RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 C8orf33Q9H7E9 229 aaPredicted RBP16.12■□□□□ 0.17
CLN3-249ENST00000636685 XPNPEP1Q9NQW7 623 aa16.12■□□□□ 0.17
CLN3-249ENST00000636685 PPME1Q9Y570 386 aa16.12■□□□□ 0.17
CLN3-249ENST00000636685 BACE2Q9Y5Z0 518 aa16.12■□□□□ 0.17
CLN3-249ENST00000636685 PCNX2A6NKB5 2137 aa16.12■□□□□ 0.17
CLN3-249ENST00000636685 SPECC1L-ADORA2AF8WAN1 911 aa16.11■□□□□ 0.17
CLN3-249ENST00000636685 I3L4J1 428 aa16.11■□□□□ 0.17
CLN3-249ENST00000636685 ZBTB39O15060 712 aa16.11■□□□□ 0.17
CLN3-249ENST00000636685 THP07101 528 aa16.11■□□□□ 0.17
CLN3-249ENST00000636685 ELF1P32519 619 aa16.11■□□□□ 0.17
CLN3-249ENST00000636685 EXOSC10Q01780 885 aaKnown RBP16.11■□□□□ 0.17
CLN3-249ENST00000636685 ROR1Q01973 937 aa16.11■□□□□ 0.17
CLN3-249ENST00000636685 CAPSQ13938 189 aa16.11■□□□□ 0.17
CLN3-249ENST00000636685 NECTIN1Q15223 517 aa16.11■□□□□ 0.17
CLN3-249ENST00000636685 DAB2IPQ5VWQ8 1189 aa16.11■□□□□ 0.17
CLN3-249ENST00000636685 C1orf228Q6PIY5 440 aa16.11■□□□□ 0.17
CLN3-249ENST00000636685 YAF2Q8IY57 180 aa16.11■□□□□ 0.17
CLN3-249ENST00000636685 ABCA7Q8IZY2 2146 aa16.11■□□□□ 0.17
CLN3-249ENST00000636685 MTRQ99707 1265 aa16.11■□□□□ 0.17
CLN3-249ENST00000636685 TRPV4Q9HBA0 871 aa16.11■□□□□ 0.17
CLN3-249ENST00000636685 HELZ2Q9BYK8 2649 aaKnown RBP16.11■□□□□ 0.17
CLN3-249ENST00000636685 CACNA1EQ15878 2313 aa16.11■□□□□ 0.17
CLN3-249ENST00000636685 ASH1LQ9NR48 2969 aaKnown RBP16.11■□□□□ 0.17
CLN3-249ENST00000636685 CYP3A7-CYP3A51PA0A087WV96 503 aa16.1■□□□□ 0.17
CLN3-249ENST00000636685 A0A1B0GUA9 196 aa16.1■□□□□ 0.17
CLN3-249ENST00000636685 MYBPHLA2RUH7 354 aa16.1■□□□□ 0.17
CLN3-249ENST00000636685 PRPF3O43395 683 aaKnown RBP16.1■□□□□ 0.17
CLN3-249ENST00000636685 SEC24AO95486 1093 aa16.1■□□□□ 0.17
CLN3-249ENST00000636685 CYP3A7P24462 503 aa16.1■□□□□ 0.17
CLN3-249ENST00000636685 YWHABP31946 246 aaKnown RBP16.1■□□□□ 0.17
CLN3-249ENST00000636685 CTHP32929 405 aa16.1■□□□□ 0.17
CLN3-249ENST00000636685 CCINQ13939 588 aa16.1■□□□□ 0.17
CLN3-249ENST00000636685 TFDP1Q14186 410 aa16.1■□□□□ 0.17
CLN3-249ENST00000636685 MXD4Q14582 209 aaPredicted RBP16.1■□□□□ 0.17
CLN3-249ENST00000636685 PLK5Q496M5 336 aa16.1■□□□□ 0.17
CLN3-249ENST00000636685 XKR9Q5GH70 373 aa16.1■□□□□ 0.17
CLN3-249ENST00000636685 CYP4A22Q5TCH4 519 aa16.1■□□□□ 0.17
CLN3-249ENST00000636685 CD300LGQ6UXG3 332 aa16.1■□□□□ 0.17
CLN3-249ENST00000636685 GPIHBP1Q8IV16 184 aa16.1■□□□□ 0.17
CLN3-249ENST00000636685 ZNF461Q8TAF7 563 aa16.1■□□□□ 0.17
CLN3-249ENST00000636685 FAM200AQ8TCP9 573 aa16.1■□□□□ 0.17
CLN3-249ENST00000636685 KIF12Q96FN5 646 aa16.1■□□□□ 0.17
CLN3-249ENST00000636685 ZC3H10Q96K80 434 aaKnown RBP16.1■□□□□ 0.17
CLN3-249ENST00000636685 CYP4F11Q9HBI6 524 aa16.1■□□□□ 0.17
CLN3-249ENST00000636685 SNTG2Q9NY99 539 aa16.1■□□□□ 0.17
CLN3-249ENST00000636685 VPS54Q9P1Q0 977 aa16.1■□□□□ 0.17
CLN3-249ENST00000636685 CHADO15335 359 aa16.09■□□□□ 0.17
CLN3-249ENST00000636685 HYAL3O43820 417 aaPredicted RBP16.09■□□□□ 0.17
CLN3-249ENST00000636685 DKC1O60832 514 aaKnown RBP eCLIP16.09■□□□□ 0.17
CLN3-249ENST00000636685 ABLIM3O94929 683 aa16.09■□□□□ 0.17
CLN3-249ENST00000636685 P4HBP07237 508 aaKnown RBP16.09■□□□□ 0.17
CLN3-249ENST00000636685 MYL4P12829 197 aa16.09■□□□□ 0.17
CLN3-249ENST00000636685 CEACAM1P13688 526 aa16.09■□□□□ 0.17
CLN3-249ENST00000636685 ARPP19P56211 112 aa16.09■□□□□ 0.17
CLN3-249ENST00000636685 CREB5Q02930 508 aa16.09■□□□□ 0.17
CLN3-249ENST00000636685 TEAD2Q15562 447 aa16.09■□□□□ 0.17
CLN3-249ENST00000636685 ANKS3Q6ZW76 656 aa16.09■□□□□ 0.17
CLN3-249ENST00000636685 RALGPS2Q86X27 583 aaPredicted RBP16.09■□□□□ 0.17
CLN3-249ENST00000636685 LXNQ9BS40 222 aa16.09■□□□□ 0.17
CLN3-249ENST00000636685 DUSP15Q9H1R2 295 aaPredicted RBP16.09■□□□□ 0.17
CLN3-249ENST00000636685 SLKQ9H2G2 1235 aaPredicted RBP16.09■□□□□ 0.17
CLN3-249ENST00000636685 POLR3BQ9NW08 1133 aaPredicted RBP16.09■□□□□ 0.17
CLN3-249ENST00000636685 VAV3Q9UKW4 847 aa16.09■□□□□ 0.17
CLN3-249ENST00000636685 INSL5Q9Y5Q6 135 aa16.09■□□□□ 0.17
CLN3-249ENST00000636685 CCDC163A0A0D9SF12 145 aa16.08■□□□□ 0.16
CLN3-249ENST00000636685 LNP1A1A4G5 178 aa16.08■□□□□ 0.16
CLN3-249ENST00000636685 AKAP3O75969 853 aa16.08■□□□□ 0.16
CLN3-249ENST00000636685 RECQL4O94761 1208 aa16.08■□□□□ 0.16
CLN3-249ENST00000636685 B3GAT3O94766 335 aa16.08■□□□□ 0.16
CLN3-249ENST00000636685 CAVIN2O95810 425 aa16.08■□□□□ 0.16
CLN3-249ENST00000636685 CSRP1P21291 193 aaKnown RBP16.08■□□□□ 0.16
CLN3-249ENST00000636685 BRCC3P46736 316 aa16.08■□□□□ 0.16
CLN3-249ENST00000636685 POU5F1BQ06416 359 aa16.08■□□□□ 0.16
CLN3-249ENST00000636685 PPP2R5CQ13362 524 aa16.08■□□□□ 0.16
CLN3-249ENST00000636685 SLC8B1Q6J4K2 584 aa16.08■□□□□ 0.16
CLN3-249ENST00000636685 C19orf48Q6RUI8 117 aa16.08■□□□□ 0.16
CLN3-249ENST00000636685 OTUD6AQ7L8S5 288 aa16.08■□□□□ 0.16
CLN3-249ENST00000636685 C4orf19Q8IY42 314 aa16.08■□□□□ 0.16
CLN3-249ENST00000636685 TCEAL8Q8IYN2 117 aa16.08■□□□□ 0.16
CLN3-249ENST00000636685 SYNPOQ8N3V7 929 aa16.08■□□□□ 0.16
CLN3-249ENST00000636685 CCDC148Q8NFR7 591 aa16.08■□□□□ 0.16
CLN3-249ENST00000636685 ZFYVE19Q96K21 471 aa16.08■□□□□ 0.16
CLN3-249ENST00000636685 SLITRK6Q9H5Y7 841 aa16.08■□□□□ 0.16
CLN3-249ENST00000636685 GTSE1Q9NYZ3 720 aa16.08■□□□□ 0.16
CLN3-249ENST00000636685 RGL1Q9NZL6 768 aa16.08■□□□□ 0.16
CLN3-249ENST00000636685 CEP72Q9P209 647 aa16.08■□□□□ 0.16
CLN3-249ENST00000636685 THADAQ6YHU6 1953 aa16.07■□□□□ 0.16
CLN3-249ENST00000636685 FREM2Q5SZK8 3169 aa16.07■□□□□ 0.16
CLN3-249ENST00000636685 TMEM189-UBE2V1I3L0A0 370 aa16.07■□□□□ 0.16
CLN3-249ENST00000636685 TBX3O15119 743 aa16.07■□□□□ 0.16
CLN3-249ENST00000636685 SLC37A4O43826 429 aa16.07■□□□□ 0.16
CLN3-249ENST00000636685 PRKCBP05771 671 aa16.07■□□□□ 0.16
CLN3-249ENST00000636685 ATF2P15336 505 aa16.07■□□□□ 0.16
CLN3-249ENST00000636685 GLRA2P23416 452 aa16.07■□□□□ 0.16
CLN3-249ENST00000636685 CLCNKBP51801 687 aa16.07■□□□□ 0.16
CLN3-249ENST00000636685 FCHO2Q0JRZ9 810 aa16.07■□□□□ 0.16
CLN3-249ENST00000636685 IQCEQ6IPM2 695 aa16.07■□□□□ 0.16
CLN3-249ENST00000636685 DHX32Q7L7V1 743 aaKnown RBP16.07■□□□□ 0.16
CLN3-249ENST00000636685 DEFB124Q8NES8 71 aa16.07■□□□□ 0.16
CLN3-249ENST00000636685 SHKBP1Q8TBC3 707 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms