RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 TEX33O43247 280 aa19.59■□□□□ 0.73
HMGA1-201ENST00000311487 B3GAT3O94766 335 aa19.59■□□□□ 0.73
HMGA1-201ENST00000311487 KLK7P49862 253 aa19.59■□□□□ 0.73
HMGA1-201ENST00000311487 MXI1P50539 228 aa19.59■□□□□ 0.73
HMGA1-201ENST00000311487 FANCCQ00597 558 aa19.59■□□□□ 0.73
HMGA1-201ENST00000311487 DSC1Q08554 894 aa19.59■□□□□ 0.73
HMGA1-201ENST00000311487 MAN2A1Q16706 1144 aa19.59■□□□□ 0.73
HMGA1-201ENST00000311487 UPP1Q16831 310 aa19.59■□□□□ 0.73
HMGA1-201ENST00000311487 CXorf38Q8TB03 319 aa19.59■□□□□ 0.73
HMGA1-201ENST00000311487 BCL7CQ8WUZ0 217 aaPredicted RBP19.59■□□□□ 0.73
HMGA1-201ENST00000311487 C17orf80Q9BSJ5 609 aa19.59■□□□□ 0.73
HMGA1-201ENST00000311487 SLC38A7Q9NVC3 462 aa19.59■□□□□ 0.73
HMGA1-201ENST00000311487 LIMA1Q9UHB6 759 aaKnown RBP19.59■□□□□ 0.73
HMGA1-201ENST00000311487 HSFX4A0A1B0GTS1 333 aaPredicted RBP19.59■□□□□ 0.73
HMGA1-201ENST00000311487 HSFX3A0A1B0GWH4 333 aaPredicted RBP19.59■□□□□ 0.73
HMGA1-201ENST00000311487 INPPL1O15357 1258 aa19.59■□□□□ 0.73
HMGA1-201ENST00000311487 KIF4AO95239 1232 aa19.59■□□□□ 0.73
HMGA1-201ENST00000311487 MSNP26038 577 aaKnown RBP19.59■□□□□ 0.73
HMGA1-201ENST00000311487 PIK3CAP42336 1068 aa19.59■□□□□ 0.73
HMGA1-201ENST00000311487 CDR1P51861 262 aa19.59■□□□□ 0.73
HMGA1-201ENST00000311487 MYL7Q01449 175 aa19.59■□□□□ 0.73
HMGA1-201ENST00000311487 USP37Q86T82 979 aa19.59■□□□□ 0.73
HMGA1-201ENST00000311487 CMTR2Q8IYT2 770 aaKnown RBP19.59■□□□□ 0.73
HMGA1-201ENST00000311487 B3GALT6Q96L58 329 aa19.59■□□□□ 0.73
HMGA1-201ENST00000311487 MRPL9Q9BYD2 267 aaKnown RBP19.59■□□□□ 0.73
HMGA1-201ENST00000311487 NKX2-4Q9H2Z4 354 aa19.59■□□□□ 0.73
HMGA1-201ENST00000311487 TMEM8AQ9HCN3 771 aa19.59■□□□□ 0.73
HMGA1-201ENST00000311487 IFNKQ9P0W0 207 aa19.59■□□□□ 0.73
HMGA1-201ENST00000311487 PDCD11Q14690 1871 aaKnown RBP19.58■□□□□ 0.73
HMGA1-201ENST00000311487 RALGAPA2Q2PPJ7 1873 aa19.58■□□□□ 0.73
HMGA1-201ENST00000311487 SCN1AP35498 2009 aa19.58■□□□□ 0.72
HMGA1-201ENST00000311487 LINC01553A4QN01 128 aa19.58■□□□□ 0.72
HMGA1-201ENST00000311487 SPTLC1O15269 473 aa19.58■□□□□ 0.72
HMGA1-201ENST00000311487 HLA-DRAP01903 254 aa19.58■□□□□ 0.72
HMGA1-201ENST00000311487 ALDH2P05091 517 aa19.58■□□□□ 0.72
HMGA1-201ENST00000311487 GALTP07902 379 aa19.58■□□□□ 0.72
HMGA1-201ENST00000311487 ALDH7A1P49419 539 aaKnown RBP19.58■□□□□ 0.72
HMGA1-201ENST00000311487 POU5F1Q01860 360 aaKnown RBP19.58■□□□□ 0.72
HMGA1-201ENST00000311487 TRPC3Q13507 836 aa19.58■□□□□ 0.72
HMGA1-201ENST00000311487 NCOA4Q13772 614 aa19.58■□□□□ 0.72
HMGA1-201ENST00000311487 ZACNQ401N2 412 aa19.58■□□□□ 0.72
HMGA1-201ENST00000311487 KRT39Q6A163 491 aa19.58■□□□□ 0.72
HMGA1-201ENST00000311487 DERAQ9Y315 318 aa19.58■□□□□ 0.72
HMGA1-201ENST00000311487 BRCC3P46736 316 aa19.57■□□□□ 0.72
HMGA1-201ENST00000311487 UBXN1Q04323 297 aa19.57■□□□□ 0.72
HMGA1-201ENST00000311487 HSP90AA2PQ14568 343 aaPredicted RBP19.57■□□□□ 0.72
HMGA1-201ENST00000311487 C15orf39Q6ZRI6 1047 aa19.57■□□□□ 0.72
HMGA1-201ENST00000311487 ANKRD20A12PQ8NF67 263 aa19.57■□□□□ 0.72
HMGA1-201ENST00000311487 FAN1Q9Y2M0 1017 aa19.57■□□□□ 0.72
HMGA1-201ENST00000311487 LINC00271P0C7V0 271 aa19.57■□□□□ 0.72
HMGA1-201ENST00000311487 SLC9A1P19634 815 aa19.57■□□□□ 0.72
HMGA1-201ENST00000311487 KCNT2Q6UVM3 1135 aa19.57■□□□□ 0.72
HMGA1-201ENST00000311487 FAM43BQ6ZT52 329 aaPredicted RBP19.57■□□□□ 0.72
HMGA1-201ENST00000311487 NXF1Q9UBU9 619 aaKnown RBP19.57■□□□□ 0.72
HMGA1-201ENST00000311487 TIMM13Q9Y5L4 95 aaPredicted RBP19.57■□□□□ 0.72
HMGA1-201ENST00000311487 ZNF75DP51815 510 aa19.56■□□□□ 0.72
HMGA1-201ENST00000311487 UBASH3AP57075 661 aa19.56■□□□□ 0.72
HMGA1-201ENST00000311487 CD300LGQ6UXG3 332 aa19.56■□□□□ 0.72
HMGA1-201ENST00000311487 COLGALT1Q8NBJ5 622 aa19.56■□□□□ 0.72
HMGA1-201ENST00000311487 HPDLQ96IR7 371 aa19.56■□□□□ 0.72
HMGA1-201ENST00000311487 GCNT4Q9P109 453 aa19.56■□□□□ 0.72
HMGA1-201ENST00000311487 ITGA11Q9UKX5 1188 aa19.56■□□□□ 0.72
HMGA1-201ENST00000311487 POLIQ9UNA4 740 aa19.56■□□□□ 0.72
HMGA1-201ENST00000311487 R3HCC1Q9Y3T6 440 aaKnown RBP19.56■□□□□ 0.72
HMGA1-201ENST00000311487 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP19.56■□□□□ 0.722e-259■■■■■ 48.7
HMGA1-201ENST00000311487 EYSQ5T1H1 3165 aa19.56■□□□□ 0.72
HMGA1-201ENST00000311487 ANO9A1A5B4 782 aa19.55■□□□□ 0.72
HMGA1-201ENST00000311487 PIRO00625 290 aa19.55■□□□□ 0.72
HMGA1-201ENST00000311487 XPOTO43592 962 aaKnown RBP19.55■□□□□ 0.72
HMGA1-201ENST00000311487 RBP5P82980 135 aa19.55■□□□□ 0.72
HMGA1-201ENST00000311487 GJB7Q6PEY0 223 aa19.55■□□□□ 0.72
HMGA1-201ENST00000311487 SCARA5Q6ZMJ2 495 aa19.55■□□□□ 0.72
HMGA1-201ENST00000311487 TAS1R1Q7RTX1 841 aa19.55■□□□□ 0.72
HMGA1-201ENST00000311487 NT5DC4Q86YG4 428 aa19.55■□□□□ 0.72
HMGA1-201ENST00000311487 FBXL13Q8NEE6 735 aa19.55■□□□□ 0.72
HMGA1-201ENST00000311487 TATDN2Q93075 761 aa19.55■□□□□ 0.72
HMGA1-201ENST00000311487 XPO4Q9C0E2 1151 aaKnown RBP19.55■□□□□ 0.72
HMGA1-201ENST00000311487 ALG13Q9NP73 1137 aaKnown RBP19.55■□□□□ 0.72
HMGA1-201ENST00000311487 MARCH5Q9NX47 278 aa19.55■□□□□ 0.72
HMGA1-201ENST00000311487 RAB20Q9NX57 234 aa19.55■□□□□ 0.72
HMGA1-201ENST00000311487 NUB1Q9Y5A7 615 aa19.55■□□□□ 0.72
HMGA1-201ENST00000311487 LRRC10BA6NIK2 292 aa19.55■□□□□ 0.72
HMGA1-201ENST00000311487 STX10O60499 249 aa19.55■□□□□ 0.72
HMGA1-201ENST00000311487 TADA2AO75478 443 aa19.55■□□□□ 0.72
HMGA1-201ENST00000311487 TPM2P07951 284 aa19.55■□□□□ 0.72
HMGA1-201ENST00000311487 CYP3A5P20815 502 aa19.55■□□□□ 0.72
HMGA1-201ENST00000311487 CTNNB1P35222 781 aa19.55■□□□□ 0.72
HMGA1-201ENST00000311487 LILRA4P59901 499 aa19.55■□□□□ 0.72
HMGA1-201ENST00000311487 WDR72Q3MJ13 1102 aa19.55■□□□□ 0.72
HMGA1-201ENST00000311487 SARM1Q6SZW1 724 aa19.55■□□□□ 0.72
HMGA1-201ENST00000311487 GPIHBP1Q8IV16 184 aa19.55■□□□□ 0.72
HMGA1-201ENST00000311487 SP7Q8TDD2 431 aaPredicted RBP19.55■□□□□ 0.72
HMGA1-201ENST00000311487 APOBEC3GQ9HC16 384 aaKnown RBP19.55■□□□□ 0.72
HMGA1-201ENST00000311487 PCDHA11Q9Y5I1 949 aa19.55■□□□□ 0.72
HMGA1-201ENST00000311487 DNAJB2P25686 324 aa19.54■□□□□ 0.72
HMGA1-201ENST00000311487 LRPAP1P30533 357 aa19.54■□□□□ 0.72
HMGA1-201ENST00000311487 GTF2H1P32780 548 aa19.54■□□□□ 0.72
HMGA1-201ENST00000311487 TAP1Q03518 808 aa19.54■□□□□ 0.72
HMGA1-201ENST00000311487 KCNMA1Q12791 1236 aa19.54■□□□□ 0.72
HMGA1-201ENST00000311487 TIGD5Q53EQ6 642 aa19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms