RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 EVI5O60447 810 aa19.84■□□□□ 0.77
CLN3-254ENST00000637050 GFPT2O94808 682 aa19.84■□□□□ 0.77
CLN3-254ENST00000637050 ASS1P00966 412 aaKnown RBP19.84■□□□□ 0.77
CLN3-254ENST00000637050 GHRP10912 638 aa19.84■□□□□ 0.77
CLN3-254ENST00000637050 MNX1P50219 401 aaPredicted RBP19.84■□□□□ 0.77
CLN3-254ENST00000637050 LBX1P52954 281 aa19.84■□□□□ 0.77
CLN3-254ENST00000637050 SMG8Q8ND04 991 aaKnown RBP19.84■□□□□ 0.77
CLN3-254ENST00000637050 ACRBPQ8NEB7 543 aa19.84■□□□□ 0.77
CLN3-254ENST00000637050 ELMO3Q96BJ8 720 aa19.84■□□□□ 0.77
CLN3-254ENST00000637050 HAUS4Q9H6D7 363 aa19.84■□□□□ 0.77
CLN3-254ENST00000637050 REXO2Q9Y3B8 237 aaKnown RBP19.84■□□□□ 0.77
CLN3-254ENST00000637050 IPPQ9Y573 584 aa19.84■□□□□ 0.77
CLN3-254ENST00000637050 CITO14578 2027 aa19.83■□□□□ 0.77
CLN3-254ENST00000637050 RECQL4O94761 1208 aa19.83■□□□□ 0.76
CLN3-254ENST00000637050 LCA5LO95447 670 aa19.83■□□□□ 0.76
CLN3-254ENST00000637050 SGPL1O95470 568 aa19.83■□□□□ 0.76
CLN3-254ENST00000637050 CCDC172P0C7W6 258 aa19.83■□□□□ 0.76
CLN3-254ENST00000637050 CD52P31358 61 aa19.83■□□□□ 0.76
CLN3-254ENST00000637050 KIF11P52732 1056 aa19.83■□□□□ 0.76
CLN3-254ENST00000637050 NOP14P78316 857 aaKnown RBP19.83■□□□□ 0.76
CLN3-254ENST00000637050 PAK2Q13177 524 aa19.83■□□□□ 0.76
CLN3-254ENST00000637050 SGSM1Q2NKQ1 1148 aa19.83■□□□□ 0.76
CLN3-254ENST00000637050 SPOPLQ6IQ16 392 aa19.83■□□□□ 0.76
CLN3-254ENST00000637050 FAM71AQ8IYT1 594 aa19.83■□□□□ 0.76
CLN3-254ENST00000637050 C1orf127Q8N9H9 656 aa19.83■□□□□ 0.76
CLN3-254ENST00000637050 CXorf38Q8TB03 319 aa19.83■□□□□ 0.76
CLN3-254ENST00000637050 CAGE1Q8TC20 777 aa19.83■□□□□ 0.76
CLN3-254ENST00000637050 U2AF1L4Q8WU68 220 aaKnown RBP19.83■□□□□ 0.76
CLN3-254ENST00000637050 IMPG2Q9BZV3 1241 aa19.83■□□□□ 0.76
CLN3-254ENST00000637050 DEF6Q9H4E7 631 aa19.83■□□□□ 0.76
CLN3-254ENST00000637050 CNTN3Q9P232 1028 aa19.83■□□□□ 0.76
CLN3-254ENST00000637050 SIX4Q9UIU6 781 aa19.83■□□□□ 0.76
CLN3-254ENST00000637050 CD4P01730 458 aa19.82■□□□□ 0.76
CLN3-254ENST00000637050 MYL6P60660 151 aa19.82■□□□□ 0.76
CLN3-254ENST00000637050 PTK2Q05397 1052 aa19.82■□□□□ 0.76
CLN3-254ENST00000637050 TRPC3Q13507 836 aa19.82■□□□□ 0.76
CLN3-254ENST00000637050 XKR4Q5GH76 650 aa19.82■□□□□ 0.76
CLN3-254ENST00000637050 JAKMIP2Q96AA8 810 aa19.82■□□□□ 0.76
CLN3-254ENST00000637050 XYLT2Q9H1B5 865 aa19.82■□□□□ 0.76
CLN3-254ENST00000637050 RNF39Q9H2S5 420 aa19.82■□□□□ 0.76
CLN3-254ENST00000637050 NUB1Q9Y5A7 615 aa19.82■□□□□ 0.76
CLN3-254ENST00000637050 DNAH12Q6ZR08 3092 aa19.82■□□□□ 0.76
CLN3-254ENST00000637050 AKR1B10O60218 316 aa19.81■□□□□ 0.76
CLN3-254ENST00000637050 AKAP5P24588 427 aa19.81■□□□□ 0.76
CLN3-254ENST00000637050 ANXA13P27216 316 aa19.81■□□□□ 0.76
CLN3-254ENST00000637050 CTCFP49711 727 aaPredicted RBP19.81■□□□□ 0.76
CLN3-254ENST00000637050 KRT83P78385 493 aa19.81■□□□□ 0.76
CLN3-254ENST00000637050 DSC3Q14574 896 aa19.81■□□□□ 0.76
CLN3-254ENST00000637050 ZBTB6Q15916 424 aa19.81■□□□□ 0.76
CLN3-254ENST00000637050 ZNF571Q7Z3V5 609 aaPredicted RBP19.81■□□□□ 0.76
CLN3-254ENST00000637050 TAF4BQ92750 862 aa19.81■□□□□ 0.76
CLN3-254ENST00000637050 KIF12Q96FN5 646 aa19.81■□□□□ 0.76
CLN3-254ENST00000637050 TSPAN18Q96SJ8 248 aa19.81■□□□□ 0.76
CLN3-254ENST00000637050 TRAIPQ9BWF2 469 aa19.81■□□□□ 0.76
CLN3-254ENST00000637050 APOL6Q9BWW8 343 aa19.81■□□□□ 0.76
CLN3-254ENST00000637050 CXCL16Q9H2A7 254 aa19.81■□□□□ 0.76
CLN3-254ENST00000637050 FAM105AQ9NUU6 356 aa19.81■□□□□ 0.76
CLN3-254ENST00000637050 PCDHB2Q9Y5E7 798 aa19.81■□□□□ 0.76
CLN3-254ENST00000637050 GOLGA6L9A6NEM1 432 aa19.81■□□□□ 0.76
CLN3-254ENST00000637050 ZNF263O14978 683 aa19.81■□□□□ 0.76
CLN3-254ENST00000637050 ZSCAN20P17040 1043 aaPredicted RBP19.81■□□□□ 0.76
CLN3-254ENST00000637050 TBXAS1P24557 533 aaPredicted RBP19.81■□□□□ 0.76
CLN3-254ENST00000637050 CLCN1P35523 988 aa19.81■□□□□ 0.76
CLN3-254ENST00000637050 CUL2Q13617 745 aa19.81■□□□□ 0.76
CLN3-254ENST00000637050 NYAP1Q6ZVC0 841 aa19.81■□□□□ 0.76
CLN3-254ENST00000637050 ZMAT2Q96NC0 199 aaKnown RBP19.81■□□□□ 0.76
CLN3-254ENST00000637050 ARID3AQ99856 593 aa19.81■□□□□ 0.76
CLN3-254ENST00000637050 ITGA11Q9UKX5 1188 aa19.81■□□□□ 0.76
CLN3-254ENST00000637050 IPO7O95373 1038 aaKnown RBP19.8■□□□□ 0.76
CLN3-254ENST00000637050 TFRCP02786 760 aaKnown RBP19.8■□□□□ 0.76
CLN3-254ENST00000637050 HSPA1AP0DMV8 641 aaKnown RBP19.8■□□□□ 0.76
CLN3-254ENST00000637050 HSPA1BP0DMV9 641 aaKnown RBP19.8■□□□□ 0.76
CLN3-254ENST00000637050 KCNE1P15382 129 aa19.8■□□□□ 0.76
CLN3-254ENST00000637050 MBTPS1Q14703 1052 aa19.8■□□□□ 0.76
CLN3-254ENST00000637050 SPA17Q15506 151 aa19.8■□□□□ 0.76
CLN3-254ENST00000637050 UMODL1Q5DID0 1318 aa19.8■□□□□ 0.76
CLN3-254ENST00000637050 SYT11Q9BT88 431 aa19.8■□□□□ 0.76
CLN3-254ENST00000637050 DPP3Q9NY33 737 aa19.8■□□□□ 0.76
CLN3-254ENST00000637050 PARP2Q9UGN5 583 aa19.8■□□□□ 0.76
CLN3-254ENST00000637050 MGEA5O60502 916 aa19.79■□□□□ 0.76
CLN3-254ENST00000637050 ITGB3P05106 788 aa19.79■□□□□ 0.76
CLN3-254ENST00000637050 CYP27A1Q02318 531 aa19.79■□□□□ 0.76
CLN3-254ENST00000637050 GFPT1Q06210 699 aaPredicted RBP19.79■□□□□ 0.76
CLN3-254ENST00000637050 BFSP2Q13515 415 aa19.79■□□□□ 0.76
CLN3-254ENST00000637050 SLC18A3Q16572 532 aa19.79■□□□□ 0.76
CLN3-254ENST00000637050 ZNF699Q32M78 642 aa19.79■□□□□ 0.76
CLN3-254ENST00000637050 VRTNQ9H8Y1 702 aa19.79■□□□□ 0.76
CLN3-254ENST00000637050 ADAMTS1Q9UHI8 967 aa19.79■□□□□ 0.76
CLN3-254ENST00000637050 BRCA2P51587 3418 aa19.78■□□□□ 0.76
CLN3-254ENST00000637050 A0A087X0T9 212 aa19.78■□□□□ 0.76
CLN3-254ENST00000637050 SMIM28A0A1B0GU29 152 aa19.78■□□□□ 0.76
CLN3-254ENST00000637050 ZNF623O75123 536 aa19.78■□□□□ 0.76
CLN3-254ENST00000637050 KRT19P08727 400 aa19.78■□□□□ 0.76
CLN3-254ENST00000637050 FAM228BP0C875 321 aa19.78■□□□□ 0.76
CLN3-254ENST00000637050 SELPP16109 830 aa19.78■□□□□ 0.76
CLN3-254ENST00000637050 ACO1P21399 889 aaKnown RBP19.78■□□□□ 0.76
CLN3-254ENST00000637050 ATICP31939 592 aa19.78■□□□□ 0.76
CLN3-254ENST00000637050 RAB27AP51159 221 aa19.78■□□□□ 0.76
CLN3-254ENST00000637050 SMYD5Q6GMV2 418 aa19.78■□□□□ 0.76
CLN3-254ENST00000637050 SLC39A5Q6ZMH5 540 aa19.78■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms