RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 PLEKHG1Q9ULL1 1385 aa9.13□□□□□ -0.95
RTN3-202ENST00000339997 RTN2O75298 545 aa9.13□□□□□ -0.95
RTN3-202ENST00000339997 CRKP46108 304 aa9.13□□□□□ -0.95
RTN3-202ENST00000339997 AARSP49588 968 aaKnown RBP eCLIP9.13□□□□□ -0.95
RTN3-202ENST00000339997 USP11P51784 963 aa9.13□□□□□ -0.95
RTN3-202ENST00000339997 GPSM2P81274 684 aa9.13□□□□□ -0.95
RTN3-202ENST00000339997 PLOD1Q02809 727 aaPredicted RBP9.13□□□□□ -0.95
RTN3-202ENST00000339997 CAV1Q03135 178 aa9.13□□□□□ -0.95
RTN3-202ENST00000339997 SNRNP48Q6IEG0 339 aaKnown RBP9.13□□□□□ -0.95
RTN3-202ENST00000339997 C11orf74Q86VG3 221 aa9.13□□□□□ -0.95
RTN3-202ENST00000339997 TTC13Q8NBP0 860 aa9.13□□□□□ -0.95
RTN3-202ENST00000339997 SPATA18Q8TC71 538 aa9.13□□□□□ -0.95
RTN3-202ENST00000339997 POP1Q99575 1024 aaKnown RBP9.13□□□□□ -0.95
RTN3-202ENST00000339997 EGFL8Q99944 293 aa9.13□□□□□ -0.95
RTN3-202ENST00000339997 STK33Q9BYT3 514 aa9.13□□□□□ -0.95
RTN3-202ENST00000339997 USP20Q9Y2K6 914 aa9.13□□□□□ -0.95
RTN3-202ENST00000339997 ZHX2Q9Y6X8 837 aa9.13□□□□□ -0.95
RTN3-202ENST00000339997 TRIM49D1C9J1S8 452 aa9.13□□□□□ -0.95
RTN3-202ENST00000339997 PJA2O43164 708 aa9.13□□□□□ -0.95
RTN3-202ENST00000339997 UPP2O95045 317 aa9.13□□□□□ -0.95
RTN3-202ENST00000339997 TAC1P20366 129 aa9.13□□□□□ -0.95
RTN3-202ENST00000339997 CCND2P30279 289 aa9.13□□□□□ -0.95
RTN3-202ENST00000339997 OTUD4Q01804 1114 aaKnown RBP9.13□□□□□ -0.95
RTN3-202ENST00000339997 TAGAPQ8N103 731 aa9.13□□□□□ -0.95
RTN3-202ENST00000339997 CLEC4FQ8N1N0 589 aa9.13□□□□□ -0.95
RTN3-202ENST00000339997 AGGF1Q8N302 714 aaeCLIP9.13□□□□□ -0.95
RTN3-202ENST00000339997 DIS3LQ8TF46 1054 aaKnown RBP9.13□□□□□ -0.95
RTN3-202ENST00000339997 ULK4Q96C45 1275 aa9.13□□□□□ -0.95
RTN3-202ENST00000339997 GRAMD1AQ96CP6 724 aa9.13□□□□□ -0.95
RTN3-202ENST00000339997 OLFM3Q96PB7 478 aa9.13□□□□□ -0.95
RTN3-202ENST00000339997 PIF1Q9H611 641 aa9.13□□□□□ -0.95
RTN3-202ENST00000339997 GIMAP4Q9NUV9 329 aa9.13□□□□□ -0.95
RTN3-202ENST00000339997 IP6K2Q9UHH9 426 aa9.13□□□□□ -0.95
RTN3-202ENST00000339997 ATP7AQ04656 1500 aa9.12□□□□□ -0.95
RTN3-202ENST00000339997 ZNF335Q9H4Z2 1342 aaPredicted RBP9.12□□□□□ -0.95
RTN3-202ENST00000339997 A8MXQ7 604 aa9.12□□□□□ -0.95
RTN3-202ENST00000339997 DFFAO00273 331 aa9.12□□□□□ -0.95
RTN3-202ENST00000339997 OPLAHO14841 1288 aa9.12□□□□□ -0.95
RTN3-202ENST00000339997 SLC37A4O43826 429 aa9.12□□□□□ -0.95
RTN3-202ENST00000339997 SNX2O60749 519 aa9.12□□□□□ -0.95
RTN3-202ENST00000339997 GFAPP14136 432 aa9.12□□□□□ -0.95
RTN3-202ENST00000339997 DRP2Q13474 957 aa9.12□□□□□ -0.95
RTN3-202ENST00000339997 ZCWPW2Q504Y3 356 aa9.12□□□□□ -0.95
RTN3-202ENST00000339997 PRAMEF18Q5VWM3 479 aa9.12□□□□□ -0.95
RTN3-202ENST00000339997 DCAF15Q66K64 600 aa9.12□□□□□ -0.95
RTN3-202ENST00000339997 CCDC81Q6ZN84 652 aa9.12□□□□□ -0.95
RTN3-202ENST00000339997 TMEM179Q6ZVK1 233 aa9.12□□□□□ -0.95
RTN3-202ENST00000339997 FRA10AC1Q70Z53 315 aa9.12□□□□□ -0.95
RTN3-202ENST00000339997 NLRP9Q7RTR0 991 aa9.12□□□□□ -0.95
RTN3-202ENST00000339997 FRMD5Q7Z6J6 570 aa9.12□□□□□ -0.95
RTN3-202ENST00000339997 ABI1Q8IZP0 508 aa9.12□□□□□ -0.95
RTN3-202ENST00000339997 RNF149Q8NC42 400 aa9.12□□□□□ -0.95
RTN3-202ENST00000339997 NSUN4Q96CB9 384 aaKnown RBP9.12□□□□□ -0.95
RTN3-202ENST00000339997 PABPC3Q9H361 631 aaKnown RBP9.12□□□□□ -0.95
RTN3-202ENST00000339997 MANSC1Q9H8J5 431 aa9.12□□□□□ -0.95
RTN3-202ENST00000339997 ATP6V0A4Q9HBG4 840 aa9.12□□□□□ -0.95
RTN3-202ENST00000339997 ARMCX1Q9P291 453 aa9.12□□□□□ -0.95
RTN3-202ENST00000339997 PACSIN3Q9UKS6 424 aa9.12□□□□□ -0.95
RTN3-202ENST00000339997 TRIM33Q9UPN9 1127 aa9.12□□□□□ -0.95
RTN3-202ENST00000339997 CBX6O95503 412 aa9.12□□□□□ -0.95
RTN3-202ENST00000339997 CALB1P05937 261 aa9.12□□□□□ -0.95
RTN3-202ENST00000339997 P4HBP07237 508 aaKnown RBP9.12□□□□□ -0.95
RTN3-202ENST00000339997 KRT7P08729 469 aa9.12□□□□□ -0.95
RTN3-202ENST00000339997 SERPINB5P36952 375 aa9.12□□□□□ -0.95
RTN3-202ENST00000339997 TMEM62Q0P6H9 643 aa9.12□□□□□ -0.95
RTN3-202ENST00000339997 GRAPQ13588 217 aa9.12□□□□□ -0.95
RTN3-202ENST00000339997 PCSK7Q16549 785 aa9.12□□□□□ -0.95
RTN3-202ENST00000339997 TRIM60Q495X7 471 aa9.12□□□□□ -0.95
RTN3-202ENST00000339997 ACBD5Q5T8D3 534 aaPredicted RBP9.12□□□□□ -0.95
RTN3-202ENST00000339997 KLHDC7AQ5VTJ3 777 aa9.12□□□□□ -0.95
RTN3-202ENST00000339997 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.12□□□□□ -0.95
RTN3-202ENST00000339997 UBA3Q8TBC4 463 aa9.12□□□□□ -0.95
RTN3-202ENST00000339997 GRAPLQ8TC17 118 aaPredicted RBP9.12□□□□□ -0.95
RTN3-202ENST00000339997 GIPC2Q8TF65 315 aa9.12□□□□□ -0.95
RTN3-202ENST00000339997 FAM20AQ96MK3 541 aa9.12□□□□□ -0.95
RTN3-202ENST00000339997 NR1H4Q96RI1 486 aaPredicted RBP9.12□□□□□ -0.95
RTN3-202ENST00000339997 TASP1Q9H6P5 420 aa9.12□□□□□ -0.95
RTN3-202ENST00000339997 EXOSC4Q9NPD3 245 aaKnown RBP9.12□□□□□ -0.95
RTN3-202ENST00000339997 GPRC5CQ9NQ84 441 aa9.12□□□□□ -0.95
RTN3-202ENST00000339997 BATF3Q9NR55 127 aa9.12□□□□□ -0.95
RTN3-202ENST00000339997 PDXKO00764 312 aa9.12□□□□□ -0.95
RTN3-202ENST00000339997 ITIH2P19823 946 aa9.12□□□□□ -0.95
RTN3-202ENST00000339997 OSBPP22059 807 aa9.12□□□□□ -0.95
RTN3-202ENST00000339997 GLRBP48167 497 aa9.12□□□□□ -0.95
RTN3-202ENST00000339997 ZNF200P98182 395 aaPredicted RBP9.12□□□□□ -0.95
RTN3-202ENST00000339997 MXD4Q14582 209 aaPredicted RBP9.12□□□□□ -0.95
RTN3-202ENST00000339997 IMPG1Q17R60 797 aa9.12□□□□□ -0.95
RTN3-202ENST00000339997 CEP55Q53EZ4 464 aa9.12□□□□□ -0.95
RTN3-202ENST00000339997 ZC3H12BQ5HYM0 836 aaKnown RBP9.12□□□□□ -0.95
RTN3-202ENST00000339997 C12orf60Q5U649 245 aa9.12□□□□□ -0.95
RTN3-202ENST00000339997 BBS5Q8N3I7 341 aa9.12□□□□□ -0.95
RTN3-202ENST00000339997 TPCN2Q8NHX9 752 aa9.12□□□□□ -0.95
RTN3-202ENST00000339997 NAF1Q96HR8 494 aaKnown RBP9.12□□□□□ -0.95
RTN3-202ENST00000339997 PAIP2BQ9ULR5 123 aaKnown RBP9.12□□□□□ -0.95
RTN3-202ENST00000339997 BBOX1O75936 387 aa9.11□□□□□ -0.95
RTN3-202ENST00000339997 MYBL2P10244 700 aa9.11□□□□□ -0.95
RTN3-202ENST00000339997 TFE3P19532 575 aaPredicted RBP9.11□□□□□ -0.95
RTN3-202ENST00000339997 SNRNP35Q16560 246 aaKnown RBP9.11□□□□□ -0.95
RTN3-202ENST00000339997 KIAA1841Q6NSI8 718 aa9.11□□□□□ -0.95
RTN3-202ENST00000339997 BZW1Q7L1Q6 419 aaKnown RBP9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms