RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 MCEEQ96PE7 176 aa17.7■□□□□ 0.42
VPS54-201ENST00000272322 RPS6KC1Q96S38 1066 aa17.7■□□□□ 0.42
VPS54-201ENST00000272322 INO80BQ9C086 356 aaPredicted RBP17.7■□□□□ 0.42
VPS54-201ENST00000272322 POC1B-GALNT4F8VUJ3 575 aa17.7■□□□□ 0.42
VPS54-201ENST00000272322 SIX1Q15475 284 aaPredicted RBP17.7■□□□□ 0.42
VPS54-201ENST00000272322 XKR3Q5GH77 459 aa17.7■□□□□ 0.42
VPS54-201ENST00000272322 RHPN2Q8IUC4 686 aa17.7■□□□□ 0.42
VPS54-201ENST00000272322 SRRM1Q8IYB3 904 aaKnown RBP17.7■□□□□ 0.42
VPS54-201ENST00000272322 ZWILCHQ9H900 591 aa17.7■□□□□ 0.42
VPS54-201ENST00000272322 ANAPC5Q9UJX4 755 aa17.7■□□□□ 0.42
VPS54-201ENST00000272322 PCDHB2Q9Y5E7 798 aa17.7■□□□□ 0.42
VPS54-201ENST00000272322 SPDYE16A6NNV3 312 aaPredicted RBP17.69■□□□□ 0.42
VPS54-201ENST00000272322 MAP3K6O95382 1288 aa17.69■□□□□ 0.42
VPS54-201ENST00000272322 GGPS1O95749 300 aa17.69■□□□□ 0.42
VPS54-201ENST00000272322 CTNNA2P26232 953 aa17.69■□□□□ 0.42
VPS54-201ENST00000272322 CRELD2Q6UXH1 353 aaPredicted RBP17.69■□□□□ 0.42
VPS54-201ENST00000272322 FMNL3Q8IVF7 1028 aa17.69■□□□□ 0.42
VPS54-201ENST00000272322 C12orf56Q8IXR9 622 aa17.69■□□□□ 0.42
VPS54-201ENST00000272322 ARHGEF2Q92974 986 aaKnown RBP17.69■□□□□ 0.42
VPS54-201ENST00000272322 FHDC1Q9C0D6 1143 aaPredicted RBP17.69■□□□□ 0.42
VPS54-201ENST00000272322 MYPNQ86TC9 1320 aa17.69■□□□□ 0.42
VPS54-201ENST00000272322 PODXLO00592 558 aa17.69■□□□□ 0.42
VPS54-201ENST00000272322 SUPT20HL2P0C7V6 817 aa17.69■□□□□ 0.42
VPS54-201ENST00000272322 CUL2Q13617 745 aa17.69■□□□□ 0.42
VPS54-201ENST00000272322 SUPT20HL1Q3ZLR7 823 aa17.69■□□□□ 0.42
VPS54-201ENST00000272322 DCAF15Q66K64 600 aa17.69■□□□□ 0.42
VPS54-201ENST00000272322 GPRASP2Q96D09 838 aa17.69■□□□□ 0.42
VPS54-201ENST00000272322 OTUD5Q96G74 571 aa17.69■□□□□ 0.42
VPS54-201ENST00000272322 OSBPL7Q9BZF2 842 aa17.69■□□□□ 0.42
VPS54-201ENST00000272322 PCSK1NQ9UHG2 260 aa17.69■□□□□ 0.42
VPS54-201ENST00000272322 EXTL3O43909 919 aa17.68■□□□□ 0.42
VPS54-201ENST00000272322 ATF2P15336 505 aa17.68■□□□□ 0.42
VPS54-201ENST00000272322 ACTN3Q08043 901 aaPredicted RBP17.68■□□□□ 0.42
VPS54-201ENST00000272322 GKAP1Q5VSY0 366 aaPredicted RBP17.68■□□□□ 0.42
VPS54-201ENST00000272322 EMC1Q8N766 993 aa17.68■□□□□ 0.42
VPS54-201ENST00000272322 PSPC1Q8WXF1 523 aaKnown RBP17.68■□□□□ 0.42
VPS54-201ENST00000272322 RGS17Q9UGC6 210 aaPredicted RBP17.68■□□□□ 0.42
VPS54-201ENST00000272322 DOCK5Q9H7D0 1870 aa17.68■□□□□ 0.42
VPS54-201ENST00000272322 DNM1LO00429 736 aa17.68■□□□□ 0.42
VPS54-201ENST00000272322 SPAG7O75391 227 aa17.68■□□□□ 0.42
VPS54-201ENST00000272322 BAG6P46379 1132 aa17.68■□□□□ 0.42
VPS54-201ENST00000272322 ZACNQ401N2 412 aa17.68■□□□□ 0.42
VPS54-201ENST00000272322 JPH2Q9BR39 696 aaPredicted RBP17.68■□□□□ 0.42
VPS54-201ENST00000272322 UVRAGQ9P2Y5 699 aa17.68■□□□□ 0.42
VPS54-201ENST00000272322 DIS3Q9Y2L1 958 aaKnown RBP17.68■□□□□ 0.42
VPS54-201ENST00000272322 AFG3L2Q9Y4W6 797 aa17.68■□□□□ 0.42
VPS54-201ENST00000272322 LRRD1A4D1F6 860 aa17.68■□□□□ 0.42
VPS54-201ENST00000272322 B4GALT5O43286 388 aa17.68■□□□□ 0.42
VPS54-201ENST00000272322 UNGP13051 313 aaPredicted RBP17.68■□□□□ 0.42
VPS54-201ENST00000272322 HSDL1Q3SXM5 330 aa17.68■□□□□ 0.42
VPS54-201ENST00000272322 CYP4X1Q8N118 509 aa17.68■□□□□ 0.42
VPS54-201ENST00000272322 SEC14L1Q92503 715 aa17.68■□□□□ 0.42
VPS54-201ENST00000272322 AS3MTQ9HBK9 375 aa17.68■□□□□ 0.42
VPS54-201ENST00000272322 ARHGAP28Q9P2N2 729 aa17.68■□□□□ 0.42
VPS54-201ENST00000272322 OATP04181 439 aa17.67■□□□□ 0.42
VPS54-201ENST00000272322 TCF7P36402 384 aaPredicted RBP17.67■□□□□ 0.42
VPS54-201ENST00000272322 STAT5BP51692 787 aa17.67■□□□□ 0.42
VPS54-201ENST00000272322 MKRN3Q13064 507 aaKnown RBP17.67■□□□□ 0.42
VPS54-201ENST00000272322 AUHQ13825 339 aaKnown RBP17.67■□□□□ 0.42
VPS54-201ENST00000272322 FAM47EQ6ZV65 393 aa17.67■□□□□ 0.42
VPS54-201ENST00000272322 MTMR14Q8NCE2 650 aa17.67■□□□□ 0.42
VPS54-201ENST00000272322 OSBPL8Q9BZF1 889 aa17.67■□□□□ 0.42
VPS54-201ENST00000272322 IMPG2Q9BZV3 1241 aa17.67■□□□□ 0.42
VPS54-201ENST00000272322 HAUS2Q9NVX0 235 aa17.67■□□□□ 0.42
VPS54-201ENST00000272322 PCYOX1Q9UHG3 505 aa17.67■□□□□ 0.42
VPS54-201ENST00000272322 IVNS1ABPQ9Y6Y0 642 aa17.67■□□□□ 0.42
VPS54-201ENST00000272322 C4BPAP04003 597 aaKnown RBP17.67■□□□□ 0.42
VPS54-201ENST00000272322 UBA1P22314 1058 aaKnown RBP17.67■□□□□ 0.42
VPS54-201ENST00000272322 HNRNPH1P31943 449 aaKnown RBP17.67■□□□□ 0.42
VPS54-201ENST00000272322 MICALCLQ6ZW33 695 aa17.67■□□□□ 0.42
VPS54-201ENST00000272322 SAMD3Q8N6K7 520 aa17.67■□□□□ 0.42
VPS54-201ENST00000272322 ZNF606Q8WXB4 792 aa17.67■□□□□ 0.42
VPS54-201ENST00000272322 CHMP6Q96FZ7 201 aa17.67■□□□□ 0.42
VPS54-201ENST00000272322 AAASQ9NRG9 546 aa17.67■□□□□ 0.42
VPS54-201ENST00000272322 BTBD7Q9P203 1132 aa17.67■□□□□ 0.42
VPS54-201ENST00000272322 COQ4Q9Y3A0 265 aa17.67■□□□□ 0.42
VPS54-201ENST00000272322 SBDSQ9Y3A5 250 aaKnown RBP eCLIP17.67■□□□□ 0.42
VPS54-201ENST00000272322 MAMLD1Q13495 774 aa17.67■□□□□ 0.42
VPS54-201ENST00000272322 CAPSQ13938 189 aa17.67■□□□□ 0.42
VPS54-201ENST00000272322 P3H1Q32P28 736 aa17.67■□□□□ 0.42
VPS54-201ENST00000272322 TMEM192Q8IY95 271 aa17.67■□□□□ 0.42
VPS54-201ENST00000272322 CCDC13Q8IYE1 715 aa17.67■□□□□ 0.42
VPS54-201ENST00000272322 TMC2Q8TDI7 906 aa17.67■□□□□ 0.42
VPS54-201ENST00000272322 PLVAPQ9BX97 442 aa17.67■□□□□ 0.42
VPS54-201ENST00000272322 FGFR1OP2Q9NVK5 253 aa17.67■□□□□ 0.42
VPS54-201ENST00000272322 NOP56O00567 594 aaKnown RBP17.66■□□□□ 0.42
VPS54-201ENST00000272322 BYSLQ13895 437 aaKnown RBP17.66■□□□□ 0.42
VPS54-201ENST00000272322 R3HDM1Q15032 1099 aaKnown RBP17.66■□□□□ 0.42
VPS54-201ENST00000272322 EXOC3L1Q86VI1 746 aa17.66■□□□□ 0.42
VPS54-201ENST00000272322 NTPCRQ9BSD7 190 aaKnown RBP17.66■□□□□ 0.42
VPS54-201ENST00000272322 CD248Q9HCU0 757 aa17.66■□□□□ 0.42
VPS54-201ENST00000272322 DNPEPQ9ULA0 475 aa17.66■□□□□ 0.42
VPS54-201ENST00000272322 TMEM120BA0PK00 339 aa17.66■□□□□ 0.42
VPS54-201ENST00000272322 KRT1P04264 644 aa17.66■□□□□ 0.42
VPS54-201ENST00000272322 CLCN3P51790 818 aa17.66■□□□□ 0.42
VPS54-201ENST00000272322 MAP3K10Q02779 954 aa17.66■□□□□ 0.42
VPS54-201ENST00000272322 TRPC3Q13507 836 aa17.66■□□□□ 0.42
VPS54-201ENST00000272322 FASTKD3Q14CZ7 662 aaKnown RBP17.66■□□□□ 0.42
VPS54-201ENST00000272322 AGBL2Q5U5Z8 902 aa17.66■□□□□ 0.42
VPS54-201ENST00000272322 MFSD7Q6UXD7 560 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms