RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 CYP11B1P15538 503 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 CD58P19256 250 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 CASQ1P31415 396 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 SSTR3P32745 418 aaPredicted RBP4.45□□□□□ -1.7
MCF2-201ENST00000338585 AP3M2P53677 418 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 NCBP1Q09161 790 aaKnown RBP4.45□□□□□ -1.7
MCF2-201ENST00000338585 MGAT3Q09327 533 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 NFX1Q12986 1120 aaKnown RBP4.45□□□□□ -1.7
MCF2-201ENST00000338585 TRPC3Q13507 836 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 MTFR1Q15390 333 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 SURF1Q15526 300 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 NAB2Q15742 525 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 ZNF699Q32M78 642 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 DCAF4L1Q3SXM0 396 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 ZNF662Q6ZS27 426 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 RPUSD2Q8IZ73 545 aaKnown RBP4.45□□□□□ -1.7
MCF2-201ENST00000338585 ARRDC4Q8NCT1 418 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 LRRN4CLQ8ND94 238 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 C18orf25Q96B23 403 aaPredicted RBP4.45□□□□□ -1.7
MCF2-201ENST00000338585 KIF12Q96FN5 646 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 ANKRD36BP1Q96IX9 119 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 SNX27Q96L92 541 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 CCDC94Q9BW85 323 aaPredicted RBP4.45□□□□□ -1.7
MCF2-201ENST00000338585 TRIM6Q9C030 488 aaPredicted RBP4.45□□□□□ -1.7
MCF2-201ENST00000338585 XRN2Q9H0D6 950 aaKnown RBP eCLIP4.45□□□□□ -1.7
MCF2-201ENST00000338585 NXF1Q9UBU9 619 aaKnown RBP4.45□□□□□ -1.7
MCF2-201ENST00000338585 TUBGCP4Q9UGJ1 667 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 ST3GAL5Q9UNP4 418 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 DAAM1Q9Y4D1 1078 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 FRMPD3Q5JV73 1810 aa4.44□□□□□ -1.7
MCF2-201ENST00000338585 CITO14578 2027 aa4.44□□□□□ -1.7
MCF2-201ENST00000338585 M0QZ92 97 aa4.44□□□□□ -1.7
MCF2-201ENST00000338585 ENC1O14682 589 aa4.44□□□□□ -1.7
MCF2-201ENST00000338585 PJA2O43164 708 aa4.44□□□□□ -1.7
MCF2-201ENST00000338585 RPS6KA5O75582 802 aa4.44□□□□□ -1.7
MCF2-201ENST00000338585 URI1O94763 535 aaPredicted RBP4.44□□□□□ -1.7
MCF2-201ENST00000338585 CFHP08603 1231 aa4.44□□□□□ -1.7
MCF2-201ENST00000338585 WEE2P0C1S8 567 aa4.44□□□□□ -1.7
MCF2-201ENST00000338585 GHRP10912 638 aa4.44□□□□□ -1.7
MCF2-201ENST00000338585 TNFAIP3P21580 790 aa4.44□□□□□ -1.7
MCF2-201ENST00000338585 POLR2BP30876 1174 aaKnown RBP4.44□□□□□ -1.7
MCF2-201ENST00000338585 CD52P31358 61 aa4.44□□□□□ -1.7
MCF2-201ENST00000338585 ASPAP45381 313 aa4.44□□□□□ -1.7
MCF2-201ENST00000338585 RAP1GAPP47736 663 aa4.44□□□□□ -1.7
MCF2-201ENST00000338585 PRMT2P55345 433 aa4.44□□□□□ -1.7
MCF2-201ENST00000338585 FMO1Q01740 532 aa4.44□□□□□ -1.7
MCF2-201ENST00000338585 BMS1Q14692 1282 aaKnown RBP4.44□□□□□ -1.7
MCF2-201ENST00000338585 TMEM132DQ14C87 1099 aa4.44□□□□□ -1.7
MCF2-201ENST00000338585 ARHGEF6Q15052 776 aa4.44□□□□□ -1.7
MCF2-201ENST00000338585 SGSM1Q2NKQ1 1148 aa4.44□□□□□ -1.7
MCF2-201ENST00000338585 TRIM71Q2Q1W2 868 aaKnown RBP4.44□□□□□ -1.7
MCF2-201ENST00000338585 ZNF394Q53GI3 561 aa4.44□□□□□ -1.7
MCF2-201ENST00000338585 TWF2Q6IBS0 349 aaKnown RBP4.44□□□□□ -1.7
MCF2-201ENST00000338585 TMEM270Q6UE05 265 aa4.44□□□□□ -1.7
MCF2-201ENST00000338585 RSPH3Q86UC2 560 aa4.44□□□□□ -1.7
MCF2-201ENST00000338585 SMG8Q8ND04 991 aaKnown RBP4.44□□□□□ -1.7
MCF2-201ENST00000338585 DDX1Q92499 740 aaKnown RBP4.44□□□□□ -1.7
MCF2-201ENST00000338585 TSC1Q92574 1164 aa4.44□□□□□ -1.7
MCF2-201ENST00000338585 GLT1D1Q96MS3 346 aa4.44□□□□□ -1.7
MCF2-201ENST00000338585 BEGAINQ9BUH8 593 aa4.44□□□□□ -1.7
MCF2-201ENST00000338585 IMPG2Q9BZV3 1241 aa4.44□□□□□ -1.7
MCF2-201ENST00000338585 SDCBP2Q9H190 292 aa4.44□□□□□ -1.7
MCF2-201ENST00000338585 ASB7Q9H672 318 aa4.44□□□□□ -1.7
MCF2-201ENST00000338585 NOD1Q9Y239 953 aa4.44□□□□□ -1.7
MCF2-201ENST00000338585 PTPN22Q9Y2R2 807 aa4.44□□□□□ -1.7
MCF2-201ENST00000338585 IPPQ9Y573 584 aa4.44□□□□□ -1.7
MCF2-201ENST00000338585 PCDHB4Q9Y5E5 795 aa4.44□□□□□ -1.7
MCF2-201ENST00000338585 MOXD2PA6NHM9 499 aa4.44□□□□□ -1.7
MCF2-201ENST00000338585 MGEA5O60502 916 aa4.44□□□□□ -1.7
MCF2-201ENST00000338585 ATP1A1P05023 1023 aaKnown RBP4.44□□□□□ -1.7
MCF2-201ENST00000338585 CCDC172P0C7W6 258 aa4.44□□□□□ -1.7
MCF2-201ENST00000338585 ABCB4P21439 1286 aa4.44□□□□□ -1.7
MCF2-201ENST00000338585 IBSPP21815 317 aaPredicted RBP4.44□□□□□ -1.7
MCF2-201ENST00000338585 AXLP30530 894 aa4.44□□□□□ -1.7
MCF2-201ENST00000338585 PDE6CP51160 858 aa4.44□□□□□ -1.7
MCF2-201ENST00000338585 AFF1P51825 1210 aaKnown RBP4.44□□□□□ -1.7
MCF2-201ENST00000338585 GALCP54803 685 aa4.44□□□□□ -1.7
MCF2-201ENST00000338585 CDH8P55286 799 aa4.44□□□□□ -1.7
MCF2-201ENST00000338585 CDR2Q01850 454 aa4.44□□□□□ -1.7
MCF2-201ENST00000338585 ORC1Q13415 861 aa4.44□□□□□ -1.7
MCF2-201ENST00000338585 PCBP1Q15365 356 aaKnown RBP eCLIP4.44□□□□□ -1.7
MCF2-201ENST00000338585 KYAT1Q16773 422 aa4.44□□□□□ -1.7
MCF2-201ENST00000338585 WDR72Q3MJ13 1102 aa4.44□□□□□ -1.7
MCF2-201ENST00000338585 FBXO47Q5MNV8 452 aa4.44□□□□□ -1.7
MCF2-201ENST00000338585 ZNF618Q5T7W0 954 aa4.44□□□□□ -1.7
MCF2-201ENST00000338585 ALKAL1Q6UXT8 129 aa4.44□□□□□ -1.7
MCF2-201ENST00000338585 ENOSF1Q7L5Y1 443 aa4.44□□□□□ -1.7
MCF2-201ENST00000338585 RPAINQ86UA6 219 aa4.44□□□□□ -1.7
MCF2-201ENST00000338585 VPS36Q86VN1 386 aa4.44□□□□□ -1.7
MCF2-201ENST00000338585 UBR7Q8N806 425 aa4.44□□□□□ -1.7
MCF2-201ENST00000338585 RBBP8NLQ8NC74 664 aaPredicted RBP4.44□□□□□ -1.7
MCF2-201ENST00000338585 SECISBP2LQ93073 1101 aaKnown RBP4.44□□□□□ -1.7
MCF2-201ENST00000338585 ARHGEF26Q96DR7 871 aa4.44□□□□□ -1.7
MCF2-201ENST00000338585 ZFP42Q96MM3 310 aa4.44□□□□□ -1.7
MCF2-201ENST00000338585 DEFB118Q96PH6 123 aa4.44□□□□□ -1.7
MCF2-201ENST00000338585 ZSWIM1Q9BR11 485 aa4.44□□□□□ -1.7
MCF2-201ENST00000338585 TSGA10Q9BZW7 698 aa4.44□□□□□ -1.7
MCF2-201ENST00000338585 NIF3L1Q9GZT8 377 aa4.44□□□□□ -1.7
MCF2-201ENST00000338585 GOLPH3Q9H4A6 298 aa4.44□□□□□ -1.7
MCF2-201ENST00000338585 SMYD3Q9H7B4 428 aa4.44□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms