RNA–Protein interactions for RNA: ENST00000263856.8

CHMP3-201, Transcript of charged multivesicular body protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP3, Length 3,171 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-201ENST00000263856 ARSEP51690 589 aa13.15□□□□□ -0.3
CHMP3-201ENST00000263856 WDR4P57081 412 aaKnown RBP13.15□□□□□ -0.3
CHMP3-201ENST00000263856 WDR44Q5JSH3 913 aa13.15□□□□□ -0.3
CHMP3-201ENST00000263856 MIS18BP1Q6P0N0 1132 aa13.15□□□□□ -0.3
CHMP3-201ENST00000263856 BZW1Q7L1Q6 419 aaKnown RBP13.15□□□□□ -0.3
CHMP3-201ENST00000263856 CCDC89Q8N998 374 aa13.15□□□□□ -0.3
CHMP3-201ENST00000263856 MAGEC3Q8TD91 643 aa13.15□□□□□ -0.3
CHMP3-201ENST00000263856 LRRC37BQ96QE4 947 aa13.15□□□□□ -0.3
CHMP3-201ENST00000263856 SMC6Q96SB8 1091 aa13.15□□□□□ -0.3
CHMP3-201ENST00000263856 YIPF3Q9GZM5 350 aa13.15□□□□□ -0.3
CHMP3-201ENST00000263856 TMEM39BQ9GZU3 492 aa13.15□□□□□ -0.3
CHMP3-201ENST00000263856 TRABDQ9H4I3 376 aa13.15□□□□□ -0.3
CHMP3-201ENST00000263856 NPHS2Q9NP85 383 aa13.15□□□□□ -0.3
CHMP3-201ENST00000263856 ANKFY1Q9P2R3 1169 aa13.15□□□□□ -0.3
CHMP3-201ENST00000263856 EXOC7Q9UPT5 735 aa13.15□□□□□ -0.3
CHMP3-201ENST00000263856 ZBTB12Q9Y330 459 aaPredicted RBP13.15□□□□□ -0.3
CHMP3-201ENST00000263856 NEU2Q9Y3R4 380 aa13.15□□□□□ -0.3
CHMP3-201ENST00000263856 SGK1O00141 431 aa13.14□□□□□ -0.31
CHMP3-201ENST00000263856 P4HA2O15460 535 aa13.14□□□□□ -0.31
CHMP3-201ENST00000263856 OAS1P00973 400 aaKnown RBP13.14□□□□□ -0.31
CHMP3-201ENST00000263856 KRT1P04264 644 aa13.14□□□□□ -0.31
CHMP3-201ENST00000263856 IVDP26440 423 aa13.14□□□□□ -0.31
CHMP3-201ENST00000263856 RAD23BP54727 409 aa13.14□□□□□ -0.31
CHMP3-201ENST00000263856 CRYMQ14894 314 aa13.14□□□□□ -0.31
CHMP3-201ENST00000263856 TKFCQ3LXA3 575 aa13.14□□□□□ -0.31
CHMP3-201ENST00000263856 ANKRD20A2Q5SQ80 823 aa13.14□□□□□ -0.31
CHMP3-201ENST00000263856 ANKRD20A1Q5TYW2 823 aa13.14□□□□□ -0.31
CHMP3-201ENST00000263856 STRIP1Q5VSL9 837 aa13.14□□□□□ -0.31
CHMP3-201ENST00000263856 ANKRD20A3Q5VUR7 823 aa13.14□□□□□ -0.31
CHMP3-201ENST00000263856 ANKS1BQ7Z6G8 1248 aa13.14□□□□□ -0.31
CHMP3-201ENST00000263856 SEPT12Q8IYM1 358 aa13.14□□□□□ -0.31
CHMP3-201ENST00000263856 CCHCR1Q8TD31 782 aa13.14□□□□□ -0.31
CHMP3-201ENST00000263856 TAAR1Q96RJ0 339 aa13.14□□□□□ -0.31
CHMP3-201ENST00000263856 SAE1Q9UBE0 346 aaPredicted RBP13.14□□□□□ -0.31
CHMP3-201ENST00000263856 DNPEPQ9ULA0 475 aa13.14□□□□□ -0.31
CHMP3-201ENST00000263856 A0A1W2PPM1 405 aa13.14□□□□□ -0.31
CHMP3-201ENST00000263856 CCND1P24385 295 aa13.14□□□□□ -0.31
CHMP3-201ENST00000263856 EPHB2P29323 1055 aa13.14□□□□□ -0.31
CHMP3-201ENST00000263856 RPA3P35244 121 aaPredicted RBP13.14□□□□□ -0.31
CHMP3-201ENST00000263856 MTFR1Q15390 333 aa13.14□□□□□ -0.31
CHMP3-201ENST00000263856 NAIF1Q69YI7 327 aaPredicted RBP13.14□□□□□ -0.31
CHMP3-201ENST00000263856 PPP1R21Q6ZMI0 780 aa13.14□□□□□ -0.31
CHMP3-201ENST00000263856 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.14□□□□□ -0.31
CHMP3-201ENST00000263856 BSNDQ8WZ55 320 aa13.14□□□□□ -0.31
CHMP3-201ENST00000263856 L3MBTL3Q96JM7 780 aaPredicted RBP13.14□□□□□ -0.31
CHMP3-201ENST00000263856 NKX1-2Q9UD57 310 aaPredicted RBP13.14□□□□□ -0.31
CHMP3-201ENST00000263856 ENO4A6NNW6 628 aa13.14□□□□□ -0.31
CHMP3-201ENST00000263856 TRAF1Q13077 416 aa13.14□□□□□ -0.31
CHMP3-201ENST00000263856 LIN9Q5TKA1 542 aa13.14□□□□□ -0.31
CHMP3-201ENST00000263856 RHBDF2Q6PJF5 856 aa13.14□□□□□ -0.31
CHMP3-201ENST00000263856 RFX8Q6ZV50 586 aa13.14□□□□□ -0.31
CHMP3-201ENST00000263856 MAIP1Q8WWC4 291 aa13.14□□□□□ -0.31
CHMP3-201ENST00000263856 RIT2Q99578 217 aa13.14□□□□□ -0.31
CHMP3-201ENST00000263856 ZNF341Q9BYN7 854 aa13.14□□□□□ -0.31
CHMP3-201ENST00000263856 KIAA1683Q9H0B3 1180 aa13.14□□□□□ -0.31
CHMP3-201ENST00000263856 EBF2Q9HAK2 575 aa13.14□□□□□ -0.31
CHMP3-201ENST00000263856 TMX2Q9Y320 296 aa13.14□□□□□ -0.31
CHMP3-201ENST00000263856 KIF1CO43896 1103 aaKnown RBP13.13□□□□□ -0.31
CHMP3-201ENST00000263856 PDIA2Q13087 525 aaKnown RBP13.13□□□□□ -0.31
CHMP3-201ENST00000263856 EFTUD2Q15029 972 aaKnown RBP eCLIP13.13□□□□□ -0.31
CHMP3-201ENST00000263856 BRDTQ58F21 947 aaPredicted RBP13.13□□□□□ -0.31
CHMP3-201ENST00000263856 LONP2Q86WA8 852 aa13.13□□□□□ -0.31
CHMP3-201ENST00000263856 C12orf50Q8NA57 414 aaPredicted RBP13.13□□□□□ -0.31
CHMP3-201ENST00000263856 VTI1AQ96AJ9 217 aa13.13□□□□□ -0.31
CHMP3-201ENST00000263856 DDX27Q96GQ7 796 aaKnown RBP13.13□□□□□ -0.31
CHMP3-201ENST00000263856 STRA6Q9BX79 667 aa13.13□□□□□ -0.31
CHMP3-201ENST00000263856 UBN1Q9NPG3 1134 aa13.13□□□□□ -0.31
CHMP3-201ENST00000263856 SEPT9Q9UHD8 586 aaPredicted RBP13.13□□□□□ -0.31
CHMP3-201ENST00000263856 ZMYND8Q9ULU4 1186 aaPredicted RBP13.13□□□□□ -0.31
CHMP3-201ENST00000263856 ASTN2O75129 1339 aaPredicted RBP13.13□□□□□ -0.31
CHMP3-201ENST00000263856 A0A0G2JND7 137 aa13.13□□□□□ -0.31
CHMP3-201ENST00000263856 PECAM1P16284 738 aaPredicted RBP13.13□□□□□ -0.31
CHMP3-201ENST00000263856 GNA15P30679 374 aa13.13□□□□□ -0.31
CHMP3-201ENST00000263856 CETN2P41208 172 aa13.13□□□□□ -0.31
CHMP3-201ENST00000263856 GTF2BQ00403 316 aa13.13□□□□□ -0.31
CHMP3-201ENST00000263856 SPARCL1Q14515 664 aa13.13□□□□□ -0.31
CHMP3-201ENST00000263856 TNFAIP8L3Q5GJ75 292 aa13.13□□□□□ -0.31
CHMP3-201ENST00000263856 CRELD2Q6UXH1 353 aaPredicted RBP13.13□□□□□ -0.31
CHMP3-201ENST00000263856 RHOT1Q8IXI2 618 aa13.13□□□□□ -0.31
CHMP3-201ENST00000263856 DDX1Q92499 740 aaKnown RBP13.13□□□□□ -0.31
CHMP3-201ENST00000263856 RAB3IPQ96QF0 476 aaPredicted RBP13.13□□□□□ -0.31
CHMP3-201ENST00000263856 TMEM121Q9BTD3 319 aa13.13□□□□□ -0.31
CHMP3-201ENST00000263856 TXLNGQ9NUQ3 528 aa13.13□□□□□ -0.31
CHMP3-201ENST00000263856 GABBR1Q9UBS5 961 aa13.13□□□□□ -0.31
CHMP3-201ENST00000263856 LRRD1A4D1F6 860 aa13.12□□□□□ -0.31
CHMP3-201ENST00000263856 MTA2O94776 668 aa13.12□□□□□ -0.31
CHMP3-201ENST00000263856 UNC5CO95185 931 aa13.12□□□□□ -0.31
CHMP3-201ENST00000263856 DSG3P32926 999 aa13.12□□□□□ -0.31
CHMP3-201ENST00000263856 MAN1A1P33908 653 aa13.12□□□□□ -0.31
CHMP3-201ENST00000263856 LIG4P49917 911 aa13.12□□□□□ -0.31
CHMP3-201ENST00000263856 RPL7AP62424 266 aaKnown RBP13.12□□□□□ -0.31
CHMP3-201ENST00000263856 MRPS9P82933 396 aaKnown RBP13.12□□□□□ -0.31
CHMP3-201ENST00000263856 CYP24A1Q07973 514 aa13.12□□□□□ -0.31
CHMP3-201ENST00000263856 SMTNL2Q2TAL5 461 aa13.12□□□□□ -0.31
CHMP3-201ENST00000263856 GALNTL6Q49A17 601 aa13.12□□□□□ -0.31
CHMP3-201ENST00000263856 DCUN1D2Q6PH85 259 aa13.12□□□□□ -0.31
CHMP3-201ENST00000263856 MASTLQ96GX5 879 aa13.12□□□□□ -0.31
CHMP3-201ENST00000263856 RANBP17Q9H2T7 1088 aaKnown RBP13.12□□□□□ -0.31
CHMP3-201ENST00000263856 KIAA1586Q9HCI6 787 aa13.12□□□□□ -0.31
CHMP3-201ENST00000263856 AGO4Q9HCK5 861 aaKnown RBP13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms