RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 EME2A4GXA9 379 aaPredicted RBP13.17□□□□□ -0.3
NUP88-201ENST00000225696 MUTP22033 750 aa13.17□□□□□ -0.3
NUP88-201ENST00000225696 CNGA1P29973 690 aa13.17□□□□□ -0.3
NUP88-201ENST00000225696 IL9RQ01113 521 aa13.17□□□□□ -0.3
NUP88-201ENST00000225696 TAF11Q15544 211 aa13.17□□□□□ -0.3
NUP88-201ENST00000225696 DACT2Q5SW24 774 aa13.17□□□□□ -0.3
NUP88-201ENST00000225696 FAM102BQ5T8I3 360 aa13.17□□□□□ -0.3
NUP88-201ENST00000225696 PCNX4Q63HM2 1172 aa13.17□□□□□ -0.3
NUP88-201ENST00000225696 CDCA2Q69YH5 1023 aaPredicted RBP13.17□□□□□ -0.3
NUP88-201ENST00000225696 SCARA3Q6AZY7 606 aa13.17□□□□□ -0.3
NUP88-201ENST00000225696 ZNF365Q70YC5 407 aa13.17□□□□□ -0.3
NUP88-201ENST00000225696 FBXL13Q8NEE6 735 aa13.17□□□□□ -0.3
NUP88-201ENST00000225696 SUPT20HQ8NEM7 779 aa13.17□□□□□ -0.3
NUP88-201ENST00000225696 TMEM174Q8WUU8 243 aa13.17□□□□□ -0.3
NUP88-201ENST00000225696 VTI1AQ96AJ9 217 aa13.17□□□□□ -0.3
NUP88-201ENST00000225696 PRMT6Q96LA8 375 aaPredicted RBP13.17□□□□□ -0.3
NUP88-201ENST00000225696 NT5C1BQ96P26 610 aa13.17□□□□□ -0.3
NUP88-201ENST00000225696 LBHD1Q9BQE6 289 aaPredicted RBP13.17□□□□□ -0.3
NUP88-201ENST00000225696 LRMDAQ9H2I8 198 aa13.17□□□□□ -0.3
NUP88-201ENST00000225696 BATF3Q9NR55 127 aa13.17□□□□□ -0.3
NUP88-201ENST00000225696 USTQ9Y2C2 406 aa13.17□□□□□ -0.3
NUP88-201ENST00000225696 COQ4Q9Y3A0 265 aa13.17□□□□□ -0.3
NUP88-201ENST00000225696 EXOC1LA0A1B0GW35 172 aa13.16□□□□□ -0.3
NUP88-201ENST00000225696 H0Y3Z8 333 aa13.16□□□□□ -0.3
NUP88-201ENST00000225696 PMM2O15305 246 aa13.16□□□□□ -0.3
NUP88-201ENST00000225696 ENTPD5O75356 428 aa13.16□□□□□ -0.3
NUP88-201ENST00000225696 P4HBP07237 508 aaKnown RBP13.16□□□□□ -0.3
NUP88-201ENST00000225696 YWHABP31946 246 aaKnown RBP13.16□□□□□ -0.3
NUP88-201ENST00000225696 DSG3P32926 999 aa13.16□□□□□ -0.3
NUP88-201ENST00000225696 SKIV2L2P42285 1042 aaKnown RBP13.16□□□□□ -0.3
NUP88-201ENST00000225696 CCNG1P51959 295 aa13.16□□□□□ -0.3
NUP88-201ENST00000225696 WNT7BP56706 349 aa13.16□□□□□ -0.3
NUP88-201ENST00000225696 CCDC15Q0P6D6 951 aa13.16□□□□□ -0.3
NUP88-201ENST00000225696 BLMHQ13867 455 aa13.16□□□□□ -0.3
NUP88-201ENST00000225696 PLEKHG4Q58EX7 1191 aa13.16□□□□□ -0.3
NUP88-201ENST00000225696 CAPRIN2Q6IMN6 1127 aaKnown RBP13.16□□□□□ -0.3
NUP88-201ENST00000225696 SPOPLQ6IQ16 392 aa13.16□□□□□ -0.3
NUP88-201ENST00000225696 PPP1R21Q6ZMI0 780 aa13.16□□□□□ -0.3
NUP88-201ENST00000225696 KRT27Q7Z3Y8 459 aa13.16□□□□□ -0.3
NUP88-201ENST00000225696 LDHDQ86WU2 507 aa13.16□□□□□ -0.3
NUP88-201ENST00000225696 CDAN1Q8IWY9 1227 aa13.16□□□□□ -0.3
NUP88-201ENST00000225696 BSNDQ8WZ55 320 aa13.16□□□□□ -0.3
NUP88-201ENST00000225696 LRRC37BQ96QE4 947 aa13.16□□□□□ -0.3
NUP88-201ENST00000225696 PLCD4Q9BRC7 762 aa13.16□□□□□ -0.3
NUP88-201ENST00000225696 PLVAPQ9BX97 442 aa13.16□□□□□ -0.3
NUP88-201ENST00000225696 TBC1D10AQ9BXI6 508 aa13.16□□□□□ -0.3
NUP88-201ENST00000225696 RANBP17Q9H2T7 1088 aaKnown RBP13.16□□□□□ -0.3
NUP88-201ENST00000225696 TMEM8AQ9HCN3 771 aa13.16□□□□□ -0.3
NUP88-201ENST00000225696 ZNF219Q9P2Y4 722 aaPredicted RBP13.16□□□□□ -0.3
NUP88-201ENST00000225696 NFIBO00712 420 aa13.15□□□□□ -0.3
NUP88-201ENST00000225696 MAP3K13O43283 966 aa13.15□□□□□ -0.3
NUP88-201ENST00000225696 LINGO3P0C6S8 592 aa13.15□□□□□ -0.3
NUP88-201ENST00000225696 GCKP35557 465 aa13.15□□□□□ -0.3
NUP88-201ENST00000225696 PSMC4P43686 418 aa13.15□□□□□ -0.3
NUP88-201ENST00000225696 TUBP50607 506 aa13.15□□□□□ -0.3
NUP88-201ENST00000225696 YARSP54577 528 aaKnown RBP13.15□□□□□ -0.3
NUP88-201ENST00000225696 GAD2Q05329 585 aa13.15□□□□□ -0.3
NUP88-201ENST00000225696 GRIK3Q13003 919 aa13.15□□□□□ -0.3
NUP88-201ENST00000225696 MTM1Q13496 603 aa13.15□□□□□ -0.3
NUP88-201ENST00000225696 STAT4Q14765 748 aa13.15□□□□□ -0.3
NUP88-201ENST00000225696 KAZNQ674X7 775 aa13.15□□□□□ -0.3
NUP88-201ENST00000225696 SYDE1Q6ZW31 735 aaPredicted RBP13.15□□□□□ -0.3
NUP88-201ENST00000225696 GSTA5Q7RTV2 222 aa13.15□□□□□ -0.3
NUP88-201ENST00000225696 ANKRD35Q8N283 1001 aa13.15□□□□□ -0.3
NUP88-201ENST00000225696 TMEM161BQ8NDZ6 487 aa13.15□□□□□ -0.3
NUP88-201ENST00000225696 FBF1Q8TES7 1133 aa13.15□□□□□ -0.3
NUP88-201ENST00000225696 GRK7Q8WTQ7 553 aa13.15□□□□□ -0.3
NUP88-201ENST00000225696 SPIRE2Q8WWL2 714 aa13.15□□□□□ -0.3
NUP88-201ENST00000225696 ZNF516Q92618 1163 aa13.15□□□□□ -0.3
NUP88-201ENST00000225696 NAF1Q96HR8 494 aaKnown RBP13.15□□□□□ -0.3
NUP88-201ENST00000225696 RIT2Q99578 217 aa13.15□□□□□ -0.3
NUP88-201ENST00000225696 C11orf70Q9BRQ4 267 aa13.15□□□□□ -0.3
NUP88-201ENST00000225696 OSBPL8Q9BZF1 889 aa13.15□□□□□ -0.3
NUP88-201ENST00000225696 TRABDQ9H4I3 376 aa13.15□□□□□ -0.3
NUP88-201ENST00000225696 RNPEPL1Q9HAU8 725 aa13.15□□□□□ -0.3
NUP88-201ENST00000225696 DNPEPQ9ULA0 475 aa13.15□□□□□ -0.3
NUP88-201ENST00000225696 TBX20Q9UMR3 447 aa13.15□□□□□ -0.3
NUP88-201ENST00000225696 STARD13Q9Y3M8 1113 aa13.15□□□□□ -0.3
NUP88-201ENST00000225696 ASTN2O75129 1339 aaPredicted RBP13.15□□□□□ -0.3
NUP88-201ENST00000225696 MAGEB2O15479 319 aa13.15□□□□□ -0.3
NUP88-201ENST00000225696 TPBGLP0DKB5 382 aa13.15□□□□□ -0.3
NUP88-201ENST00000225696 MYBL1P10243 752 aa13.15□□□□□ -0.3
NUP88-201ENST00000225696 MAPTP10636 758 aaKnown RBP13.15□□□□□ -0.3
NUP88-201ENST00000225696 PECAM1P16284 738 aaPredicted RBP13.15□□□□□ -0.3
NUP88-201ENST00000225696 SSR1P43307 286 aaKnown RBP13.15□□□□□ -0.3
NUP88-201ENST00000225696 NPTX2P47972 431 aa13.15□□□□□ -0.3
NUP88-201ENST00000225696 NCKAP1LP55160 1127 aa13.15□□□□□ -0.3
NUP88-201ENST00000225696 CAV1Q03135 178 aa13.15□□□□□ -0.3
NUP88-201ENST00000225696 CCNG2Q16589 344 aa13.15□□□□□ -0.3
NUP88-201ENST00000225696 LONP2Q86WA8 852 aa13.15□□□□□ -0.3
NUP88-201ENST00000225696 ZCCHC9Q8N567 271 aaKnown RBP13.15□□□□□ -0.3
NUP88-201ENST00000225696 ACSF2Q96CM8 615 aaPredicted RBP13.15□□□□□ -0.3
NUP88-201ENST00000225696 UBR3Q6ZT12 1888 aa13.15□□□□□ -0.3
NUP88-201ENST00000225696 SLX4Q8IY92 1834 aa13.15□□□□□ -0.3
NUP88-201ENST00000225696 ENO4A6NNW6 628 aa13.14□□□□□ -0.31
NUP88-201ENST00000225696 ATP9AO75110 1047 aa13.14□□□□□ -0.31
NUP88-201ENST00000225696 PROSCO94903 275 aa13.14□□□□□ -0.31
NUP88-201ENST00000225696 CALB2P22676 271 aa13.14□□□□□ -0.31
NUP88-201ENST00000225696 QARSP47897 775 aaKnown RBP13.14□□□□□ -0.31
NUP88-201ENST00000225696 RAD23BP54727 409 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms