RNA–Protein interactions for RNA: ENST00000328923.7

SHMT2-201, Transcript of serine hydroxymethyltransferase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT2, Length 2,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-201ENST00000328923 MCUR1Q96AQ8 359 aa12.53□□□□□ -0.4
SHMT2-201ENST00000328923 TTC1Q99614 292 aa12.53□□□□□ -0.4
SHMT2-201ENST00000328923 BTBD10Q9BSF8 475 aa12.53□□□□□ -0.4
SHMT2-201ENST00000328923 TRIM9Q9C026 710 aa12.53□□□□□ -0.4
SHMT2-201ENST00000328923 CLK4Q9HAZ1 481 aaKnown RBP12.53□□□□□ -0.4
SHMT2-201ENST00000328923 DNAJC17Q9NVM6 304 aaKnown RBP12.53□□□□□ -0.4
SHMT2-201ENST00000328923 ZFP69BQ9UJL9 534 aa12.53□□□□□ -0.4
SHMT2-201ENST00000328923 CASZ1Q86V15 1759 aa12.53□□□□□ -0.4
SHMT2-201ENST00000328923 CCDC188H7C350 402 aa12.53□□□□□ -0.4
SHMT2-201ENST00000328923 TEX28O15482 410 aa12.53□□□□□ -0.4
SHMT2-201ENST00000328923 ADCY6O43306 1168 aa12.53□□□□□ -0.4
SHMT2-201ENST00000328923 SERPING1P05155 500 aa12.53□□□□□ -0.4
SHMT2-201ENST00000328923 FGRP09769 529 aa12.53□□□□□ -0.4
SHMT2-201ENST00000328923 EEF2P13639 858 aaKnown RBP12.53□□□□□ -0.4
SHMT2-201ENST00000328923 MOGSQ13724 837 aa12.53□□□□□ -0.4
SHMT2-201ENST00000328923 BTNL9Q6UXG8 535 aa12.53□□□□□ -0.4
SHMT2-201ENST00000328923 RASSF3Q86WH2 238 aa12.53□□□□□ -0.4
SHMT2-201ENST00000328923 TTC39CQ8N584 583 aa12.53□□□□□ -0.4
SHMT2-201ENST00000328923 MORC4Q8TE76 937 aa12.53□□□□□ -0.4
SHMT2-201ENST00000328923 ITPKCQ96DU7 683 aa12.53□□□□□ -0.4
SHMT2-201ENST00000328923 KLHL4Q9C0H6 718 aa12.53□□□□□ -0.4
SHMT2-201ENST00000328923 ZBTB21Q9ULJ3 1066 aa12.53□□□□□ -0.4
SHMT2-201ENST00000328923 DMTF1Q9Y222 760 aa12.53□□□□□ -0.4
SHMT2-201ENST00000328923 hCG_1642624A0A1W2PR95 340 aa12.52□□□□□ -0.4
SHMT2-201ENST00000328923 PLSCR1O15162 318 aa12.52□□□□□ -0.4
SHMT2-201ENST00000328923 HAUS5O94927 633 aa12.52□□□□□ -0.4
SHMT2-201ENST00000328923 APOEP02649 317 aa12.52□□□□□ -0.4
SHMT2-201ENST00000328923 DLG1Q12959 904 aa12.52□□□□□ -0.4
SHMT2-201ENST00000328923 DNAJC3Q13217 504 aa12.52□□□□□ -0.4
SHMT2-201ENST00000328923 RASGRF1Q13972 1273 aa12.52□□□□□ -0.4
SHMT2-201ENST00000328923 HNRNPDQ14103 355 aaKnown RBP12.52□□□□□ -0.4
SHMT2-201ENST00000328923 NR1D2Q14995 579 aa12.52□□□□□ -0.4
SHMT2-201ENST00000328923 MFSD5Q6N075 450 aa12.52□□□□□ -0.4
SHMT2-201ENST00000328923 ZDHHC24Q6UX98 284 aa12.52□□□□□ -0.4
SHMT2-201ENST00000328923 SMIM5Q71RC9 77 aa12.52□□□□□ -0.4
SHMT2-201ENST00000328923 DDHD1Q8NEL9 900 aa12.52□□□□□ -0.4
SHMT2-201ENST00000328923 OR6Y1Q8NGX8 325 aa12.52□□□□□ -0.4
SHMT2-201ENST00000328923 ANKS1AQ92625 1134 aa12.52□□□□□ -0.4
SHMT2-201ENST00000328923 SKA1Q96BD8 255 aa12.52□□□□□ -0.4
SHMT2-201ENST00000328923 TMEM109Q9BVC6 243 aa12.52□□□□□ -0.4
SHMT2-201ENST00000328923 MMRN2Q9H8L6 949 aa12.52□□□□□ -0.4
SHMT2-201ENST00000328923 SLCO1B3Q9NPD5 702 aa12.52□□□□□ -0.4
SHMT2-201ENST00000328923 NDE1Q9NXR1 346 aa12.52□□□□□ -0.4
SHMT2-201ENST00000328923 CNOT7Q9UIV1 285 aaKnown RBP12.52□□□□□ -0.4
SHMT2-201ENST00000328923 SNX24Q9Y343 169 aa12.52□□□□□ -0.4
SHMT2-201ENST00000328923 NR2E1Q9Y466 385 aa12.52□□□□□ -0.4
SHMT2-201ENST00000328923 FLT1P17948 1338 aa12.52□□□□□ -0.4
SHMT2-201ENST00000328923 PITPNM2Q9BZ72 1349 aa12.52□□□□□ -0.4
SHMT2-201ENST00000328923 ATAD5Q96QE3 1844 aa12.52□□□□□ -0.41
SHMT2-201ENST00000328923 COL4A1P02462 1669 aa12.52□□□□□ -0.41
SHMT2-201ENST00000328923 ANKRD34BA5PLL1 514 aa12.52□□□□□ -0.41
SHMT2-201ENST00000328923 NOTOA8MTQ0 251 aa12.52□□□□□ -0.41
SHMT2-201ENST00000328923 SNAP23O00161 211 aa12.52□□□□□ -0.41
SHMT2-201ENST00000328923 GYG2O15488 501 aa12.52□□□□□ -0.41
SHMT2-201ENST00000328923 CCDC22O60826 627 aa12.52□□□□□ -0.41
SHMT2-201ENST00000328923 CLPTM1O96005 669 aa12.52□□□□□ -0.41
SHMT2-201ENST00000328923 UBL4AP11441 157 aa12.52□□□□□ -0.41
SHMT2-201ENST00000328923 SLC5A1P13866 664 aa12.52□□□□□ -0.41
SHMT2-201ENST00000328923 TCEA1P23193 301 aaKnown RBP12.52□□□□□ -0.41
SHMT2-201ENST00000328923 COPB2P35606 906 aa12.52□□□□□ -0.41
SHMT2-201ENST00000328923 CHN2P52757 468 aa12.52□□□□□ -0.41
SHMT2-201ENST00000328923 AMPD3Q01432 767 aa12.52□□□□□ -0.41
SHMT2-201ENST00000328923 POU5F1Q01860 360 aaKnown RBP12.52□□□□□ -0.41
SHMT2-201ENST00000328923 STK4Q13043 487 aa12.52□□□□□ -0.41
SHMT2-201ENST00000328923 PDK3Q15120 406 aa12.52□□□□□ -0.41
SHMT2-201ENST00000328923 ERFEQ4G0M1 354 aa12.52□□□□□ -0.41
SHMT2-201ENST00000328923 SFT2D3Q587I9 215 aa12.52□□□□□ -0.41
SHMT2-201ENST00000328923 BLIDQ8IZY5 108 aa12.52□□□□□ -0.41
SHMT2-201ENST00000328923 USP6NLQ92738 828 aa12.52□□□□□ -0.41
SHMT2-201ENST00000328923 ANKRD36BP1Q96IX9 119 aa12.52□□□□□ -0.41
SHMT2-201ENST00000328923 PLGRKTQ9HBL7 147 aa12.52□□□□□ -0.41
SHMT2-201ENST00000328923 USP40Q9NVE5 1235 aa12.52□□□□□ -0.41
SHMT2-201ENST00000328923 ZNHIT2Q9UHR6 403 aa12.52□□□□□ -0.41
SHMT2-201ENST00000328923 PHTF1Q9UMS5 762 aa12.52□□□□□ -0.41
SHMT2-201ENST00000328923 TLL2Q9Y6L7 1015 aa12.52□□□□□ -0.41
SHMT2-201ENST00000328923 ATP8B3O60423 1300 aa12.52□□□□□ -0.41
SHMT2-201ENST00000328923 TESPA1A2RU30 521 aaPredicted RBP12.51□□□□□ -0.41
SHMT2-201ENST00000328923 NDC80O14777 642 aa12.51□□□□□ -0.41
SHMT2-201ENST00000328923 RIPK2O43353 540 aa12.51□□□□□ -0.41
SHMT2-201ENST00000328923 OCM2P0CE71 109 aa12.51□□□□□ -0.41
SHMT2-201ENST00000328923 OCMP0CE72 109 aaPredicted RBP12.51□□□□□ -0.41
SHMT2-201ENST00000328923 PABPC1P11940 636 aaKnown RBP12.51□□□□□ -0.41
SHMT2-201ENST00000328923 BRAFP15056 766 aa12.51□□□□□ -0.41
SHMT2-201ENST00000328923 NOP14P78316 857 aaKnown RBP12.51□□□□□ -0.41
SHMT2-201ENST00000328923 LRRC63Q05C16 580 aa12.51□□□□□ -0.41
SHMT2-201ENST00000328923 DUPD1Q68J44 220 aa12.51□□□□□ -0.41
SHMT2-201ENST00000328923 ELMSAN1Q6PJG2 1045 aa12.51□□□□□ -0.41
SHMT2-201ENST00000328923 FASTKD5Q7L8L6 764 aaKnown RBP12.51□□□□□ -0.41
SHMT2-201ENST00000328923 MTDHQ86UE4 582 aaKnown RBP12.51□□□□□ -0.41
SHMT2-201ENST00000328923 PDSS2Q86YH6 399 aa12.51□□□□□ -0.41
SHMT2-201ENST00000328923 VPS52Q8N1B4 723 aa12.51□□□□□ -0.41
SHMT2-201ENST00000328923 SRBD1Q8N5C6 995 aaKnown RBP12.51□□□□□ -0.41
SHMT2-201ENST00000328923 RNF169Q8NCN4 708 aa12.51□□□□□ -0.41
SHMT2-201ENST00000328923 PYROXD1Q8WU10 500 aa12.51□□□□□ -0.41
SHMT2-201ENST00000328923 CRNKL1Q9BZJ0 848 aaKnown RBP12.51□□□□□ -0.41
SHMT2-201ENST00000328923 LRRC27Q9C0I9 530 aa12.51□□□□□ -0.41
SHMT2-201ENST00000328923 SENP6Q9GZR1 1112 aaPredicted RBP12.51□□□□□ -0.41
SHMT2-201ENST00000328923 LIN28AQ9H9Z2 209 aaKnown RBP12.51□□□□□ -0.41
SHMT2-201ENST00000328923 VTA1Q9NP79 307 aa12.51□□□□□ -0.41
SHMT2-201ENST00000328923 MTUS1Q9ULD2 1270 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms