RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 RBM25P49756 843 aaKnown RBP16.16■□□□□ 0.18
PNKP-218ENST00000625299 CCR3P51677 355 aa16.16■□□□□ 0.18
PNKP-218ENST00000625299 FOSBP53539 338 aa16.16■□□□□ 0.18
PNKP-218ENST00000625299 PRSS36Q5K4E3 855 aa16.16■□□□□ 0.18
PNKP-218ENST00000625299 PDZD4Q76G19 769 aaPredicted RBP16.16■□□□□ 0.18
PNKP-218ENST00000625299 CELF5Q8N6W0 485 aaKnown RBP16.16■□□□□ 0.18
PNKP-218ENST00000625299 NETO1Q8TDF5 533 aa16.16■□□□□ 0.18
PNKP-218ENST00000625299 IRF7Q92985 503 aa16.16■□□□□ 0.18
PNKP-218ENST00000625299 PPP1R10Q96QC0 940 aaKnown RBP16.16■□□□□ 0.18
PNKP-218ENST00000625299 CCDC113Q9H0I3 377 aa16.16■□□□□ 0.18
PNKP-218ENST00000625299 PIAS3Q9Y6X2 628 aa16.16■□□□□ 0.18
PNKP-218ENST00000625299 COL4A2P08572 1712 aa16.16■□□□□ 0.18
PNKP-218ENST00000625299 ARHGEF37A1IGU5 675 aa16.15■□□□□ 0.18
PNKP-218ENST00000625299 WDR27A2RRH5 827 aa16.15■□□□□ 0.18
PNKP-218ENST00000625299 WNT7AO00755 349 aa16.15■□□□□ 0.18
PNKP-218ENST00000625299 NRG2O14511 850 aaPredicted RBP16.15■□□□□ 0.18
PNKP-218ENST00000625299 XRCC6P12956 609 aaKnown RBP eCLIP16.15■□□□□ 0.18
PNKP-218ENST00000625299 SATB1Q01826 763 aa16.15■□□□□ 0.18
PNKP-218ENST00000625299 SIM2Q14190 667 aaPredicted RBP16.15■□□□□ 0.18
PNKP-218ENST00000625299 UPP1Q16831 310 aa16.15■□□□□ 0.18
PNKP-218ENST00000625299 CD300LGQ6UXG3 332 aa16.15■□□□□ 0.18
PNKP-218ENST00000625299 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.15■□□□□ 0.18
PNKP-218ENST00000625299 ZNF687Q8N1G0 1237 aa16.15■□□□□ 0.18
PNKP-218ENST00000625299 ZNF461Q8TAF7 563 aa16.15■□□□□ 0.18
PNKP-218ENST00000625299 WASF1Q92558 559 aa16.15■□□□□ 0.18
PNKP-218ENST00000625299 TNFRSF25Q93038 417 aa16.15■□□□□ 0.18
PNKP-218ENST00000625299 UROC1Q96N76 676 aa16.15■□□□□ 0.18
PNKP-218ENST00000625299 ASB16Q96NS5 453 aa16.15■□□□□ 0.18
PNKP-218ENST00000625299 TM6SF1Q9BZW5 370 aa16.15■□□□□ 0.18
PNKP-218ENST00000625299 ZNF334Q9HCZ1 680 aaPredicted RBP16.15■□□□□ 0.18
PNKP-218ENST00000625299 AVENQ9NQS1 362 aaPredicted RBP16.15■□□□□ 0.18
PNKP-218ENST00000625299 ARHGEF35A5YM69 484 aa16.14■□□□□ 0.17
PNKP-218ENST00000625299 ZNF197O14709 1029 aa16.14■□□□□ 0.17
PNKP-218ENST00000625299 SLC30A4O14863 429 aa16.14■□□□□ 0.17
PNKP-218ENST00000625299 MED24O75448 989 aa16.14■□□□□ 0.17
PNKP-218ENST00000625299 RETP07949 1114 aa16.14■□□□□ 0.17
PNKP-218ENST00000625299 SPATA31C1P0DKV0 1188 aa16.14■□□□□ 0.17
PNKP-218ENST00000625299 GJA1P17302 382 aa16.14■□□□□ 0.17
PNKP-218ENST00000625299 VIPR2P41587 438 aa16.14■□□□□ 0.17
PNKP-218ENST00000625299 CCR2P41597 374 aa16.14■□□□□ 0.17
PNKP-218ENST00000625299 NAMPTP43490 491 aa16.14■□□□□ 0.17
PNKP-218ENST00000625299 CYP4A22Q5TCH4 519 aa16.14■□□□□ 0.17
PNKP-218ENST00000625299 ATF7IP2Q5U623 682 aa16.14■□□□□ 0.17
PNKP-218ENST00000625299 PADI6Q6TGC4 694 aa16.14■□□□□ 0.17
PNKP-218ENST00000625299 VITQ6UXI7 678 aa16.14■□□□□ 0.17
PNKP-218ENST00000625299 CATSPER3Q86XQ3 398 aa16.14■□□□□ 0.17
PNKP-218ENST00000625299 HS6ST3Q8IZP7 471 aa16.14■□□□□ 0.17
PNKP-218ENST00000625299 ELMOD1Q8N336 334 aa16.14■□□□□ 0.17
PNKP-218ENST00000625299 ZSWIM3Q96MP5 696 aa16.14■□□□□ 0.17
PNKP-218ENST00000625299 IER2Q9BTL4 223 aa16.14■□□□□ 0.17
PNKP-218ENST00000625299 POLD4Q9HCU8 107 aa16.14■□□□□ 0.17
PNKP-218ENST00000625299 SEMA4GQ9NTN9 838 aa16.14■□□□□ 0.17
PNKP-218ENST00000625299 TPCN1Q9ULQ1 816 aa16.14■□□□□ 0.17
PNKP-218ENST00000625299 INSL5Q9Y5Q6 135 aa16.14■□□□□ 0.17
PNKP-218ENST00000625299 PDCD11Q14690 1871 aaKnown RBP16.14■□□□□ 0.17
PNKP-218ENST00000625299 CHURC1-FNTBB4DL54 471 aa16.13■□□□□ 0.17
PNKP-218ENST00000625299 PODXLO00592 558 aa16.13■□□□□ 0.17
PNKP-218ENST00000625299 ZNF263O14978 683 aa16.13■□□□□ 0.17
PNKP-218ENST00000625299 PFKFB2O60825 505 aa16.13■□□□□ 0.17
PNKP-218ENST00000625299 CTDNEP1O95476 244 aa16.13■□□□□ 0.17
PNKP-218ENST00000625299 SEC24AO95486 1093 aa16.13■□□□□ 0.17
PNKP-218ENST00000625299 MYL4P12829 197 aa16.13■□□□□ 0.17
PNKP-218ENST00000625299 PSMC3P17980 439 aa16.13■□□□□ 0.17
PNKP-218ENST00000625299 CCNE1P24864 410 aa16.13■□□□□ 0.17
PNKP-218ENST00000625299 CXCL12P48061 93 aa16.13■□□□□ 0.17
PNKP-218ENST00000625299 FNTBP49356 437 aa16.13■□□□□ 0.17
PNKP-218ENST00000625299 YARSP54577 528 aaKnown RBP16.13■□□□□ 0.17
PNKP-218ENST00000625299 OSTNP61366 133 aa16.13■□□□□ 0.17
PNKP-218ENST00000625299 SOX4Q06945 474 aaPredicted RBP16.13■□□□□ 0.17
PNKP-218ENST00000625299 DMWDQ09019 674 aa16.13■□□□□ 0.17
PNKP-218ENST00000625299 SRSF5Q13243 272 aaKnown RBP16.13■□□□□ 0.17
PNKP-218ENST00000625299 PPP2R5AQ15172 486 aa16.13■□□□□ 0.17
PNKP-218ENST00000625299 IQCEQ6IPM2 695 aa16.13■□□□□ 0.17
PNKP-218ENST00000625299 SLC8B1Q6J4K2 584 aa16.13■□□□□ 0.17
PNKP-218ENST00000625299 PRR23CQ6ZRP0 262 aa16.13■□□□□ 0.17
PNKP-218ENST00000625299 APBB1IPQ7Z5R6 666 aaPredicted RBP16.13■□□□□ 0.17
PNKP-218ENST00000625299 CEP120Q8N960 986 aa16.13■□□□□ 0.17
PNKP-218ENST00000625299 SMARCD2Q92925 531 aa16.13■□□□□ 0.17
PNKP-218ENST00000625299 NACC1Q96RE7 527 aa16.13■□□□□ 0.17
PNKP-218ENST00000625299 TMEM60Q9H2L4 133 aa16.13■□□□□ 0.17
PNKP-218ENST00000625299 SLITRK6Q9H5Y7 841 aa16.13■□□□□ 0.17
PNKP-218ENST00000625299 TUFT1Q9NNX1 390 aa16.13■□□□□ 0.17
PNKP-218ENST00000625299 NUB1Q9Y5A7 615 aa16.13■□□□□ 0.17
PNKP-218ENST00000625299 SMIM28A0A1B0GU29 152 aa16.12■□□□□ 0.17
PNKP-218ENST00000625299 BTBD18B2RXH4 712 aa16.12■□□□□ 0.17
PNKP-218ENST00000625299 ABLIM3O94929 683 aa16.12■□□□□ 0.17
PNKP-218ENST00000625299 ATF2P15336 505 aa16.12■□□□□ 0.17
PNKP-218ENST00000625299 CYP11B2P19099 503 aa16.12■□□□□ 0.17
PNKP-218ENST00000625299 TWF1Q12792 350 aa16.12■□□□□ 0.17
PNKP-218ENST00000625299 NT5DC1Q5TFE4 455 aa16.12■□□□□ 0.17
PNKP-218ENST00000625299 HEATR6Q6AI08 1181 aaKnown RBP16.12■□□□□ 0.17
PNKP-218ENST00000625299 MAP4K3Q8IVH8 894 aa16.12■□□□□ 0.17
PNKP-218ENST00000625299 DIS3L2Q8IYB7 885 aaKnown RBP16.12■□□□□ 0.17
PNKP-218ENST00000625299 TCEAL8Q8IYN2 117 aa16.12■□□□□ 0.17
PNKP-218ENST00000625299 ZSCAN18Q8TBC5 510 aaPredicted RBP16.12■□□□□ 0.17
PNKP-218ENST00000625299 DEPDC1BQ8WUY9 529 aa16.12■□□□□ 0.17
PNKP-218ENST00000625299 IFT74Q96LB3 600 aa16.12■□□□□ 0.17
PNKP-218ENST00000625299 ZNF512Q96ME7 567 aaPredicted RBP16.12■□□□□ 0.17
PNKP-218ENST00000625299 MTMR9Q96QG7 549 aa16.12■□□□□ 0.17
PNKP-218ENST00000625299 CCDC94Q9BW85 323 aaPredicted RBP16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms