP16.84■□□□□ 0.296e-22■■■■□ 23.3
HMGA1-202ENST00000347617 LBX2Q6XYB7 198 aa16.84■□□□□ 0.29
HMGA1-202ENST00000347617 FAM13CQ8NE31 585 aa16.84■□□□□ 0.29
HMGA1-202ENST00000347617 CHST13Q8NET6 341 aa16.84■□□□□ 0.29
HMGA1-202ENST00000347617 ZBTB10Q96DT7 871 aa16.84■□□□□ 0.29
HMGA1-202ENST00000347617 FZD1Q9UP38 647 aa16.84■□□□□ 0.29
HMGA1-202ENST00000347617 ZMYM2Q9UBW7 1377 aa16.84■□□□□ 0.29
HMGA1-202ENST00000347617 DPPA5A6NC42 116 aa16.84■□□□□ 0.29
HMGA1-202ENST00000347617 SPDYE5A6NIY4 337 aa16.84■□□□□ 0.29
HMGA1-202ENST00000347617 NDC80O14777 642 aa16.84■□□□□ 0.29
HMGA1-202ENST00000347617 STAM2O75886 525 aa16.84■□□□□ 0.29
HMGA1-202ENST00000347617 SLITRK3O94933 977 aa16.84■□□□□ 0.29
HMGA1-202ENST00000347617 FAM13AO94988 1023 aa16.84■□□□□ 0.29
HMGA1-202ENST00000347617 CYP1A2P05177 515 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms