RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 TBCKQ8TEA7 893 aa18.07■□□□□ 0.48
CLN3-264ENST00000637985 GATA6Q92908 595 aa18.07■□□□□ 0.48
CLN3-264ENST00000637985 SMARCD2Q92925 531 aa18.07■□□□□ 0.48
CLN3-264ENST00000637985 MSANTD3Q96H12 275 aa18.07■□□□□ 0.48
CLN3-264ENST00000637985 ZSWIM3Q96MP5 696 aa18.07■□□□□ 0.48
CLN3-264ENST00000637985 LHX6Q9UPM6 363 aa18.07■□□□□ 0.48
CLN3-264ENST00000637985 BACE2Q9Y5Z0 518 aa18.07■□□□□ 0.48
CLN3-264ENST00000637985 M0R2N6 131 aa18.06■□□□□ 0.48
CLN3-264ENST00000637985 PTGESO14684 152 aa18.06■□□□□ 0.48
CLN3-264ENST00000637985 ZNF197O14709 1029 aa18.06■□□□□ 0.48
CLN3-264ENST00000637985 GIPC1O14908 333 aa18.06■□□□□ 0.48
CLN3-264ENST00000637985 ZNF263O14978 683 aa18.06■□□□□ 0.48
CLN3-264ENST00000637985 B4GALT5O43286 388 aa18.06■□□□□ 0.48
CLN3-264ENST00000637985 DKC1O60832 514 aaKnown RBP eCLIP18.06■□□□□ 0.48
CLN3-264ENST00000637985 CENPBP07199 599 aaPredicted RBP18.06■□□□□ 0.48
CLN3-264ENST00000637985 SPINK2P20155 84 aa18.06■□□□□ 0.48
CLN3-264ENST00000637985 CCR2P41597 374 aa18.06■□□□□ 0.48
CLN3-264ENST00000637985 FOXC1Q12948 553 aa18.06■□□□□ 0.48
CLN3-264ENST00000637985 NAB2Q15742 525 aa18.06■□□□□ 0.48
CLN3-264ENST00000637985 DGKKQ5KSL6 1271 aa18.06■□□□□ 0.48
CLN3-264ENST00000637985 RNF43Q68DV7 783 aa18.06■□□□□ 0.48
CLN3-264ENST00000637985 CDR2LQ86X02 465 aaPredicted RBP18.06■□□□□ 0.48
CLN3-264ENST00000637985 GAB3Q8WWW8 586 aa18.06■□□□□ 0.48
CLN3-264ENST00000637985 CORO1BQ9BR76 489 aa18.06■□□□□ 0.48
CLN3-264ENST00000637985 SLKQ9H2G2 1235 aaPredicted RBP18.06■□□□□ 0.48
CLN3-264ENST00000637985 SMOC1Q9H4F8 434 aa18.06■□□□□ 0.48
CLN3-264ENST00000637985 PCDHGA5Q9Y5G8 931 aa18.06■□□□□ 0.48
CLN3-264ENST00000637985 GCN1Q92616 2671 aaKnown RBP18.06■□□□□ 0.48
CLN3-264ENST00000637985 PDCD11Q14690 1871 aaKnown RBP18.05■□□□□ 0.48
CLN3-264ENST00000637985 PFKFB2O60825 505 aa18.05■□□□□ 0.48
CLN3-264ENST00000637985 LRG1P02750 347 aa18.05■□□□□ 0.48
CLN3-264ENST00000637985 VIPR2P41587 438 aa18.05■□□□□ 0.48
CLN3-264ENST00000637985 SCRN1Q12765 414 aa18.05■□□□□ 0.48
CLN3-264ENST00000637985 KBTBD6Q86V97 674 aa18.05■□□□□ 0.48
CLN3-264ENST00000637985 MFSD6LQ8IWD5 586 aa18.05■□□□□ 0.48
CLN3-264ENST00000637985 TRPV4Q9HBA0 871 aa18.05■□□□□ 0.48
CLN3-264ENST00000637985 NCANO14594 1321 aa18.04■□□□□ 0.48
CLN3-264ENST00000637985 STK36Q9NRP7 1315 aa18.04■□□□□ 0.48
CLN3-264ENST00000637985 RPP40O75818 363 aaKnown RBP18.04■□□□□ 0.48
CLN3-264ENST00000637985 THP07101 528 aa18.04■□□□□ 0.48
CLN3-264ENST00000637985 P4HBP07237 508 aaKnown RBP18.04■□□□□ 0.48
CLN3-264ENST00000637985 XBP1P17861 261 aa18.04■□□□□ 0.48
CLN3-264ENST00000637985 YWHABP31946 246 aaKnown RBP18.04■□□□□ 0.48
CLN3-264ENST00000637985 ZNF252P-AS1Q0IIN9 211 aa18.04■□□□□ 0.48
CLN3-264ENST00000637985 PPP2R5CQ13362 524 aa18.04■□□□□ 0.48
CLN3-264ENST00000637985 TFDP1Q14186 410 aa18.04■□□□□ 0.48
CLN3-264ENST00000637985 MOXD1Q6UVY6 613 aa18.04■□□□□ 0.48
CLN3-264ENST00000637985 C4orf19Q8IY42 314 aa18.04■□□□□ 0.48
CLN3-264ENST00000637985 ZNF461Q8TAF7 563 aa18.04■□□□□ 0.48
CLN3-264ENST00000637985 MTRQ99707 1265 aa18.04■□□□□ 0.48
CLN3-264ENST00000637985 NFKBIZQ9BYH8 718 aa18.04■□□□□ 0.48
CLN3-264ENST00000637985 C8orf33Q9H7E9 229 aaPredicted RBP18.04■□□□□ 0.48
CLN3-264ENST00000637985 XPNPEP1Q9NQW7 623 aa18.04■□□□□ 0.48
CLN3-264ENST00000637985 VPS45Q9NRW7 570 aa18.04■□□□□ 0.48
CLN3-264ENST00000637985 VAV3Q9UKW4 847 aa18.04■□□□□ 0.48
CLN3-264ENST00000637985 TPCN1Q9ULQ1 816 aa18.04■□□□□ 0.48
CLN3-264ENST00000637985 CCDC163A0A0D9SF12 145 aa18.03■□□□□ 0.48
CLN3-264ENST00000637985 TAF4O00268 1085 aa18.03■□□□□ 0.48
CLN3-264ENST00000637985 MOSPD3O75425 235 aa18.03■□□□□ 0.48
CLN3-264ENST00000637985 ABLIM3O94929 683 aa18.03■□□□□ 0.48
CLN3-264ENST00000637985 TOP3BO95985 862 aaKnown RBP18.03■□□□□ 0.48
CLN3-264ENST00000637985 IGFBP6P24592 240 aaPredicted RBP18.03■□□□□ 0.48
CLN3-264ENST00000637985 MPLP40238 635 aa18.03■□□□□ 0.48
CLN3-264ENST00000637985 CAPSQ13938 189 aa18.03■□□□□ 0.48
CLN3-264ENST00000637985 NPY5RQ15761 445 aa18.03■□□□□ 0.48
CLN3-264ENST00000637985 PDZD4Q76G19 769 aaPredicted RBP18.03■□□□□ 0.48
CLN3-264ENST00000637985 OTUD6AQ7L8S5 288 aa18.03■□□□□ 0.48
CLN3-264ENST00000637985 CSGALNACT1Q8TDX6 532 aa18.03■□□□□ 0.48
CLN3-264ENST00000637985 ZC3H10Q96K80 434 aaKnown RBP18.03■□□□□ 0.48
CLN3-264ENST00000637985 AIFM3Q96NN9 605 aa18.03■□□□□ 0.48
CLN3-264ENST00000637985 CXCL16Q9H2A7 254 aa18.03■□□□□ 0.48
CLN3-264ENST00000637985 ARID2Q68CP9 1835 aa18.02■□□□□ 0.48
CLN3-264ENST00000637985 SLC38A8A6NNN8 435 aa18.02■□□□□ 0.48
CLN3-264ENST00000637985 TMEM189-UBE2V1I3L0A0 370 aa18.02■□□□□ 0.48
CLN3-264ENST00000637985 SOX9P48436 509 aa18.02■□□□□ 0.48
CLN3-264ENST00000637985 ROR1Q01973 937 aa18.02■□□□□ 0.48
CLN3-264ENST00000637985 ITPR1Q14643 2758 aa18.02■□□□□ 0.48
CLN3-264ENST00000637985 XKR9Q5GH70 373 aa18.02■□□□□ 0.48
CLN3-264ENST00000637985 CYP4A22Q5TCH4 519 aa18.02■□□□□ 0.48
CLN3-264ENST00000637985 TCEAL6Q6IPX3 200 aa18.02■□□□□ 0.48
CLN3-264ENST00000637985 SLC8B1Q6J4K2 584 aa18.02■□□□□ 0.48
CLN3-264ENST00000637985 TXNDC11Q6PKC3 985 aa18.02■□□□□ 0.48
CLN3-264ENST00000637985 CD300LGQ6UXG3 332 aa18.02■□□□□ 0.48
CLN3-264ENST00000637985 ANKS3Q6ZW76 656 aa18.02■□□□□ 0.48
CLN3-264ENST00000637985 KRT25Q7Z3Z0 450 aa18.02■□□□□ 0.48
CLN3-264ENST00000637985 TCEAL8Q8IYN2 117 aa18.02■□□□□ 0.48
CLN3-264ENST00000637985 SYNPOQ8N3V7 929 aa18.02■□□□□ 0.48
CLN3-264ENST00000637985 ZSCAN18Q8TBC5 510 aaPredicted RBP18.02■□□□□ 0.48
CLN3-264ENST00000637985 ASAP3Q8TDY4 903 aa18.02■□□□□ 0.48
CLN3-264ENST00000637985 ZCCHC14Q8WYQ9 949 aaKnown RBP18.02■□□□□ 0.48
CLN3-264ENST00000637985 TCEAL3Q969E4 200 aa18.02■□□□□ 0.48
CLN3-264ENST00000637985 DDX27Q96GQ7 796 aaKnown RBP18.02■□□□□ 0.48
CLN3-264ENST00000637985 SMG1Q96Q15 3661 aaKnown RBP18.02■□□□□ 0.47
CLN3-264ENST00000637985 FLNBO75369 2602 aaKnown RBP18.02■□□□□ 0.47
CLN3-264ENST00000637985 MYBPHLA2RUH7 354 aa18.01■□□□□ 0.47
CLN3-264ENST00000637985 HEPACAM2A8MVW5 462 aa18.01■□□□□ 0.47
CLN3-264ENST00000637985 PRRG1O14668 218 aa18.01■□□□□ 0.47
CLN3-264ENST00000637985 ZBTB39O15060 712 aa18.01■□□□□ 0.47
CLN3-264ENST00000637985 CHADO15335 359 aa18.01■□□□□ 0.47
CLN3-264ENST00000637985 AKAP3O75969 853 aa18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms