RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 GNASQ5JWF2 1037 aa13.43□□□□□ -0.26
USP40-201ENST00000251722 TEDDM1Q5T9Z0 273 aa13.43□□□□□ -0.26
USP40-201ENST00000251722 OLFML2BQ68BL8 750 aa13.43□□□□□ -0.26
USP40-201ENST00000251722 TMEM154Q6P9G4 183 aa13.43□□□□□ -0.26
USP40-201ENST00000251722 GPC2Q8N158 579 aa13.43□□□□□ -0.26
USP40-201ENST00000251722 TMCO5AQ8N6Q1 288 aa13.43□□□□□ -0.26
USP40-201ENST00000251722 DPF2Q92785 391 aa13.43□□□□□ -0.26
USP40-201ENST00000251722 NT5C1AQ9BXI3 368 aa13.43□□□□□ -0.26
USP40-201ENST00000251722 TRIM9Q9C026 710 aa13.43□□□□□ -0.26
USP40-201ENST00000251722 JMJD4Q9H9V9 463 aa13.43□□□□□ -0.26
USP40-201ENST00000251722 TMEM8AQ9HCN3 771 aa13.43□□□□□ -0.26
USP40-201ENST00000251722 LIMA1Q9UHB6 759 aaKnown RBP13.43□□□□□ -0.26
USP40-201ENST00000251722 FBXO2Q9UK22 296 aaPredicted RBP13.43□□□□□ -0.26
USP40-201ENST00000251722 SH3BP1Q9Y3L3 701 aa13.43□□□□□ -0.26
USP40-201ENST00000251722 SOWAHDA6NJG2 315 aa13.42□□□□□ -0.26
USP40-201ENST00000251722 AMPD2Q01433 879 aa13.42□□□□□ -0.26
USP40-201ENST00000251722 TMEM132BQ14DG7 1078 aa13.42□□□□□ -0.26
USP40-201ENST00000251722 TMTC4Q5T4D3 741 aa13.42□□□□□ -0.26
USP40-201ENST00000251722 PPHLN1Q8NEY8 458 aaKnown RBP13.42□□□□□ -0.26
USP40-201ENST00000251722 PPP1R14BQ96C90 147 aa13.42□□□□□ -0.26
USP40-201ENST00000251722 UPF3AQ9H1J1 476 aaKnown RBP13.42□□□□□ -0.26
USP40-201ENST00000251722 SNAP23O00161 211 aa13.42□□□□□ -0.26
USP40-201ENST00000251722 TAF6P49848 677 aa13.42□□□□□ -0.26
USP40-201ENST00000251722 RAP1GDS1P52306 607 aa13.42□□□□□ -0.26
USP40-201ENST00000251722 YWHAHQ04917 246 aaPredicted RBP13.42□□□□□ -0.26
USP40-201ENST00000251722 PLD1Q13393 1074 aa13.42□□□□□ -0.26
USP40-201ENST00000251722 ANKS3Q6ZW76 656 aa13.42□□□□□ -0.26
USP40-201ENST00000251722 ACAD11Q709F0 780 aa13.42□□□□□ -0.26
USP40-201ENST00000251722 ATP11CQ8NB49 1132 aa13.42□□□□□ -0.26
USP40-201ENST00000251722 TSPAN17Q96FV3 270 aa13.42□□□□□ -0.26
USP40-201ENST00000251722 CLMNQ96JQ2 1002 aa13.42□□□□□ -0.26
USP40-201ENST00000251722 SLITRK1Q96PX8 696 aa13.42□□□□□ -0.26
USP40-201ENST00000251722 CDK5RAP1Q96SZ6 601 aaKnown RBP13.42□□□□□ -0.26
USP40-201ENST00000251722 APEX2Q9UBZ4 518 aa13.42□□□□□ -0.26
USP40-201ENST00000251722 PACSIN2Q9UNF0 486 aaPredicted RBP13.42□□□□□ -0.26
USP40-201ENST00000251722 ITIH6Q6UXX5 1313 aa13.42□□□□□ -0.26
USP40-201ENST00000251722 PRRG1O14668 218 aa13.42□□□□□ -0.26
USP40-201ENST00000251722 HGSO14964 777 aaPredicted RBP13.42□□□□□ -0.26
USP40-201ENST00000251722 SPARCL1Q14515 664 aa13.42□□□□□ -0.26
USP40-201ENST00000251722 FRMD8P1Q9BZ68 369 aaPredicted RBP13.42□□□□□ -0.26
USP40-201ENST00000251722 GNGT2O14610 69 aa13.42□□□□□ -0.26
USP40-201ENST00000251722 BNIP3LO60238 219 aa13.42□□□□□ -0.26
USP40-201ENST00000251722 TGFB3P10600 412 aa13.42□□□□□ -0.26
USP40-201ENST00000251722 RFX5P48382 616 aaPredicted RBP13.42□□□□□ -0.26
USP40-201ENST00000251722 PRAMEP78395 509 aa13.42□□□□□ -0.26
USP40-201ENST00000251722 KBTBD12Q3ZCT8 623 aa13.42□□□□□ -0.26
USP40-201ENST00000251722 NOP9Q86U38 636 aaKnown RBP13.42□□□□□ -0.26
USP40-201ENST00000251722 REM2Q8IYK8 340 aaPredicted RBP13.42□□□□□ -0.26
USP40-201ENST00000251722 ULK4Q96C45 1275 aa13.42□□□□□ -0.26
USP40-201ENST00000251722 VWDEQ8N2E2 1590 aa13.42□□□□□ -0.26
USP40-201ENST00000251722 SSU72P8A0A1W2PR75 194 aa13.42□□□□□ -0.26
USP40-201ENST00000251722 ZNF394Q53GI3 561 aa13.42□□□□□ -0.26
USP40-201ENST00000251722 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.42□□□□□ -0.26
USP40-201ENST00000251722 FRMD8Q9BZ67 464 aaPredicted RBP13.42□□□□□ -0.26
USP40-201ENST00000251722 SCHIP1Q9P0W5 487 aaPredicted RBP13.42□□□□□ -0.26
USP40-201ENST00000251722 TOM1L1O75674 476 aa13.41□□□□□ -0.26
USP40-201ENST00000251722 HSPA4LO95757 839 aa13.41□□□□□ -0.26
USP40-201ENST00000251722 SULT1E1P49888 294 aa13.41□□□□□ -0.26
USP40-201ENST00000251722 NCOA4Q13772 614 aa13.41□□□□□ -0.26
USP40-201ENST00000251722 EFCAB12Q6NXP0 572 aa13.41□□□□□ -0.26
USP40-201ENST00000251722 TAB3Q8N5C8 712 aaPredicted RBP13.41□□□□□ -0.26
USP40-201ENST00000251722 SNX19Q92543 992 aa13.41□□□□□ -0.26
USP40-201ENST00000251722 VIPAS39Q9H9C1 493 aa13.41□□□□□ -0.26
USP40-201ENST00000251722 SENP1Q9P0U3 644 aa13.41□□□□□ -0.26
USP40-201ENST00000251722 KANSL3Q9P2N6 904 aa13.41□□□□□ -0.26
USP40-201ENST00000251722 CAPN11Q9UMQ6 739 aa13.41□□□□□ -0.26
USP40-201ENST00000251722 ATP11BQ9Y2G3 1177 aa13.41□□□□□ -0.26
USP40-201ENST00000251722 BCORL1Q5H9F3 1711 aa13.41□□□□□ -0.26
USP40-201ENST00000251722 FAM205AQ6ZU69 1335 aa13.41□□□□□ -0.26
USP40-201ENST00000251722 TULP2O00295 520 aa13.41□□□□□ -0.26
USP40-201ENST00000251722 DIAPH2O60879 1101 aa13.41□□□□□ -0.26
USP40-201ENST00000251722 PALMO75781 387 aa13.41□□□□□ -0.26
USP40-201ENST00000251722 FTLP02792 175 aaPredicted RBP13.41□□□□□ -0.26
USP40-201ENST00000251722 SERPINB3P29508 390 aa13.41□□□□□ -0.26
USP40-201ENST00000251722 COPS2P61201 443 aa13.41□□□□□ -0.26
USP40-201ENST00000251722 UCMAQ8WVF2 138 aa13.41□□□□□ -0.26
USP40-201ENST00000251722 MTBPQ96DY7 904 aa13.41□□□□□ -0.26
USP40-201ENST00000251722 FAM129AQ9BZQ8 928 aa13.41□□□□□ -0.26
USP40-201ENST00000251722 MOSPD1Q9UJG1 213 aa13.41□□□□□ -0.26
USP40-201ENST00000251722 TMX2Q9Y320 296 aa13.41□□□□□ -0.26
USP40-201ENST00000251722 DCTN3O75935 186 aa13.41□□□□□ -0.26
USP40-201ENST00000251722 RALBP11234 206 aa13.41□□□□□ -0.26
USP40-201ENST00000251722 ROR2Q01974 943 aaKnown RBP13.41□□□□□ -0.26
USP40-201ENST00000251722 ART3Q13508 389 aa13.41□□□□□ -0.26
USP40-201ENST00000251722 PTK2BQ14289 1009 aa13.41□□□□□ -0.26
USP40-201ENST00000251722 SPATA21Q7Z572 469 aa13.41□□□□□ -0.26
USP40-201ENST00000251722 SCFD1Q8WVM8 642 aa13.41□□□□□ -0.26
USP40-201ENST00000251722 SPATA17Q96L03 361 aa13.41□□□□□ -0.26
USP40-201ENST00000251722 TMEM39BQ9GZU3 492 aa13.41□□□□□ -0.26
USP40-201ENST00000251722 CCDC144BQ3MJ40 725 aa13.41□□□□□ -0.26
USP40-201ENST00000251722 ACCSLQ4AC99 568 aa13.41□□□□□ -0.26
USP40-201ENST00000251722 MEI1Q5TIA1 1274 aa13.41□□□□□ -0.26
USP40-201ENST00000251722 CNTNAP5Q8WYK1 1306 aa13.41□□□□□ -0.26
USP40-201ENST00000251722 TRIM63Q969Q1 353 aa13.41□□□□□ -0.26
USP40-201ENST00000251722 SNF8Q96H20 258 aa13.41□□□□□ -0.26
USP40-201ENST00000251722 MRIQ9BWK5 157 aa13.41□□□□□ -0.26
USP40-201ENST00000251722 CPVLQ9H3G5 476 aa13.41□□□□□ -0.26
USP40-201ENST00000251722 SAYSD1Q9NPB0 183 aa13.41□□□□□ -0.26
USP40-201ENST00000251722 MCM8Q9UJA3 840 aa13.41□□□□□ -0.26
USP40-201ENST00000251722 VPS9D1Q9Y2B5 631 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms