RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 ASAP3Q8TDY4 903 aa19.72■□□□□ 0.75
CLN3-263ENST00000637871 EPS8L1Q8TE68 723 aa19.72■□□□□ 0.75
CLN3-263ENST00000637871 ATP8B4Q8TF62 1192 aa19.72■□□□□ 0.75
CLN3-263ENST00000637871 TMEM143Q96AN5 459 aa19.72■□□□□ 0.75
CLN3-263ENST00000637871 BUD13Q9BRD0 619 aaKnown RBP eCLIP19.72■□□□□ 0.753e-6■□□□□ 10.1
CLN3-263ENST00000637871 SMARCAD1Q9H4L7 1026 aa19.72■□□□□ 0.75
CLN3-263ENST00000637871 C1orf112Q9NSG2 853 aa19.72■□□□□ 0.75
CLN3-263ENST00000637871 SEPT11Q9NVA2 429 aaKnown RBP19.72■□□□□ 0.75
CLN3-263ENST00000637871 A0A0B4J269 797 aa19.71■□□□□ 0.75
CLN3-263ENST00000637871 PGRMC1O00264 195 aaKnown RBP19.71■□□□□ 0.75
CLN3-263ENST00000637871 LGALS2P05162 132 aa19.71■□□□□ 0.75
CLN3-263ENST00000637871 CST5P28325 142 aaPredicted RBP19.71■□□□□ 0.75
CLN3-263ENST00000637871 PDE6CP51160 858 aa19.71■□□□□ 0.75
CLN3-263ENST00000637871 CDR2Q01850 454 aa19.71■□□□□ 0.75
CLN3-263ENST00000637871 ZACNQ401N2 412 aa19.71■□□□□ 0.75
CLN3-263ENST00000637871 ZBTB8OSQ8IWT0 167 aa19.71■□□□□ 0.75
CLN3-263ENST00000637871 ZSWIM2Q8NEG5 633 aa19.71■□□□□ 0.75
CLN3-263ENST00000637871 SEMA4DQ92854 862 aa19.71■□□□□ 0.75
CLN3-263ENST00000637871 KREMEN1Q96MU8 473 aa19.71■□□□□ 0.75
CLN3-263ENST00000637871 RPS6KC1Q96S38 1066 aa19.71■□□□□ 0.75
CLN3-263ENST00000637871 LRRC1Q9BTT6 524 aa19.71■□□□□ 0.75
CLN3-263ENST00000637871 NOCTQ9UK39 431 aaKnown RBP19.71■□□□□ 0.75
CLN3-263ENST00000637871 IGKV6-21A0A0C4DH24 114 aa19.7■□□□□ 0.74
CLN3-263ENST00000637871 TMCO5BA8MYB1 307 aa19.7■□□□□ 0.74
CLN3-263ENST00000637871 FTLP02792 175 aaPredicted RBP19.7■□□□□ 0.74
CLN3-263ENST00000637871 MARK3P27448 753 aa19.7■□□□□ 0.74
CLN3-263ENST00000637871 ACLYP53396 1101 aa19.7■□□□□ 0.74
CLN3-263ENST00000637871 EPHB4P54760 987 aa19.7■□□□□ 0.74
CLN3-263ENST00000637871 NKX3-2P78367 333 aa19.7■□□□□ 0.74
CLN3-263ENST00000637871 PURAQ00577 322 aaKnown RBP19.7■□□□□ 0.74
CLN3-263ENST00000637871 TFDP1Q14186 410 aa19.7■□□□□ 0.74
CLN3-263ENST00000637871 DGKDQ16760 1214 aa19.7■□□□□ 0.74
CLN3-263ENST00000637871 HSP90B2PQ58FF3 399 aa19.7■□□□□ 0.74
CLN3-263ENST00000637871 ARRDC4Q8NCT1 418 aa19.7■□□□□ 0.74
CLN3-263ENST00000637871 TAS1R2Q8TE23 839 aa19.7■□□□□ 0.74
CLN3-263ENST00000637871 GLG1Q92896 1179 aa19.7■□□□□ 0.74
CLN3-263ENST00000637871 MRPL4Q9BYD3 311 aaKnown RBP19.7■□□□□ 0.74
CLN3-263ENST00000637871 CARD9Q9H257 536 aa19.7■□□□□ 0.74
CLN3-263ENST00000637871 RBM12Q9NTZ6 932 aaKnown RBP19.7■□□□□ 0.74
CLN3-263ENST00000637871 UVRAGQ9P2Y5 699 aa19.7■□□□□ 0.74
CLN3-263ENST00000637871 KBTBD13C9JR72 458 aa19.69■□□□□ 0.74
CLN3-263ENST00000637871 TULP1O00294 542 aaPredicted RBP19.69■□□□□ 0.74
CLN3-263ENST00000637871 DNM1LO00429 736 aa19.69■□□□□ 0.74
CLN3-263ENST00000637871 HBP1O60381 514 aa19.69■□□□□ 0.74
CLN3-263ENST00000637871 C4BPAP04003 597 aaKnown RBP19.69■□□□□ 0.74
CLN3-263ENST00000637871 DLATP10515 647 aaKnown RBP19.69■□□□□ 0.74
CLN3-263ENST00000637871 HOXD8P13378 290 aaPredicted RBP19.69■□□□□ 0.74
CLN3-263ENST00000637871 TBXAS1P24557 533 aaPredicted RBP19.69■□□□□ 0.74
CLN3-263ENST00000637871 CDCA2Q69YH5 1023 aaPredicted RBP19.69■□□□□ 0.74
CLN3-263ENST00000637871 TRIM11Q96F44 468 aa19.69■□□□□ 0.74
CLN3-263ENST00000637871 PSMB7Q99436 277 aa19.69■□□□□ 0.74
CLN3-263ENST00000637871 CGRRF1Q99675 332 aa19.69■□□□□ 0.74
CLN3-263ENST00000637871 C16orf70Q9BSU1 422 aa19.69■□□□□ 0.74
CLN3-263ENST00000637871 MSTO1Q9BUK6 570 aa19.69■□□□□ 0.74
CLN3-263ENST00000637871 A0A1W2PQ45 241 aaPredicted RBP19.69■□□□□ 0.74
CLN3-263ENST00000637871 A0A1W2PQY0 241 aa19.69■□□□□ 0.74
CLN3-263ENST00000637871 CEP104O60308 925 aa19.69■□□□□ 0.74
CLN3-263ENST00000637871 CYP11B1P15538 503 aa19.69■□□□□ 0.74
CLN3-263ENST00000637871 TNNI1P19237 187 aa19.69■□□□□ 0.74
CLN3-263ENST00000637871 USP8P40818 1118 aa19.69■□□□□ 0.74
CLN3-263ENST00000637871 AARSP49588 968 aaKnown RBP eCLIP19.69■□□□□ 0.74
CLN3-263ENST00000637871 METTL13Q8N6R0 699 aa19.69■□□□□ 0.74
CLN3-263ENST00000637871 AENQ8WTP8 325 aaKnown RBP19.69■□□□□ 0.74
CLN3-263ENST00000637871 KAT2BQ92831 832 aa19.69■□□□□ 0.74
CLN3-263ENST00000637871 PKNOX2Q96KN3 472 aa19.69■□□□□ 0.74
CLN3-263ENST00000637871 GDF3Q9NR23 364 aa19.69■□□□□ 0.74
CLN3-263ENST00000637871 PCDHB2Q9Y5E7 798 aa19.69■□□□□ 0.74
CLN3-263ENST00000637871 CYP26A1O43174 497 aa19.68■□□□□ 0.74
CLN3-263ENST00000637871 BUB1BO60566 1050 aaPredicted RBP19.68■□□□□ 0.74
CLN3-263ENST00000637871 PPFIA4O75335 1185 aa19.68■□□□□ 0.74
CLN3-263ENST00000637871 TOM1L1O75674 476 aa19.68■□□□□ 0.74
CLN3-263ENST00000637871 POU5F1Q01860 360 aaKnown RBP19.68■□□□□ 0.74
CLN3-263ENST00000637871 POU5F1BQ06416 359 aa19.68■□□□□ 0.74
CLN3-263ENST00000637871 PAK2Q13177 524 aa19.68■□□□□ 0.74
CLN3-263ENST00000637871 CAPSQ13938 189 aa19.68■□□□□ 0.74
CLN3-263ENST00000637871 TRIM72Q6ZMU5 477 aa19.68■□□□□ 0.74
CLN3-263ENST00000637871 UBL4BQ8N7F7 174 aa19.68■□□□□ 0.74
CLN3-263ENST00000637871 FAM71BQ8TC56 605 aa19.68■□□□□ 0.74
CLN3-263ENST00000637871 PAWRQ96IZ0 340 aaKnown RBP19.68■□□□□ 0.74
CLN3-263ENST00000637871 THAP2Q9H0W7 228 aa19.68■□□□□ 0.74
CLN3-263ENST00000637871 SLITRK6Q9H5Y7 841 aa19.68■□□□□ 0.74
CLN3-263ENST00000637871 RBAKQ9NYW8 714 aaPredicted RBP19.68■□□□□ 0.74
CLN3-263ENST00000637871 GTF3C4Q9UKN8 822 aa19.68■□□□□ 0.74
CLN3-263ENST00000637871 CLDN3O15551 220 aa19.67■□□□□ 0.74
CLN3-263ENST00000637871 CYP1A2P05177 515 aa19.67■□□□□ 0.74
CLN3-263ENST00000637871 MYBL1P10243 752 aa19.67■□□□□ 0.74
CLN3-263ENST00000637871 CHRNB2P17787 502 aa19.67■□□□□ 0.74
CLN3-263ENST00000637871 TERF2Q15554 542 aa19.67■□□□□ 0.74
CLN3-263ENST00000637871 NOP9Q86U38 636 aaKnown RBP19.67■□□□□ 0.74
CLN3-263ENST00000637871 PCSK9Q8NBP7 692 aaKnown RBP19.67■□□□□ 0.74
CLN3-263ENST00000637871 CCDC26Q8TAB7 109 aa19.67■□□□□ 0.74
CLN3-263ENST00000637871 CAVIN3Q969G5 261 aa19.67■□□□□ 0.74
CLN3-263ENST00000637871 MS4A14Q96JA4 679 aa19.67■□□□□ 0.74
CLN3-263ENST00000637871 POP1Q99575 1024 aaKnown RBP19.67■□□□□ 0.74
CLN3-263ENST00000637871 CTTNBP2NLQ9P2B4 639 aa19.67■□□□□ 0.74
CLN3-263ENST00000637871 PHF24Q9UPV7 400 aa19.67■□□□□ 0.74
CLN3-263ENST00000637871 SCN10AQ9Y5Y9 1956 aa19.67■□□□□ 0.74
CLN3-263ENST00000637871 SIP14410 1827 aa19.67■□□□□ 0.74
CLN3-263ENST00000637871 ZEB2O60315 1214 aa19.66■□□□□ 0.74
CLN3-263ENST00000637871 F2P00734 622 aa19.66■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms