RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 KIF28PB7ZC32 967 aa13.24□□□□□ -0.29
SDC3-201ENST00000336798 HIC1Q14526 733 aa13.24□□□□□ -0.29
SDC3-201ENST00000336798 ARMC6Q6NXE6 501 aa13.24□□□□□ -0.29
SDC3-201ENST00000336798 ARL10Q8N8L6 244 aa13.24□□□□□ -0.29
SDC3-201ENST00000336798 KLF6Q99612 283 aaPredicted RBP13.24□□□□□ -0.29
SDC3-201ENST00000336798 BRD8Q9H0E9 1235 aa13.24□□□□□ -0.29
SDC3-201ENST00000336798 PSMD7P51665 324 aa13.24□□□□□ -0.29
SDC3-201ENST00000336798 NAA30Q147X3 362 aaPredicted RBP13.24□□□□□ -0.29
SDC3-201ENST00000336798 MTF1Q14872 753 aa13.24□□□□□ -0.29
SDC3-201ENST00000336798 RARS2Q5T160 578 aaKnown RBP13.24□□□□□ -0.29
SDC3-201ENST00000336798 IFNLR1Q8IU57 520 aaPredicted RBP13.24□□□□□ -0.29
SDC3-201ENST00000336798 SHCBP1Q8NEM2 672 aa13.24□□□□□ -0.29
SDC3-201ENST00000336798 SCFD1Q8WVM8 642 aa13.24□□□□□ -0.29
SDC3-201ENST00000336798 C18orf8Q96DM3 657 aa13.24□□□□□ -0.29
SDC3-201ENST00000336798 PLEKHA8Q96JA3 519 aa13.24□□□□□ -0.29
SDC3-201ENST00000336798 TRABDQ9H4I3 376 aa13.24□□□□□ -0.29
SDC3-201ENST00000336798 ZCCHC17Q9NP64 241 aaKnown RBP13.24□□□□□ -0.29
SDC3-201ENST00000336798 STOML1Q9UBI4 398 aa13.24□□□□□ -0.29
SDC3-201ENST00000336798 LIMA1Q9UHB6 759 aaKnown RBP13.24□□□□□ -0.29
SDC3-201ENST00000336798 UNC13AQ9UPW8 1703 aa13.24□□□□□ -0.29
SDC3-201ENST00000336798 NPHP4O75161 1426 aaPredicted RBP13.24□□□□□ -0.29
SDC3-201ENST00000336798 KCNQ2O43526 872 aa13.24□□□□□ -0.29
SDC3-201ENST00000336798 ATP5HO75947 161 aa13.24□□□□□ -0.29
SDC3-201ENST00000336798 BAATQ14032 418 aaPredicted RBP13.24□□□□□ -0.29
SDC3-201ENST00000336798 PODNQ7Z5L7 613 aa13.24□□□□□ -0.29
SDC3-201ENST00000336798 TEX9Q8N6V9 391 aa13.24□□□□□ -0.29
SDC3-201ENST00000336798 RNPC3Q96LT9 517 aaKnown RBP13.24□□□□□ -0.29
SDC3-201ENST00000336798 NARFQ9UHQ1 456 aa13.24□□□□□ -0.29
SDC3-201ENST00000336798 UBXN8O00124 270 aa13.24□□□□□ -0.29
SDC3-201ENST00000336798 AVPR1AP37288 418 aa13.24□□□□□ -0.29
SDC3-201ENST00000336798 PLD3Q8IV08 490 aa13.24□□□□□ -0.29
SDC3-201ENST00000336798 MIER2Q8N344 545 aa13.24□□□□□ -0.29
SDC3-201ENST00000336798 ERLEC1Q96DZ1 483 aa13.24□□□□□ -0.29
SDC3-201ENST00000336798 ADAM21Q9UKJ8 722 aa13.24□□□□□ -0.29
SDC3-201ENST00000336798 FAM47DPA6NHR8 397 aa13.24□□□□□ -0.29
SDC3-201ENST00000336798 AGRPO00253 132 aa13.24□□□□□ -0.29
SDC3-201ENST00000336798 AIM2O14862 343 aa13.24□□□□□ -0.29
SDC3-201ENST00000336798 TRAPPC3O43617 180 aa13.24□□□□□ -0.29
SDC3-201ENST00000336798 CYTH3O43739 400 aa13.24□□□□□ -0.29
SDC3-201ENST00000336798 SLC9A1P19634 815 aa13.24□□□□□ -0.29
SDC3-201ENST00000336798 RABGAP1LQ5R372 815 aa13.24□□□□□ -0.29
SDC3-201ENST00000336798 RERGLQ9H628 205 aa13.24□□□□□ -0.29
SDC3-201ENST00000336798 ZNF556Q9HAH1 456 aa13.24□□□□□ -0.29
SDC3-201ENST00000336798 EXOSC4Q9NPD3 245 aaKnown RBP13.24□□□□□ -0.29
SDC3-201ENST00000336798 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.24□□□□□ -0.299e-7■■■□□ 14.6
SDC3-201ENST00000336798 DAB1O75553 588 aa13.23□□□□□ -0.29
SDC3-201ENST00000336798 RPS6KA5O75582 802 aa13.23□□□□□ -0.29
SDC3-201ENST00000336798 PBLDP30039 288 aaPredicted RBP13.23□□□□□ -0.29
SDC3-201ENST00000336798 ALFQ53S48 1182 aa13.23□□□□□ -0.29
SDC3-201ENST00000336798 FBXW10Q5XX13 1052 aa13.23□□□□□ -0.29
SDC3-201ENST00000336798 JADE3Q92613 823 aa13.23□□□□□ -0.29
SDC3-201ENST00000336798 GTF2A1LQ9UNN4 478 aa13.23□□□□□ -0.29
SDC3-201ENST00000336798 SETD1BQ9UPS6 1966 aaKnown RBP13.23□□□□□ -0.29
SDC3-201ENST00000336798 NDUFB5O43674 189 aa13.23□□□□□ -0.29
SDC3-201ENST00000336798 MED21Q13503 144 aa13.23□□□□□ -0.29
SDC3-201ENST00000336798 SLC35G2Q8TBE7 412 aa13.23□□□□□ -0.29
SDC3-201ENST00000336798 PNKPQ96T60 521 aa13.23□□□□□ -0.29
SDC3-201ENST00000336798 SMARCAL1Q9NZC9 954 aa13.23□□□□□ -0.29
SDC3-201ENST00000336798 TARSL2A2RTX5 802 aaKnown RBP13.23□□□□□ -0.29
SDC3-201ENST00000336798 WEE2P0C1S8 567 aa13.23□□□□□ -0.29
SDC3-201ENST00000336798 CYP4A22Q5TCH4 519 aa13.23□□□□□ -0.29
SDC3-201ENST00000336798 CHMP2BQ9UQN3 213 aa13.23□□□□□ -0.29
SDC3-201ENST00000336798 ZFYVE16Q7Z3T8 1539 aa13.23□□□□□ -0.29
SDC3-201ENST00000336798 PVALEFA0A1B0GWK0 134 aa13.23□□□□□ -0.29
SDC3-201ENST00000336798 KRT8P05787 483 aa13.23□□□□□ -0.29
SDC3-201ENST00000336798 CHRM3P20309 590 aa13.23□□□□□ -0.29
SDC3-201ENST00000336798 ALDH6A1Q02252 535 aaKnown RBP13.23□□□□□ -0.29
SDC3-201ENST00000336798 FUT11Q495W5 492 aa13.23□□□□□ -0.29
SDC3-201ENST00000336798 CDR2LQ86X02 465 aaPredicted RBP13.23□□□□□ -0.29
SDC3-201ENST00000336798 GPR63Q9BZJ6 419 aa13.23□□□□□ -0.29
SDC3-201ENST00000336798 LCMT1Q9UIC8 334 aa13.23□□□□□ -0.29
SDC3-201ENST00000336798 PCDHB8Q9UN66 801 aa13.23□□□□□ -0.29
SDC3-201ENST00000336798 MORC2Q9Y6X9 1032 aaPredicted RBP13.23□□□□□ -0.29
SDC3-201ENST00000336798 RTN2O75298 545 aa13.23□□□□□ -0.29
SDC3-201ENST00000336798 NCALDP61601 193 aa13.23□□□□□ -0.29
SDC3-201ENST00000336798 MAPRE2Q15555 327 aa13.23□□□□□ -0.29
SDC3-201ENST00000336798 CNGA3Q16281 694 aa13.23□□□□□ -0.29
SDC3-201ENST00000336798 CCDC144BQ3MJ40 725 aa13.23□□□□□ -0.29
SDC3-201ENST00000336798 EPC2Q52LR7 807 aa13.23□□□□□ -0.29
SDC3-201ENST00000336798 DCAF6Q58WW2 860 aa13.23□□□□□ -0.29
SDC3-201ENST00000336798 HORMAD1Q86X24 394 aa13.23□□□□□ -0.29
SDC3-201ENST00000336798 PI4K2AQ9BTU6 479 aa13.23□□□□□ -0.29
SDC3-201ENST00000336798 TCOF1Q13428 1488 aaKnown RBP13.23□□□□□ -0.29
SDC3-201ENST00000336798 ENDOD1O94919 500 aa13.22□□□□□ -0.29
SDC3-201ENST00000336798 ITGA4P13612 1032 aa13.22□□□□□ -0.29
SDC3-201ENST00000336798 ORC1Q13415 861 aa13.22□□□□□ -0.29
SDC3-201ENST00000336798 INPP5AQ14642 412 aa13.22□□□□□ -0.29
SDC3-201ENST00000336798 SDE2Q6IQ49 451 aa13.22□□□□□ -0.29
SDC3-201ENST00000336798 HES6Q96HZ4 224 aa13.22□□□□□ -0.29
SDC3-201ENST00000336798 KLK14Q9P0G3 267 aa13.22□□□□□ -0.29
SDC3-201ENST00000336798 GRIN1Q05586 938 aa13.22□□□□□ -0.29
SDC3-201ENST00000336798 PAN2Q504Q3 1202 aaKnown RBP13.22□□□□□ -0.29
SDC3-201ENST00000336798 C10orf120Q5SQS8 335 aa13.22□□□□□ -0.29
SDC3-201ENST00000336798 LONP2Q86WA8 852 aa13.22□□□□□ -0.29
SDC3-201ENST00000336798 FAM136AQ96C01 138 aa13.22□□□□□ -0.29
SDC3-201ENST00000336798 EHD2Q9NZN4 543 aa13.22□□□□□ -0.29
SDC3-201ENST00000336798 ZC3H7BQ9UGR2 993 aaKnown RBP13.22□□□□□ -0.29
SDC3-201ENST00000336798 CNOT7Q9UIV1 285 aaKnown RBP13.22□□□□□ -0.29
SDC3-201ENST00000336798 PCDHB7Q9Y5E2 793 aa13.22□□□□□ -0.29
SDC3-201ENST00000336798 H0YC42 278 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms