RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 PALMO75781 387 aa14.45□□□□□ -0.1
LDLR-201ENST00000252444 FMR1Q06787 632 aaKnown RBP eCLIP14.45□□□□□ -0.16e-7■□□□□ 9.3
LDLR-201ENST00000252444 MAPK8IP2Q13387 824 aaPredicted RBP14.45□□□□□ -0.1
LDLR-201ENST00000252444 THOC5Q13769 683 aaKnown RBP14.45□□□□□ -0.1
LDLR-201ENST00000252444 P3H1Q32P28 736 aa14.45□□□□□ -0.1
LDLR-201ENST00000252444 SEPT10Q9P0V9 454 aa14.45□□□□□ -0.1
LDLR-201ENST00000252444 PYCARDQ9ULZ3 195 aa14.45□□□□□ -0.1
LDLR-201ENST00000252444 ZNF831Q5JPB2 1677 aa14.45□□□□□ -0.1
LDLR-201ENST00000252444 ETFBP38117 255 aa14.45□□□□□ -0.1
LDLR-201ENST00000252444 ALDH7A1P49419 539 aaKnown RBP14.45□□□□□ -0.1
LDLR-201ENST00000252444 COPS2P61201 443 aa14.45□□□□□ -0.1
LDLR-201ENST00000252444 ACAP1Q15027 740 aa14.45□□□□□ -0.1
LDLR-201ENST00000252444 UNC93AQ86WB7 457 aa14.45□□□□□ -0.1
LDLR-201ENST00000252444 TNFRSF25Q93038 417 aa14.45□□□□□ -0.1
LDLR-201ENST00000252444 SLITRK1Q96PX8 696 aa14.45□□□□□ -0.1
LDLR-201ENST00000252444 NGRNQ9NPE2 291 aaKnown RBP14.45□□□□□ -0.1
LDLR-201ENST00000252444 IQANK1A0A1B0GTG1 560 aa14.45□□□□□ -0.1
LDLR-201ENST00000252444 ADCY6O43306 1168 aa14.45□□□□□ -0.1
LDLR-201ENST00000252444 PAPOLAP51003 745 aaKnown RBP14.45□□□□□ -0.1
LDLR-201ENST00000252444 RNF187Q5TA31 235 aaPredicted RBP14.45□□□□□ -0.1
LDLR-201ENST00000252444 TDRD10Q5VZ19 366 aaKnown RBP14.45□□□□□ -0.1
LDLR-201ENST00000252444 HTATIP2Q9BUP3 242 aa14.45□□□□□ -0.1
LDLR-201ENST00000252444 RSAD1Q9HA92 442 aa14.45□□□□□ -0.1
LDLR-201ENST00000252444 PIDD1Q9HB75 910 aa14.45□□□□□ -0.1
LDLR-201ENST00000252444 NSMCE4AQ9NXX6 385 aa14.45□□□□□ -0.1
LDLR-201ENST00000252444 CDR2Q01850 454 aa14.44□□□□□ -0.1
LDLR-201ENST00000252444 NNTQ13423 1086 aa14.44□□□□□ -0.1
LDLR-201ENST00000252444 BOLA3Q53S33 107 aa14.44□□□□□ -0.1
LDLR-201ENST00000252444 NAA35Q5VZE5 725 aa14.44□□□□□ -0.1
LDLR-201ENST00000252444 ATRIPQ8WXE1 791 aa14.44□□□□□ -0.1
LDLR-201ENST00000252444 NIFKQ9BYG3 293 aaKnown RBP14.44□□□□□ -0.1
LDLR-201ENST00000252444 MOXD2PA6NHM9 499 aa14.44□□□□□ -0.1
LDLR-201ENST00000252444 SPAG6O75602 509 aa14.44□□□□□ -0.1
LDLR-201ENST00000252444 CRYBB1P53674 252 aaPredicted RBP14.44□□□□□ -0.1
LDLR-201ENST00000252444 NCKAP1LP55160 1127 aa14.44□□□□□ -0.1
LDLR-201ENST00000252444 CYP27A1Q02318 531 aa14.44□□□□□ -0.1
LDLR-201ENST00000252444 ELF2Q15723 593 aa14.44□□□□□ -0.1
LDLR-201ENST00000252444 C1orf186Q6ZWK4 172 aa14.44□□□□□ -0.1
LDLR-201ENST00000252444 ATP6V0D2Q8N8Y2 350 aa14.44□□□□□ -0.1
LDLR-201ENST00000252444 ZFP91Q96JP5 570 aaPredicted RBP14.44□□□□□ -0.1
LDLR-201ENST00000252444 MBOAT7Q96N66 472 aa14.44□□□□□ -0.1
LDLR-201ENST00000252444 PRDM5Q9NQX1 630 aaPredicted RBP14.44□□□□□ -0.1
LDLR-201ENST00000252444 TMCO4Q5TGY1 634 aa14.44□□□□□ -0.1
LDLR-201ENST00000252444 ACAD10Q6JQN1 1059 aa14.44□□□□□ -0.1
LDLR-201ENST00000252444 LRRC71Q8N4P6 559 aa14.44□□□□□ -0.1
LDLR-201ENST00000252444 CCNYQ8ND76 341 aa14.44□□□□□ -0.1
LDLR-201ENST00000252444 SCFD1Q8WVM8 642 aa14.44□□□□□ -0.1
LDLR-201ENST00000252444 TMEM169Q96HH4 297 aa14.44□□□□□ -0.1
LDLR-201ENST00000252444 PCDHB12Q9Y5F1 795 aa14.44□□□□□ -0.1
LDLR-201ENST00000252444 RPL9P32969 192 aaKnown RBP14.44□□□□□ -0.1
LDLR-201ENST00000252444 ALDH1A3P47895 512 aa14.44□□□□□ -0.1
LDLR-201ENST00000252444 RASSF2P50749 326 aa14.44□□□□□ -0.1
LDLR-201ENST00000252444 MRPS6P82932 125 aaKnown RBP14.44□□□□□ -0.1
LDLR-201ENST00000252444 ROR1Q01973 937 aa14.44□□□□□ -0.1
LDLR-201ENST00000252444 ST3GAL1Q11201 340 aa14.44□□□□□ -0.1
LDLR-201ENST00000252444 NLGN2Q8NFZ4 835 aa14.44□□□□□ -0.1
LDLR-201ENST00000252444 HPS3Q969F9 1004 aa14.44□□□□□ -0.1
LDLR-201ENST00000252444 VPS18Q9P253 973 aa14.44□□□□□ -0.1
LDLR-201ENST00000252444 PLAGL2Q9UPG8 496 aa14.44□□□□□ -0.1
LDLR-201ENST00000252444 SNCAIPQ9Y6H5 919 aa14.44□□□□□ -0.1
LDLR-201ENST00000252444 CASP1P29466 404 aa14.43□□□□□ -0.1
LDLR-201ENST00000252444 GRIK1P39086 918 aa14.43□□□□□ -0.1
LDLR-201ENST00000252444 ARL1P40616 181 aaPredicted RBP14.43□□□□□ -0.1
LDLR-201ENST00000252444 ACOT2P49753 483 aa14.43□□□□□ -0.1
LDLR-201ENST00000252444 KAZNQ674X7 775 aa14.43□□□□□ -0.1
LDLR-201ENST00000252444 TRIM59Q8IWR1 403 aa14.43□□□□□ -0.1
LDLR-201ENST00000252444 YAF2Q8IY57 180 aa14.43□□□□□ -0.1
LDLR-201ENST00000252444 UXTQ9UBK9 157 aaPredicted RBP14.43□□□□□ -0.1
LDLR-201ENST00000252444 GPD1P21695 349 aa14.43□□□□□ -0.1
LDLR-201ENST00000252444 PDK2Q15119 407 aa14.43□□□□□ -0.1
LDLR-201ENST00000252444 C6orf118Q5T5N4 469 aa14.43□□□□□ -0.1
LDLR-201ENST00000252444 PPP1R12CQ9BZL4 782 aa14.43□□□□□ -0.1
LDLR-201ENST00000252444 TRIM31Q9BZY9 425 aa14.43□□□□□ -0.1
LDLR-201ENST00000252444 BRD8Q9H0E9 1235 aa14.43□□□□□ -0.1
LDLR-201ENST00000252444 EVI5O60447 810 aa14.43□□□□□ -0.1
LDLR-201ENST00000252444 C1orf228Q6PIY5 440 aa14.43□□□□□ -0.1
LDLR-201ENST00000252444 CCDC13Q8IYE1 715 aa14.43□□□□□ -0.1
LDLR-201ENST00000252444 VPS52Q8N1B4 723 aa14.43□□□□□ -0.1
LDLR-201ENST00000252444 ASAP3Q8TDY4 903 aa14.43□□□□□ -0.1
LDLR-201ENST00000252444 CHAMP1Q96JM3 812 aa14.43□□□□□ -0.1
LDLR-201ENST00000252444 TJP2Q9UDY2 1190 aa14.43□□□□□ -0.1
LDLR-201ENST00000252444 RWDD3Q9Y3V2 267 aa14.43□□□□□ -0.1
LDLR-201ENST00000252444 CES2O00748 559 aa14.43□□□□□ -0.1
LDLR-201ENST00000252444 HSPA8P11142 646 aaKnown RBP14.43□□□□□ -0.1
LDLR-201ENST00000252444 CLK2P49760 499 aaKnown RBP14.43□□□□□ -0.1
LDLR-201ENST00000252444 C1orf131Q8NDD1 294 aaKnown RBP14.43□□□□□ -0.1
LDLR-201ENST00000252444 TTC16Q8NEE8 873 aa14.43□□□□□ -0.1
LDLR-201ENST00000252444 NR2E3Q9Y5X4 410 aa14.43□□□□□ -0.1
LDLR-201ENST00000252444 DUSP11O75319 330 aaKnown RBP14.42□□□□□ -0.1
LDLR-201ENST00000252444 YY1P25490 414 aa14.42□□□□□ -0.1
LDLR-201ENST00000252444 MCL1Q07820 350 aa14.42□□□□□ -0.1
LDLR-201ENST00000252444 CC2D1AQ6P1N0 951 aaPredicted RBP14.42□□□□□ -0.1
LDLR-201ENST00000252444 TMEM199Q8N511 208 aa14.42□□□□□ -0.1
LDLR-201ENST00000252444 SCG3Q8WXD2 468 aaKnown RBP14.42□□□□□ -0.1
LDLR-201ENST00000252444 TSSK1BQ9BXA7 367 aa14.42□□□□□ -0.1
LDLR-201ENST00000252444 C2CD2Q9Y426 696 aa14.42□□□□□ -0.1
LDLR-201ENST00000252444 CYP26A1O43174 497 aa14.42□□□□□ -0.1
LDLR-201ENST00000252444 PRLRP16471 622 aa14.42□□□□□ -0.1
LDLR-201ENST00000252444 ADORA2BP29275 332 aa14.42□□□□□ -0.1
LDLR-201ENST00000252444 GUCY2DQ02846 1103 aa14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms