RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 ALDH3A1P30838 453 aa12.65□□□□□ -0.38
USP1-201ENST00000339950 MSH2P43246 934 aa12.65□□□□□ -0.38
USP1-201ENST00000339950 DHX34Q14147 1143 aaKnown RBP12.65□□□□□ -0.38
USP1-201ENST00000339950 KRT81Q14533 505 aa12.65□□□□□ -0.38
USP1-201ENST00000339950 ANKRD20A3Q5VUR7 823 aa12.65□□□□□ -0.38
USP1-201ENST00000339950 SNF8Q96H20 258 aa12.65□□□□□ -0.38
USP1-201ENST00000339950 CNOT10Q9H9A5 744 aaKnown RBP12.65□□□□□ -0.38
USP1-201ENST00000339950 ATP6V0A4Q9HBG4 840 aa12.65□□□□□ -0.38
USP1-201ENST00000339950 TBC1D22BQ9NU19 505 aa12.65□□□□□ -0.38
USP1-201ENST00000339950 HAO1Q9UJM8 370 aa12.65□□□□□ -0.38
USP1-201ENST00000339950 AKT3Q9Y243 479 aa12.65□□□□□ -0.38
USP1-201ENST00000339950 NEU2Q9Y3R4 380 aa12.65□□□□□ -0.38
USP1-201ENST00000339950 ROBO3Q96MS0 1386 aa12.65□□□□□ -0.38
USP1-201ENST00000339950 VCAM1P19320 739 aa12.64□□□□□ -0.39
USP1-201ENST00000339950 MAN1A1P33908 653 aa12.64□□□□□ -0.39
USP1-201ENST00000339950 TAS2R40P59535 323 aa12.64□□□□□ -0.39
USP1-201ENST00000339950 PSMC1P62191 440 aaKnown RBP12.64□□□□□ -0.39
USP1-201ENST00000339950 IL9RQ01113 521 aa12.64□□□□□ -0.39
USP1-201ENST00000339950 CDR2Q01850 454 aa12.64□□□□□ -0.39
USP1-201ENST00000339950 KIF22Q14807 665 aa12.64□□□□□ -0.39
USP1-201ENST00000339950 GJC2Q5T442 439 aaPredicted RBP12.64□□□□□ -0.39
USP1-201ENST00000339950 GPAT2Q6NUI2 795 aa12.64□□□□□ -0.39
USP1-201ENST00000339950 CCDC60Q8IWA6 550 aaPredicted RBP12.64□□□□□ -0.39
USP1-201ENST00000339950 RNF169Q8NCN4 708 aa12.64□□□□□ -0.39
USP1-201ENST00000339950 OR5B17Q8NGF7 314 aa12.64□□□□□ -0.39
USP1-201ENST00000339950 AGO4Q9HCK5 861 aaKnown RBP12.64□□□□□ -0.39
USP1-201ENST00000339950 GEMIN8Q9NWZ8 242 aaKnown RBP12.64□□□□□ -0.39
USP1-201ENST00000339950 SLC9A2Q9UBY0 812 aa12.64□□□□□ -0.39
USP1-201ENST00000339950 SUGT1Q9Y2Z0 365 aa12.64□□□□□ -0.39
USP1-201ENST00000339950 PRKCIP41743 596 aa12.64□□□□□ -0.39
USP1-201ENST00000339950 ACTR2P61160 394 aa12.64□□□□□ -0.39
USP1-201ENST00000339950 FASTKD3Q14CZ7 662 aaKnown RBP12.64□□□□□ -0.39
USP1-201ENST00000339950 ANGEL2Q5VTE6 544 aaKnown RBP12.64□□□□□ -0.39
USP1-201ENST00000339950 KCNV1Q6PIU1 500 aa12.64□□□□□ -0.39
USP1-201ENST00000339950 LRIG3Q6UXM1 1119 aa12.64□□□□□ -0.39
USP1-201ENST00000339950 DNPEPQ9ULA0 475 aa12.64□□□□□ -0.39
USP1-201ENST00000339950 USH1CQ9Y6N9 552 aa12.64□□□□□ -0.39
USP1-201ENST00000339950 PRRC2BQ5JSZ5 2229 aaKnown RBP12.64□□□□□ -0.39
USP1-201ENST00000339950 PFASO15067 1338 aa12.64□□□□□ -0.39
USP1-201ENST00000339950 ENTPD3O75355 529 aa12.64□□□□□ -0.39
USP1-201ENST00000339950 MAGEA4P43358 317 aa12.64□□□□□ -0.39
USP1-201ENST00000339950 PPP2R5EQ16537 467 aa12.64□□□□□ -0.39
USP1-201ENST00000339950 MFSD7Q6UXD7 560 aa12.64□□□□□ -0.39
USP1-201ENST00000339950 ANO5Q75V66 913 aa12.64□□□□□ -0.39
USP1-201ENST00000339950 CERKQ8TCT0 537 aa12.64□□□□□ -0.39
USP1-201ENST00000339950 DNAJC5Q9H3Z4 198 aa12.64□□□□□ -0.39
USP1-201ENST00000339950 FAM49BQ9NUQ9 324 aa12.64□□□□□ -0.39
USP1-201ENST00000339950 NAALADL1Q9UQQ1 740 aa12.64□□□□□ -0.39
USP1-201ENST00000339950 CST8O60676 142 aa12.63□□□□□ -0.39
USP1-201ENST00000339950 VIL1P09327 827 aaKnown RBP12.63□□□□□ -0.39
USP1-201ENST00000339950 ATP5DP30049 168 aa12.63□□□□□ -0.39
USP1-201ENST00000339950 TNFSF9P41273 254 aa12.63□□□□□ -0.39
USP1-201ENST00000339950 MYL6P60660 151 aa12.63□□□□□ -0.39
USP1-201ENST00000339950 LRRC36Q1X8D7 754 aa12.63□□□□□ -0.39
USP1-201ENST00000339950 ANKRD20A8PQ5CZ79 823 aa12.63□□□□□ -0.39
USP1-201ENST00000339950 NAIF1Q69YI7 327 aaPredicted RBP12.63□□□□□ -0.39
USP1-201ENST00000339950 SPATA21Q7Z572 469 aa12.63□□□□□ -0.39
USP1-201ENST00000339950 FAM71DQ8N9W8 422 aa12.63□□□□□ -0.39
USP1-201ENST00000339950 CEP41Q9BYV8 373 aa12.63□□□□□ -0.39
USP1-201ENST00000339950 TRABDQ9H4I3 376 aa12.63□□□□□ -0.39
USP1-201ENST00000339950 METTL5Q9NRN9 209 aaKnown RBP12.63□□□□□ -0.39
USP1-201ENST00000339950 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.63□□□□□ -0.39
USP1-201ENST00000339950 NUP188Q5SRE5 1749 aa12.63□□□□□ -0.39
USP1-201ENST00000339950 PARP4Q9UKK3 1724 aaKnown RBP12.63□□□□□ -0.39
USP1-201ENST00000339950 ACAD10Q6JQN1 1059 aa12.63□□□□□ -0.39
USP1-201ENST00000339950 GRK7Q8WTQ7 553 aa12.63□□□□□ -0.39
USP1-201ENST00000339950 RUBCNQ92622 972 aa12.63□□□□□ -0.39
USP1-201ENST00000339950 UBN1Q9NPG3 1134 aa12.63□□□□□ -0.39
USP1-201ENST00000339950 ZNF302Q9NR11 478 aa12.63□□□□□ -0.39
USP1-201ENST00000339950 IVNS1ABPQ9Y6Y0 642 aa12.63□□□□□ -0.39
USP1-201ENST00000339950 COL18A1P39060 1754 aa12.63□□□□□ -0.39
USP1-201ENST00000339950 FRMPD4Q14CM0 1322 aa12.63□□□□□ -0.39
USP1-201ENST00000339950 RNF8O76064 485 aa12.63□□□□□ -0.39
USP1-201ENST00000339950 CYP3A7P24462 503 aa12.63□□□□□ -0.39
USP1-201ENST00000339950 CIITAP33076 1130 aa12.63□□□□□ -0.39
USP1-201ENST00000339950 ATXN3P54252 364 aaPredicted RBP12.63□□□□□ -0.39
USP1-201ENST00000339950 AUHQ13825 339 aaKnown RBP12.63□□□□□ -0.39
USP1-201ENST00000339950 ZNF699Q32M78 642 aa12.63□□□□□ -0.39
USP1-201ENST00000339950 ZNF568Q3ZCX4 644 aa12.63□□□□□ -0.39
USP1-201ENST00000339950 DUPD1Q68J44 220 aa12.63□□□□□ -0.39
USP1-201ENST00000339950 ARHGAP27Q6ZUM4 889 aa12.63□□□□□ -0.39
USP1-201ENST00000339950 EXOC3L1Q86VI1 746 aa12.63□□□□□ -0.39
USP1-201ENST00000339950 RHOT1Q8IXI2 618 aa12.63□□□□□ -0.39
USP1-201ENST00000339950 GLIS1Q8NBF1 620 aa12.63□□□□□ -0.39
USP1-201ENST00000339950 ATL2Q8NHH9 583 aa12.63□□□□□ -0.39
USP1-201ENST00000339950 NSUN6Q8TEA1 469 aaKnown RBP12.63□□□□□ -0.39
USP1-201ENST00000339950 OTUD5Q96G74 571 aa12.63□□□□□ -0.39
USP1-201ENST00000339950 MKNK1Q9BUB5 465 aa12.63□□□□□ -0.39
USP1-201ENST00000339950 IDI2Q9BXS1 227 aa12.63□□□□□ -0.39
USP1-201ENST00000339950 ACTR5Q9H9F9 607 aaPredicted RBP12.63□□□□□ -0.39
USP1-201ENST00000339950 TMEM8AQ9HCN3 771 aa12.63□□□□□ -0.39
USP1-201ENST00000339950 CLEC11AQ9Y240 323 aa12.63□□□□□ -0.39
USP1-201ENST00000339950 ICAM1P05362 532 aa12.62□□□□□ -0.39
USP1-201ENST00000339950 CLCN3P51790 818 aa12.62□□□□□ -0.39
USP1-201ENST00000339950 KRT76Q01546 638 aa12.62□□□□□ -0.39
USP1-201ENST00000339950 EMC2Q15006 297 aa12.62□□□□□ -0.39
USP1-201ENST00000339950 PGM5Q15124 567 aa12.62□□□□□ -0.39
USP1-201ENST00000339950 ACCSLQ4AC99 568 aa12.62□□□□□ -0.39
USP1-201ENST00000339950 ARHGEF18Q6ZSZ5 1173 aa12.62□□□□□ -0.39
USP1-201ENST00000339950 TEX2Q8IWB9 1127 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms