RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 ARPP19P56211 112 aa16.17■□□□□ 0.18
CCDC88B-201ENST00000301897 SOX4Q06945 474 aaPredicted RBP16.17■□□□□ 0.18
CCDC88B-201ENST00000301897 FZD5Q13467 585 aa16.17■□□□□ 0.18
CCDC88B-201ENST00000301897 GNL2Q13823 731 aaKnown RBP16.17■□□□□ 0.18
CCDC88B-201ENST00000301897 CTXN3Q4LDR2 81 aa16.17■□□□□ 0.18
CCDC88B-201ENST00000301897 FAM78AQ5JUQ0 283 aa16.17■□□□□ 0.18
CCDC88B-201ENST00000301897 TTC38Q5R3I4 469 aa16.17■□□□□ 0.18
CCDC88B-201ENST00000301897 CELF5Q8N6W0 485 aaKnown RBP16.17■□□□□ 0.18
CCDC88B-201ENST00000301897 MSANTD3Q96H12 275 aa16.17■□□□□ 0.18
CCDC88B-201ENST00000301897 SUSD3Q96L08 255 aa16.17■□□□□ 0.18
CCDC88B-201ENST00000301897 RTKNQ9BST9 563 aa16.17■□□□□ 0.18
CCDC88B-201ENST00000301897 TCHPQ9BT92 498 aa16.17■□□□□ 0.18
CCDC88B-201ENST00000301897 OXCT2Q9BYC2 517 aaPredicted RBP16.17■□□□□ 0.18
CCDC88B-201ENST00000301897 TRPV4Q9HBA0 871 aa16.17■□□□□ 0.18
CCDC88B-201ENST00000301897 PTPRHQ9HD43 1115 aa16.17■□□□□ 0.18
CCDC88B-201ENST00000301897 ARHGAP28Q9P2N2 729 aa16.17■□□□□ 0.18
CCDC88B-201ENST00000301897 FBXL5Q9UKA1 691 aa16.17■□□□□ 0.18
CCDC88B-201ENST00000301897 USP18Q9UMW8 372 aa16.17■□□□□ 0.18
CCDC88B-201ENST00000301897 NOL7Q9UMY1 257 aaKnown RBP16.17■□□□□ 0.18
CCDC88B-201ENST00000301897 NDRG2Q9UN36 371 aaKnown RBP16.17■□□□□ 0.18
CCDC88B-201ENST00000301897 KIAA1024Q9UPX6 916 aa16.17■□□□□ 0.18
CCDC88B-201ENST00000301897 DNM3Q9UQ16 869 aa16.17■□□□□ 0.18
CCDC88B-201ENST00000301897 CHD8Q9HCK8 2581 aa16.17■□□□□ 0.18
CCDC88B-201ENST00000301897 LRP3O75074 770 aa16.16■□□□□ 0.18
CCDC88B-201ENST00000301897 NEK4P51957 841 aa16.16■□□□□ 0.18
CCDC88B-201ENST00000301897 PEX3P56589 373 aa16.16■□□□□ 0.18
CCDC88B-201ENST00000301897 OSTNP61366 133 aa16.16■□□□□ 0.18
CCDC88B-201ENST00000301897 GRM2Q14416 872 aa16.16■□□□□ 0.18
CCDC88B-201ENST00000301897 LAIR1Q6GTX8 287 aa16.16■□□□□ 0.18
CCDC88B-201ENST00000301897 MPZL3Q6UWV2 235 aa16.16■□□□□ 0.18
CCDC88B-201ENST00000301897 MAP4K3Q8IVH8 894 aa16.16■□□□□ 0.18
CCDC88B-201ENST00000301897 ZNF687Q8N1G0 1237 aa16.16■□□□□ 0.18
CCDC88B-201ENST00000301897 TCEAL4Q96EI5 215 aa16.16■□□□□ 0.18
CCDC88B-201ENST00000301897 TIPINQ9BVW5 301 aa16.16■□□□□ 0.18
CCDC88B-201ENST00000301897 ZNF334Q9HCZ1 680 aaPredicted RBP16.16■□□□□ 0.18
CCDC88B-201ENST00000301897 KMT5AQ9NQR1 393 aa16.16■□□□□ 0.18
CCDC88B-201ENST00000301897 ASAH2Q9NR71 780 aa16.16■□□□□ 0.18
CCDC88B-201ENST00000301897 DDX19AQ9NUU7 478 aaKnown RBP16.16■□□□□ 0.18
CCDC88B-201ENST00000301897 SHISA7A6NL88 538 aa16.15■□□□□ 0.18
CCDC88B-201ENST00000301897 SEC24AO95486 1093 aa16.15■□□□□ 0.18
CCDC88B-201ENST00000301897 PROZP22891 400 aa16.15■□□□□ 0.18
CCDC88B-201ENST00000301897 MARCKSP29966 332 aaPredicted RBP16.15■□□□□ 0.18
CCDC88B-201ENST00000301897 GDI1P31150 447 aa16.15■□□□□ 0.18
CCDC88B-201ENST00000301897 ATXN1P54253 815 aaKnown RBP16.15■□□□□ 0.18
CCDC88B-201ENST00000301897 EPHA5P54756 1037 aa16.15■□□□□ 0.18
CCDC88B-201ENST00000301897 PLD1Q13393 1074 aa16.15■□□□□ 0.18
CCDC88B-201ENST00000301897 TSSK4Q6SA08 328 aa16.15■□□□□ 0.18
CCDC88B-201ENST00000301897 MFSD6LQ8IWD5 586 aa16.15■□□□□ 0.18
CCDC88B-201ENST00000301897 CEP120Q8N960 986 aa16.15■□□□□ 0.18
CCDC88B-201ENST00000301897 SNX29Q8TEQ0 813 aa16.15■□□□□ 0.18
CCDC88B-201ENST00000301897 FAM3CQ92520 227 aa16.15■□□□□ 0.18
CCDC88B-201ENST00000301897 ZMAT2Q96NC0 199 aaKnown RBP16.15■□□□□ 0.18
CCDC88B-201ENST00000301897 LLPHQ9BRT6 129 aaKnown RBP16.15■□□□□ 0.18
CCDC88B-201ENST00000301897 PIAS3Q9Y6X2 628 aa16.15■□□□□ 0.18
CCDC88B-201ENST00000301897 KMT2BQ9UMN6 2715 aaPredicted RBP16.15■□□□□ 0.18
CCDC88B-201ENST00000301897 TICRRQ7Z2Z1 1910 aa16.14■□□□□ 0.17
CCDC88B-201ENST00000301897 ZNF263O14978 683 aa16.14■□□□□ 0.17
CCDC88B-201ENST00000301897 HIP1RO75146 1068 aa16.14■□□□□ 0.17
CCDC88B-201ENST00000301897 TDGF1P13385 188 aa16.14■□□□□ 0.17
CCDC88B-201ENST00000301897 CPB1P15086 417 aa16.14■□□□□ 0.17
CCDC88B-201ENST00000301897 MCM4P33991 863 aa16.14■□□□□ 0.17
CCDC88B-201ENST00000301897 CCR2P41597 374 aa16.14■□□□□ 0.17
CCDC88B-201ENST00000301897 GUCY1B3Q02153 619 aa16.14■□□□□ 0.17
CCDC88B-201ENST00000301897 STRN3Q13033 797 aa16.14■□□□□ 0.17
CCDC88B-201ENST00000301897 ECM1Q16610 540 aa16.14■□□□□ 0.17
CCDC88B-201ENST00000301897 VITQ6UXI7 678 aa16.14■□□□□ 0.17
CCDC88B-201ENST00000301897 IGSF22Q8N9C0 903 aa16.14■□□□□ 0.17
CCDC88B-201ENST00000301897 TBC1D32Q96NH3 1257 aa16.14■□□□□ 0.17
CCDC88B-201ENST00000301897 TARS2Q9BW92 718 aaKnown RBP16.14■□□□□ 0.17
CCDC88B-201ENST00000301897 LMAN1LQ9HAT1 526 aa16.14■□□□□ 0.17
CCDC88B-201ENST00000301897 POLD4Q9HCU8 107 aa16.14■□□□□ 0.17
CCDC88B-201ENST00000301897 PCDHB8Q9UN66 801 aa16.14■□□□□ 0.17
CCDC88B-201ENST00000301897 CNOT1A5YKK6 2376 aaKnown RBP16.14■□□□□ 0.17
CCDC88B-201ENST00000301897 PDCD11Q14690 1871 aaKnown RBP16.14■□□□□ 0.17
CCDC88B-201ENST00000301897 LAD1O00515 517 aa16.13■□□□□ 0.17
CCDC88B-201ENST00000301897 FOXD2O60548 495 aaPredicted RBP16.13■□□□□ 0.17
CCDC88B-201ENST00000301897 TOM1L1O75674 476 aa16.13■□□□□ 0.17
CCDC88B-201ENST00000301897 RETP07949 1114 aa16.13■□□□□ 0.17
CCDC88B-201ENST00000301897 CXCL12P48061 93 aa16.13■□□□□ 0.17
CCDC88B-201ENST00000301897 HMGN5P82970 282 aaKnown RBP16.13■□□□□ 0.17
CCDC88B-201ENST00000301897 TWF1Q12792 350 aa16.13■□□□□ 0.17
CCDC88B-201ENST00000301897 LRRC32Q14392 662 aa16.13■□□□□ 0.17
CCDC88B-201ENST00000301897 NOLC1Q14978 699 aaKnown RBP eCLIP16.13■□□□□ 0.17
CCDC88B-201ENST00000301897 KRT79Q5XKE5 535 aa16.13■□□□□ 0.17
CCDC88B-201ENST00000301897 POTEHQ6S545 545 aa16.13■□□□□ 0.17
CCDC88B-201ENST00000301897 YAF2Q8IY57 180 aa16.13■□□□□ 0.17
CCDC88B-201ENST00000301897 FBXO18Q8NFZ0 1043 aa16.13■□□□□ 0.17
CCDC88B-201ENST00000301897 ZSCAN18Q8TBC5 510 aaPredicted RBP16.13■□□□□ 0.17
CCDC88B-201ENST00000301897 CSGALNACT1Q8TDX6 532 aa16.13■□□□□ 0.17
CCDC88B-201ENST00000301897 DDX12PQ92771 950 aa16.13■□□□□ 0.17
CCDC88B-201ENST00000301897 C18orf25Q96B23 403 aaPredicted RBP16.13■□□□□ 0.17
CCDC88B-201ENST00000301897 NTPCRQ9BSD7 190 aaKnown RBP16.13■□□□□ 0.17
CCDC88B-201ENST00000301897 SLITRK6Q9H5Y7 841 aa16.13■□□□□ 0.17
CCDC88B-201ENST00000301897 C8orf33Q9H7E9 229 aaPredicted RBP16.13■□□□□ 0.17
CCDC88B-201ENST00000301897 PLEKHA5Q9HAU0 1116 aa16.13■□□□□ 0.17
CCDC88B-201ENST00000301897 LIMCH1Q9UPQ0 1083 aa16.13■□□□□ 0.17
CCDC88B-201ENST00000301897 COL4A2P08572 1712 aa16.13■□□□□ 0.17
CCDC88B-201ENST00000301897 ABLIM1O14639 778 aa16.12■□□□□ 0.17
CCDC88B-201ENST00000301897 MYL4P12829 197 aa16.12■□□□□ 0.17
CCDC88B-201ENST00000301897 TGM1P22735 817 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms