RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 FUOMA2VDF0 154 aa7.24□□□□□ -1.25
SCN1A-213ENST00000636759 NOTOA8MTQ0 251 aa7.24□□□□□ -1.25
SCN1A-213ENST00000636759 MSL3P1P0C860 447 aa7.24□□□□□ -1.25
SCN1A-213ENST00000636759 FGFR4P22455 802 aa7.24□□□□□ -1.25
SCN1A-213ENST00000636759 PGM1P36871 562 aa7.24□□□□□ -1.25
SCN1A-213ENST00000636759 MXI1P50539 228 aa7.24□□□□□ -1.25
SCN1A-213ENST00000636759 BCAP31P51572 246 aa7.24□□□□□ -1.25
SCN1A-213ENST00000636759 NOP14P78316 857 aaKnown RBP7.24□□□□□ -1.25
SCN1A-213ENST00000636759 CTC1Q2NKJ3 1217 aa7.24□□□□□ -1.25
SCN1A-213ENST00000636759 ARHGAP27Q6ZUM4 889 aa7.24□□□□□ -1.25
SCN1A-213ENST00000636759 ADSSL1Q8N142 457 aa7.24□□□□□ -1.25
SCN1A-213ENST00000636759 ANKLE1Q8NAG6 615 aa7.24□□□□□ -1.25
SCN1A-213ENST00000636759 PYROXD1Q8WU10 500 aa7.24□□□□□ -1.25
SCN1A-213ENST00000636759 TMEM109Q9BVC6 243 aa7.24□□□□□ -1.25
SCN1A-213ENST00000636759 CRNKL1Q9BZJ0 848 aaKnown RBP7.24□□□□□ -1.25
SCN1A-213ENST00000636759 TLE6Q9H808 572 aa7.24□□□□□ -1.25
SCN1A-213ENST00000636759 PALMDQ9NP74 551 aa7.24□□□□□ -1.25
SCN1A-213ENST00000636759 KIAA1522Q9P206 1035 aaPredicted RBP7.24□□□□□ -1.25
SCN1A-213ENST00000636759 UVRAGQ9P2Y5 699 aa7.24□□□□□ -1.25
SCN1A-213ENST00000636759 CCPG1Q9ULG6 757 aa7.24□□□□□ -1.25
SCN1A-213ENST00000636759 LZTS1Q9Y250 596 aa7.24□□□□□ -1.25
SCN1A-213ENST00000636759 STARD13Q9Y3M8 1113 aa7.24□□□□□ -1.25
SCN1A-213ENST00000636759 AK5Q9Y6K8 562 aa7.24□□□□□ -1.25
SCN1A-213ENST00000636759 SCINQ9Y6U3 715 aa7.24□□□□□ -1.25
SCN1A-213ENST00000636759 CFAP69A5D8W1 941 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 FAM47E-STBD1D6RA91 191 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 GSC2O15499 205 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 ZNF862O60290 1169 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 ADAM23O75077 832 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 LDHCP07864 332 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 ESRRAP11474 423 aaPredicted RBP7.23□□□□□ -1.25
SCN1A-213ENST00000636759 ITGA4P13612 1032 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 KRT13P13646 458 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 ATP6V1B1P15313 513 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 CRABP2P29373 138 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 CETN2P41208 172 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 WASHC5Q12768 1159 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 PDK3Q15120 406 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 LONRF1Q17RB8 773 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 LRRC36Q1X8D7 754 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 ARL13BQ3SXY8 428 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 HPS3Q969F9 1004 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 PRPF18Q99633 342 aaKnown RBP7.23□□□□□ -1.25
SCN1A-213ENST00000636759 GPATCH1Q9BRR8 931 aaKnown RBP7.23□□□□□ -1.25
SCN1A-213ENST00000636759 ERP44Q9BS26 406 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 PHF20Q9BVI0 1012 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 MRPL1Q9BYD6 325 aaKnown RBP7.23□□□□□ -1.25
SCN1A-213ENST00000636759 TANGO6Q9C0B7 1094 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 GRIP2Q9C0E4 1043 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 Q9H521 79 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 DNAJC17Q9NVM6 304 aaKnown RBP7.23□□□□□ -1.25
SCN1A-213ENST00000636759 PHTF1Q9UMS5 762 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 ARIH1Q9Y4X5 557 aaPredicted RBP7.23□□□□□ -1.25
SCN1A-213ENST00000636759 NOX1Q9Y5S8 564 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 SEC23IPQ9Y6Y8 1000 aaKnown RBP7.23□□□□□ -1.25
SCN1A-213ENST00000636759 KAT6BQ8WYB5 2073 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 ZNF804BA4D1E1 1349 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 SPATA31A6Q5VVP1 1343 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 VILLO15195 856 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 TEX28O15482 410 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 T-ENOLP0DO92 83 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 UQCRBP14927 111 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 GRIA2P42262 883 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 ERFP50548 548 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 POLR2FP61218 127 aaKnown RBP7.23□□□□□ -1.25
SCN1A-213ENST00000636759 DNAJC3Q13217 504 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 NR5A1Q13285 461 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 CNGA3Q16281 694 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 KYNUQ16719 465 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 TMEM266Q2M3C6 531 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 SLC10A5Q5PT55 438 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 PPP2R2DQ66LE6 453 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 MFSD5Q6N075 450 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 UBE2Q1Q7Z7E8 422 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 IFNL3Q8IZI9 196 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 FBXO25Q8TCJ0 367 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 LRRC15Q8TF66 581 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 PRICKLE1Q96MT3 831 aaPredicted RBP7.23□□□□□ -1.25
SCN1A-213ENST00000636759 HGH1Q9BTY7 390 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 PSTPIP2Q9H939 334 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 RRN3Q9NYV6 651 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 ARMCX3Q9UH62 379 aaPredicted RBP7.23□□□□□ -1.25
SCN1A-213ENST00000636759 RBBP6Q7Z6E9 1792 aaKnown RBP7.23□□□□□ -1.25
SCN1A-213ENST00000636759 XDHP47989 1333 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 FAM187AA6NFU0 413 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 M0R2N6 131 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 UQCRFS1P1P0C7P4 283 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 KRT4P19013 534 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 PDAP1Q13442 181 aaKnown RBP7.23□□□□□ -1.25
SCN1A-213ENST00000636759 RASGRF1Q13972 1273 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 SF3B3Q15393 1217 aaKnown RBP7.23□□□□□ -1.25
SCN1A-213ENST00000636759 KCTD19Q17RG1 926 aaPredicted RBP7.23□□□□□ -1.25
SCN1A-213ENST00000636759 ANKDD1AQ495B1 522 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 NADK2Q4G0N4 442 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 SLC45A4Q5BKX6 768 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 PDXDC2PQ6P474 469 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 ALDH16A1Q8IZ83 802 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 METTL13Q8N6R0 699 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 C4orf32Q8N8J7 132 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 PPP1R14CQ8TAE6 165 aa7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms